Wall clock time and date at job start Fri Apr 10 2020 18:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 120.00245 * 2 1 4 4 H 1.48495 * 109.47242 * 274.81960 * 3 2 1 5 5 H 1.48502 * 109.47051 * 34.82089 * 3 2 1 6 6 H 1.48500 * 109.47152 * 154.81939 * 3 2 1 7 7 C 1.38812 * 120.00013 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00115 * 163.47438 * 7 2 1 9 9 N 1.36933 * 119.99827 * 343.47458 * 7 2 1 10 10 C 1.47172 * 121.22610 * 333.54040 * 9 7 2 11 11 C 1.53228 * 108.70469 * 230.92204 * 10 9 7 12 12 O 1.43082 * 109.43869 * 308.41321 * 11 10 9 13 13 C 1.42688 * 113.87035 * 61.65501 * 12 11 10 14 14 H 1.08995 * 108.93095 * 55.58713 * 13 12 11 15 15 C 1.52510 * 110.62235 * 174.64204 * 13 12 11 16 16 C 1.53598 * 109.73067 * 61.17232 * 15 13 12 17 17 N 1.46985 * 108.20840 * 54.73850 * 16 15 13 18 18 C 1.34777 * 120.71423 * 125.44358 * 17 16 15 19 19 O 1.21285 * 119.99376 * 179.71990 * 18 17 16 20 20 C 1.50696 * 120.00393 * 359.72319 * 18 17 16 21 21 N 1.46494 * 109.47085 * 179.97438 * 20 18 17 22 22 N 1.28598 * 124.62010 * 90.00053 * 21 20 18 23 23 C 1.31377 * 108.72524 * 179.97438 * 22 21 20 24 24 C 1.39680 * 105.89666 * 0.22821 * 23 22 21 25 25 N 1.28599 * 124.62159 * 269.99560 * 21 20 18 26 26 C 1.46785 * 118.56073 * 305.16974 * 17 16 15 27 27 C 1.47598 * 121.22477 * 153.52155 * 9 7 2 28 28 H 1.08999 * 111.16357 * 7.22678 * 27 9 7 29 29 H 0.97004 * 119.99449 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.59936 * 111.15302 * 10 9 7 31 31 H 1.09000 * 109.59563 * 350.68283 * 10 9 7 32 32 H 1.08992 * 109.47781 * 188.42541 * 11 10 9 33 33 H 1.09000 * 109.48315 * 68.40545 * 11 10 9 34 34 H 1.09002 * 109.41916 * 181.39671 * 15 13 12 35 35 H 1.08998 * 109.41530 * 301.26169 * 15 13 12 36 36 H 1.09005 * 109.78558 * 295.11185 * 16 15 13 37 37 H 1.08998 * 109.72521 * 174.33556 * 16 15 13 38 38 H 1.09004 * 109.47168 * 59.99363 * 20 18 17 39 39 H 1.09000 * 109.46792 * 299.99729 * 20 18 17 40 40 H 1.07997 * 127.05788 * 179.97438 * 23 22 21 41 41 H 1.08003 * 127.05556 * 179.73990 * 24 23 22 42 42 H 1.09003 * 109.52287 * 174.44331 * 26 17 16 43 43 H 1.08999 * 109.52461 * 294.57118 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3959 2.1052 -1.3951 5 1 1.5024 2.6211 0.7995 6 1 3.5951 1.4128 0.5957 7 6 2.0103 -1.2021 0.0005 8 1 3.0567 -1.2216 -0.2655 9 7 1.3680 -2.3634 0.3384 10 6 0.1927 -2.3553 1.2241 11 6 0.4156 -3.3753 2.3457 12 8 0.7814 -4.6362 1.7768 13 6 1.9971 -4.6021 1.0305 14 1 2.7927 -4.2167 1.6681 15 6 2.3847 -6.0037 0.5710 16 6 1.2884 -6.5716 -0.3427 17 7 1.0637 -5.6177 -1.4381 18 6 1.1448 -6.0142 -2.7237 19 8 0.9519 -5.2171 -3.6173 20 6 1.4750 -7.4477 -3.0507 21 7 1.5026 -7.6228 -4.5049 22 7 2.5471 -7.4707 -5.2394 23 6 2.2206 -7.7037 -6.4905 24 6 0.8590 -8.0151 -6.4789 25 7 0.4856 -7.9498 -5.2209 26 6 0.7430 -4.2254 -1.1015 27 6 1.8287 -3.6691 -0.1727 28 1 2.7719 -3.5709 -0.7100 29 1 -0.4849 0.8401 0.0004 30 1 -0.6962 -2.6265 0.6546 31 1 0.0655 -1.3616 1.6537 32 1 -0.5029 -3.4891 2.9213 33 1 1.2142 -3.0268 3.0006 34 1 3.3271 -5.9584 0.0252 35 1 2.5002 -6.6510 1.4403 36 1 0.3666 -6.7021 0.2243 37 1 1.6097 -7.5296 -0.7512 38 1 0.7171 -8.1024 -2.6205 39 1 2.4508 -7.6995 -2.6355 40 1 2.8706 -7.6593 -7.3518 41 1 0.2403 -8.2606 -7.3293 42 1 0.7040 -3.6298 -2.0137 43 1 -0.2232 -4.1854 -0.5987 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074255983.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:45 Heat of formation + Delta-G solvation = 50.914448 kcal Electronic energy + Delta-G solvation = -28233.345958 eV Core-core repulsion = 24316.930410 eV Total energy + Delta-G solvation = -3916.415548 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.46842 -41.59573 -40.12846 -37.26504 -36.47394 -34.83810 -33.51662 -33.37156 -33.11041 -31.23279 -29.85399 -28.82370 -26.19723 -25.66751 -24.47892 -23.80094 -23.11543 -22.83736 -21.05246 -19.83783 -19.02577 -18.78482 -18.38495 -17.23241 -17.13897 -17.03733 -16.78333 -16.49101 -16.19224 -16.01202 -15.61455 -15.50311 -15.13835 -14.88392 -14.79778 -14.38589 -14.04920 -13.81576 -13.42681 -13.40207 -13.11682 -12.86516 -12.66310 -12.55809 -12.48519 -12.28280 -12.12676 -11.89166 -11.78396 -11.76584 -11.32219 -11.31492 -11.20492 -10.80219 -10.55227 -10.23675 -9.81438 -8.75073 -7.96914 -5.44455 0.73296 1.26688 1.34717 1.41139 1.42236 1.52301 1.63667 1.93882 2.42907 2.88145 3.18201 3.21515 3.31440 3.42638 3.81596 3.88976 3.99111 4.02920 4.10224 4.16163 4.17826 4.22409 4.40448 4.51211 4.52897 4.59655 4.62833 4.77280 4.82940 4.86142 4.96755 5.02977 5.08900 5.20842 5.29715 5.36228 5.37289 5.52129 5.56889 5.68485 6.22642 6.28186 6.34171 6.93216 7.00886 7.38161 7.67432 8.21118 9.07884 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.015543 B = 0.003733 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.038593 B = 7498.178552 C = 8669.685375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.045 4.045 3 Si 0.969 3.031 4 H -0.291 1.291 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.269 4.269 8 H 0.066 0.934 9 N -0.603 5.603 10 C 0.145 3.855 11 C 0.053 3.947 12 O -0.380 6.380 13 C 0.084 3.916 14 H 0.051 0.949 15 C -0.117 4.117 16 C 0.102 3.898 17 N -0.595 5.595 18 C 0.493 3.507 19 O -0.589 6.589 20 C 0.128 3.872 21 N -0.159 5.159 22 N -0.313 5.313 23 C -0.026 4.026 24 C -0.026 4.026 25 N -0.314 5.314 26 C 0.126 3.874 27 C 0.132 3.868 28 H 0.062 0.938 29 H 0.252 0.748 30 H 0.000 1.000 31 H 0.066 0.934 32 H 0.109 0.891 33 H 0.047 0.953 34 H 0.095 0.905 35 H 0.118 0.882 36 H 0.086 0.914 37 H 0.133 0.867 38 H 0.172 0.828 39 H 0.174 0.826 40 H 0.232 0.768 41 H 0.232 0.768 42 H 0.036 0.964 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.581 -21.328 -1.361 21.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.241 4.241 3 Si 0.796 3.204 4 H -0.218 1.218 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.399 4.399 8 H 0.084 0.916 9 N -0.326 5.326 10 C 0.019 3.981 11 C -0.025 4.025 12 O -0.299 6.299 13 C 0.024 3.976 14 H 0.069 0.931 15 C -0.155 4.155 16 C -0.019 4.019 17 N -0.328 5.328 18 C 0.280 3.720 19 O -0.469 6.469 20 C 0.005 3.995 21 N -0.059 5.059 22 N -0.153 5.153 23 C -0.209 4.209 24 C -0.209 4.209 25 N -0.154 5.154 26 C 0.000 4.000 27 C 0.024 3.976 28 H 0.080 0.920 29 H 0.061 0.939 30 H 0.018 0.982 31 H 0.084 0.916 32 H 0.127 0.873 33 H 0.065 0.935 34 H 0.113 0.887 35 H 0.136 0.864 36 H 0.104 0.896 37 H 0.150 0.850 38 H 0.189 0.811 39 H 0.191 0.809 40 H 0.248 0.752 41 H 0.248 0.752 42 H 0.054 0.946 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.253 -20.755 -0.362 21.189 hybrid contribution -0.012 2.148 -1.336 2.530 sum 4.240 -18.607 -1.698 19.159 Atomic orbital electron populations 1.70176 1.06636 1.26090 1.54759 1.25806 0.96084 1.01529 1.00667 0.85252 0.78418 0.79471 0.77250 1.21815 1.21279 1.19064 1.19466 0.92660 0.85610 1.42126 0.91627 1.44533 1.33683 1.01542 1.52814 1.21307 0.87701 0.98542 0.90528 1.23143 1.00517 0.83996 0.94806 1.87729 1.41810 1.31148 1.69231 1.22281 0.86769 0.96871 0.91642 0.93138 1.21971 0.98920 0.93439 1.01175 1.22290 1.00367 0.91940 0.87290 1.48273 1.68210 1.10658 1.05656 1.21289 0.77075 0.91057 0.82602 1.90767 1.52000 1.56420 1.47723 1.22078 1.10326 0.94026 0.73089 1.47603 1.02002 1.47326 1.08926 1.73996 1.16523 1.19263 1.05504 1.25465 0.96952 1.03650 0.94852 1.25467 0.96091 1.04802 0.94538 1.73996 1.17117 1.18190 1.06122 1.21767 0.99212 0.81037 0.97938 1.21750 0.95466 0.86537 0.93851 0.92020 0.93887 0.98184 0.91559 0.87307 0.93499 0.88689 0.86390 0.89605 0.84966 0.81087 0.80867 0.75193 0.75181 0.94572 0.92894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.45 11.14 21.65 0.24 -55.20 16 2 C -0.04 -2.53 4.96 84.86 0.42 -2.11 16 3 Si 0.97 45.38 29.58 68.60 2.03 47.41 16 4 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 5 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.27 -14.97 9.71 84.03 0.82 -14.16 16 8 H 0.07 3.60 7.88 -2.91 -0.02 3.58 16 9 N -0.60 -30.20 2.71 -672.36 -1.82 -32.02 16 10 C 0.14 6.86 4.93 86.33 0.43 7.29 16 11 C 0.05 1.91 6.98 72.06 0.50 2.42 16 12 O -0.38 -12.53 9.59 -148.98 -1.43 -13.96 16 13 C 0.08 2.61 2.72 30.49 0.08 2.69 16 14 H 0.05 1.63 8.13 -2.39 -0.02 1.61 16 15 C -0.12 -2.23 5.84 30.63 0.18 -2.05 16 16 C 0.10 1.82 6.20 86.49 0.54 2.36 16 17 N -0.60 -17.77 2.95 -818.07 -2.42 -20.19 16 18 C 0.49 15.67 7.77 87.66 0.68 16.35 16 19 O -0.59 -26.52 15.84 -3.04 -0.05 -26.57 16 20 C 0.13 2.56 5.37 85.63 0.46 3.02 16 21 N -0.16 -4.28 3.44 -190.82 -0.66 -4.94 16 22 N -0.31 -8.56 12.05 -56.87 -0.69 -9.25 16 23 C -0.03 -0.55 12.20 85.11 1.04 0.49 16 24 C -0.03 -0.55 12.20 85.11 1.04 0.49 16 25 N -0.31 -8.60 12.05 -56.86 -0.69 -9.29 16 26 C 0.13 5.24 5.62 86.43 0.49 5.73 16 27 C 0.13 5.42 3.00 44.95 0.13 5.56 16 28 H 0.06 2.65 8.03 -2.39 -0.02 2.64 16 29 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 30 H 0.00 0.00 7.17 -2.39 -0.02 -0.01 16 31 H 0.07 3.53 6.14 -2.39 -0.01 3.51 16 32 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 33 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.09 1.60 7.94 -2.38 -0.02 1.58 16 37 H 0.13 0.97 5.94 -2.39 -0.01 0.95 16 38 H 0.17 2.09 7.92 -2.38 -0.02 2.07 16 39 H 0.17 2.05 7.72 -2.39 -0.02 2.03 16 40 H 0.23 2.76 8.06 -2.91 -0.02 2.74 16 41 H 0.23 2.74 8.06 -2.91 -0.02 2.72 16 42 H 0.04 1.86 7.00 -2.39 -0.02 1.85 16 43 H 0.05 2.37 6.57 -2.39 -0.02 2.36 16 Total: -1.00 -85.61 345.60 2.36 -83.25 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: 1.03 Total: 12.66 kcal Atomic # 6 Polarization: 21.29 SS G_CDS: 6.80 Total: 28.09 kcal Atomic # 7 Polarization: -124.85 SS G_CDS: -6.03 Total: -130.88 kcal Atomic # 8 Polarization: -39.05 SS G_CDS: -1.48 Total: -40.53 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -85.61 2.36 -83.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074255983.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.164 kcal (2) G-P(sol) polarization free energy of solvation -85.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds