Wall clock time and date at job start Fri Apr 10 2020 18:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.33321 * 126.81084 * 2 1 4 4 N 1.28514 * 109.43897 * 180.02562 * 3 2 1 5 5 N 1.28713 * 110.63429 * 359.75528 * 4 3 2 6 6 H 0.97002 * 126.04007 * 180.26215 * 5 4 3 7 7 C 1.37001 * 126.81536 * 180.02562 * 2 1 3 8 8 C 1.47242 * 127.18800 * 359.93023 * 7 2 1 9 9 O 1.21614 * 119.99475 * 331.60158 * 8 7 2 10 10 N 1.34773 * 119.99837 * 151.60116 * 8 7 2 11 11 C 1.46845 * 120.41130 * 355.59320 * 10 8 7 12 12 C 1.53361 * 109.24127 * 127.76541 * 11 10 8 13 13 C 1.52783 * 108.81758 * 53.84191 * 12 11 10 14 14 H 1.08999 * 109.34049 * 57.15188 * 13 12 11 15 15 O 1.42604 * 111.11880 * 177.45162 * 13 12 11 16 16 C 1.43148 * 113.62568 * 183.64477 * 15 13 12 17 17 C 1.53195 * 109.73980 * 298.31541 * 16 15 13 18 18 N 1.47354 * 108.81015 * 51.19915 * 17 16 15 19 19 C 1.36928 * 121.30129 * 129.77112 * 18 17 16 20 20 H 1.08001 * 119.99729 * 209.36539 * 19 18 17 21 21 C 1.38811 * 120.00292 * 29.36726 * 19 18 17 22 22 N 1.31614 * 119.99954 * 13.72716 * 21 19 18 23 23 Si 1.86804 * 120.00136 * 193.72144 * 21 19 18 24 24 H 1.48504 * 109.47165 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.46888 * 120.00090 * 23 21 19 26 26 H 1.48498 * 109.47172 * 240.00356 * 23 21 19 27 27 C 1.46880 * 117.38708 * 309.77170 * 18 17 16 28 28 H 1.08998 * 110.21704 * 292.01291 * 27 18 17 29 29 C 1.47130 * 120.40864 * 175.61601 * 10 8 7 30 30 H 1.09000 * 109.46625 * 269.95907 * 1 2 3 31 31 H 1.08995 * 109.47017 * 29.95010 * 1 2 3 32 32 H 1.08994 * 109.46990 * 149.95678 * 1 2 3 33 33 H 1.08997 * 109.50868 * 247.69514 * 11 10 8 34 34 H 1.09001 * 109.50943 * 7.78834 * 11 10 8 35 35 H 1.08997 * 109.58129 * 173.64378 * 12 11 10 36 36 H 1.09000 * 109.58107 * 294.03941 * 12 11 10 37 37 H 1.09007 * 109.42566 * 58.39309 * 16 15 13 38 38 H 1.08998 * 109.42889 * 178.28202 * 16 15 13 39 39 H 1.08998 * 109.58216 * 170.99793 * 17 16 15 40 40 H 1.09005 * 109.57704 * 291.40120 * 17 16 15 41 41 H 0.97004 * 120.00113 * 179.97438 * 22 21 19 42 42 H 1.08993 * 109.72620 * 113.53805 * 29 10 8 43 43 H 1.09003 * 109.72426 * 352.87339 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3059 1.0674 0.0000 4 7 3.5324 0.6837 -0.0005 5 7 3.6057 -0.6013 0.0042 6 1 4.4213 -1.1265 0.0085 7 6 2.3281 -1.0968 -0.0005 8 6 1.9223 -2.5122 0.0003 9 8 0.8646 -2.8412 0.5024 10 7 2.7230 -3.4430 -0.5553 11 6 3.9550 -3.0456 -1.2487 12 6 5.1341 -3.8467 -0.6830 13 6 4.8023 -5.3358 -0.7639 14 1 4.5828 -5.6011 -1.7981 15 8 5.8927 -6.1310 -0.3032 16 6 5.6708 -7.5392 -0.4329 17 6 4.4631 -7.9529 0.4139 18 7 3.3289 -7.0709 0.0867 19 6 2.0969 -7.5817 -0.2233 20 1 1.4399 -7.0410 -0.8884 21 6 1.6923 -8.7946 0.3173 22 7 2.3574 -9.3211 1.3236 23 14 0.2037 -9.6793 -0.3834 24 1 -0.3633 -8.8844 -1.5023 25 1 0.6128 -11.0161 -0.8841 26 1 -0.8214 -9.8410 0.6788 27 6 3.5718 -5.6225 0.1061 28 1 3.7570 -5.2852 1.1259 29 6 2.3733 -4.8699 -0.4752 30 1 -0.3632 -0.0007 1.0277 31 1 -0.3633 0.8904 -0.5130 32 1 -0.3633 -0.8896 -0.5145 33 1 3.8546 -3.2493 -2.3147 34 1 4.1310 -1.9808 -1.0965 35 1 6.0303 -3.6398 -1.2679 36 1 5.3013 -3.5656 0.3568 37 1 5.4805 -7.7814 -1.4785 38 1 6.5542 -8.0784 -0.0909 39 1 4.1980 -8.9865 0.1918 40 1 4.7081 -7.8557 1.4716 41 1 2.0744 -10.1684 1.7016 42 1 2.1482 -5.2501 -1.4715 43 1 1.5071 -5.0005 0.1734 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074313142.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:59 Heat of formation + Delta-G solvation = 43.814115 kcal Electronic energy + Delta-G solvation = -28527.107903 eV Core-core repulsion = 24610.384462 eV Total energy + Delta-G solvation = -3916.723441 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.64196 -41.54257 -40.08832 -37.76999 -36.58066 -35.22560 -33.95533 -33.21808 -33.06036 -31.47948 -29.35211 -28.71993 -27.04900 -25.83043 -24.92944 -24.05983 -23.33939 -22.59884 -21.52626 -21.07070 -19.24255 -18.73063 -18.30166 -17.51807 -17.41542 -17.09250 -16.87644 -16.53468 -16.18058 -15.66551 -15.48963 -15.35218 -14.85717 -14.74703 -14.66401 -14.19196 -14.01546 -13.94251 -13.62966 -13.48987 -13.10598 -13.01686 -12.87548 -12.79161 -12.53069 -12.41279 -12.23856 -12.04466 -11.96716 -11.86851 -11.61906 -11.36002 -11.27558 -10.77035 -10.55682 -10.47993 -9.90610 -8.73598 -7.92886 -5.43875 -0.28017 1.03799 1.20978 1.44293 1.47293 1.53798 1.56582 1.83937 2.45255 2.74043 2.94044 3.23930 3.28218 3.33823 3.55997 3.72680 3.78286 3.88911 3.90217 4.13242 4.15276 4.22827 4.33038 4.48424 4.52130 4.53592 4.56463 4.70924 4.73604 4.80216 4.87991 4.93674 5.02569 5.07118 5.12899 5.23464 5.30412 5.49998 5.53359 5.61033 6.02888 6.24027 6.31817 6.71560 7.03481 7.08017 7.70423 8.26087 9.13323 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.015851 B = 0.004243 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.030780 B = 6597.437894 C = 8048.375243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.053 3.947 3 N -0.286 5.286 4 N -0.049 5.049 5 N -0.358 5.358 6 H 0.467 0.533 7 C -0.067 4.067 8 C 0.594 3.406 9 O -0.543 6.543 10 N -0.601 5.601 11 C 0.098 3.902 12 C -0.122 4.122 13 C 0.080 3.920 14 H 0.061 0.939 15 O -0.390 6.390 16 C 0.053 3.947 17 C 0.147 3.853 18 N -0.604 5.604 19 C -0.262 4.262 20 H 0.078 0.922 21 C -0.044 4.044 22 N -0.934 5.934 23 Si 0.964 3.036 24 H -0.263 1.263 25 H -0.288 1.288 26 H -0.297 1.297 27 C 0.132 3.868 28 H 0.010 0.990 29 C 0.141 3.859 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.079 0.921 33 H 0.107 0.893 34 H 0.100 0.900 35 H 0.124 0.876 36 H 0.076 0.924 37 H 0.051 0.949 38 H 0.108 0.892 39 H 0.067 0.933 40 H -0.003 1.003 41 H 0.251 0.749 42 H 0.082 0.918 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.741 14.922 -7.841 17.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.087 4.087 3 N -0.153 5.153 4 N -0.030 5.030 5 N -0.093 5.093 6 H 0.323 0.677 7 C -0.201 4.201 8 C 0.380 3.620 9 O -0.418 6.418 10 N -0.334 5.334 11 C -0.025 4.025 12 C -0.160 4.160 13 C 0.020 3.980 14 H 0.079 0.921 15 O -0.309 6.309 16 C -0.025 4.025 17 C 0.022 3.978 18 N -0.329 5.329 19 C -0.392 4.392 20 H 0.096 0.904 21 C -0.240 4.240 22 N -0.580 5.580 23 Si 0.792 3.208 24 H -0.187 1.187 25 H -0.214 1.214 26 H -0.224 1.224 27 C 0.025 3.975 28 H 0.028 0.972 29 C 0.019 3.981 30 H 0.107 0.893 31 H 0.118 0.882 32 H 0.097 0.903 33 H 0.125 0.875 34 H 0.117 0.883 35 H 0.142 0.858 36 H 0.095 0.905 37 H 0.070 0.930 38 H 0.126 0.874 39 H 0.085 0.915 40 H 0.015 0.985 41 H 0.060 0.940 42 H 0.100 0.900 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.000 16.030 -7.427 18.657 hybrid contribution -1.032 -2.629 0.375 2.849 sum 4.968 13.401 -7.052 15.937 Atomic orbital electron populations 1.20304 0.83732 1.04507 1.04445 1.22656 0.99500 0.86727 0.99794 1.74941 0.95532 1.26342 1.18477 1.78123 1.15776 0.93006 1.16110 1.46214 1.08886 1.06474 1.47752 0.67693 1.21772 0.85803 0.95392 1.17111 1.16980 0.83999 0.82799 0.78240 1.90864 1.23952 1.80464 1.46540 1.48174 1.24126 1.06378 1.54700 1.22344 0.81913 0.99338 0.98856 1.21958 0.99224 0.91115 1.03716 1.22485 0.86522 0.92212 0.96736 0.92096 1.87748 1.40072 1.17449 1.85661 1.23174 0.98857 0.81103 0.99376 1.21279 0.86263 0.95616 0.94654 1.44264 1.07537 0.99488 1.81589 1.19477 0.93911 1.04386 1.21388 0.90433 1.25852 1.00689 1.01079 0.96342 1.70159 1.43121 1.19817 1.24873 0.85264 0.79227 0.78475 0.77867 1.18712 1.21411 1.22395 1.21459 0.94655 0.85296 0.96125 0.97223 1.21436 0.97527 0.77196 1.01935 0.89289 0.88237 0.90252 0.87525 0.88298 0.85756 0.90539 0.93022 0.87420 0.91457 0.98507 0.94020 0.90001 0.91020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.42 9.84 71.24 0.70 -0.72 16 2 C 0.05 1.26 7.29 42.05 0.31 1.57 16 3 N -0.29 -7.11 12.35 -47.88 -0.59 -7.70 16 4 N -0.05 -1.08 13.35 37.02 0.49 -0.58 16 5 N -0.36 -6.44 5.81 -48.52 -0.28 -6.72 16 6 H 0.47 5.29 6.60 -219.90 -1.45 3.84 16 7 C -0.07 -1.56 6.48 40.41 0.26 -1.30 16 8 C 0.59 16.99 7.54 86.61 0.65 17.65 16 9 O -0.54 -19.77 15.30 -4.07 -0.06 -19.83 16 10 N -0.60 -15.75 2.98 -822.76 -2.45 -18.20 16 11 C 0.10 1.61 6.02 86.43 0.52 2.13 16 12 C -0.12 -2.26 5.82 30.64 0.18 -2.08 16 13 C 0.08 2.38 2.48 30.66 0.08 2.46 16 14 H 0.06 1.79 8.13 -2.39 -0.02 1.77 16 15 O -0.39 -13.11 10.49 -148.98 -1.56 -14.67 16 16 C 0.05 1.85 6.95 72.05 0.50 2.35 16 17 C 0.15 6.82 5.40 86.28 0.47 7.28 16 18 N -0.60 -28.68 3.03 -673.89 -2.04 -30.73 16 19 C -0.26 -13.52 8.83 84.03 0.74 -12.78 16 20 H 0.08 3.84 6.32 -2.91 -0.02 3.82 16 21 C -0.04 -2.34 5.01 84.86 0.43 -1.92 16 22 N -0.93 -53.77 11.20 21.65 0.24 -53.53 16 23 Si 0.96 43.50 29.58 68.60 2.03 45.53 16 24 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 25 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 26 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 27 C 0.13 5.11 3.03 45.05 0.14 5.25 16 28 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 29 C 0.14 4.95 4.49 86.26 0.39 5.34 16 30 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.08 1.68 7.45 -2.39 -0.02 1.66 16 33 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.10 1.15 3.37 -2.39 -0.01 1.14 16 35 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 38 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 39 H 0.07 3.45 6.33 -2.39 -0.02 3.44 16 40 H 0.00 -0.16 8.14 -2.38 -0.02 -0.18 16 41 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 42 H 0.08 2.81 7.36 -2.39 -0.02 2.79 16 43 H 0.07 3.04 6.84 -2.39 -0.02 3.03 16 Total: -1.00 -70.13 338.55 0.74 -69.39 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -0.39 Total: 11.82 kcal Atomic # 6 Polarization: 19.86 SS G_CDS: 5.35 Total: 25.22 kcal Atomic # 7 Polarization: -112.83 SS G_CDS: -4.63 Total: -117.46 kcal Atomic # 8 Polarization: -32.88 SS G_CDS: -1.63 Total: -34.50 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -70.13 0.74 -69.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074313142.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.204 kcal (2) G-P(sol) polarization free energy of solvation -70.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds