Wall clock time and date at job start Fri Apr 10 2020 18:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.33313 * 126.81648 * 2 1 4 4 N 1.28514 * 109.44304 * 179.97438 * 3 2 1 5 5 N 1.28720 * 110.63557 * 359.71123 * 4 3 2 6 6 H 0.96992 * 126.03596 * 180.29748 * 5 4 3 7 7 C 1.37006 * 126.81238 * 179.97438 * 2 1 3 8 8 C 1.47236 * 127.18818 * 0.02663 * 7 2 1 9 9 O 1.21629 * 119.99869 * 106.89775 * 8 7 2 10 10 N 1.34771 * 120.00339 * 286.90064 * 8 7 2 11 11 C 1.46835 * 120.40858 * 354.93636 * 10 8 7 12 12 C 1.51971 * 109.37709 * 231.93315 * 11 10 8 13 13 C 1.52791 * 109.55530 * 306.69301 * 12 11 10 14 14 H 1.09007 * 108.95816 * 302.43242 * 13 12 11 15 15 O 1.42605 * 111.10927 * 181.90034 * 13 12 11 16 16 C 1.43147 * 113.62517 * 176.38786 * 15 13 12 17 17 C 1.53192 * 109.74481 * 61.68751 * 16 15 13 18 18 N 1.47348 * 108.79837 * 308.78566 * 17 16 15 19 19 C 1.36936 * 121.30562 * 230.21574 * 18 17 16 20 20 H 1.08011 * 120.00234 * 149.46498 * 19 18 17 21 21 C 1.38807 * 120.00212 * 329.47683 * 19 18 17 22 22 N 1.31621 * 119.99850 * 350.06255 * 21 19 18 23 23 Si 1.86809 * 120.00308 * 170.06564 * 21 19 18 24 24 H 1.48500 * 109.46975 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.46808 * 119.99849 * 23 21 19 26 26 H 1.48497 * 109.46884 * 239.99940 * 23 21 19 27 27 C 1.46878 * 117.39300 * 50.24203 * 18 17 16 28 28 H 1.08994 * 109.65265 * 67.65007 * 27 18 17 29 29 C 1.47128 * 120.41150 * 174.95766 * 10 8 7 30 30 H 1.08999 * 109.47465 * 270.03253 * 1 2 3 31 31 H 1.09001 * 109.46722 * 30.03193 * 1 2 3 32 32 H 1.08997 * 109.46913 * 150.02951 * 1 2 3 33 33 H 1.09001 * 109.51172 * 352.20062 * 11 10 8 34 34 H 1.09000 * 109.51285 * 112.34684 * 11 10 8 35 35 H 1.08998 * 109.73079 * 186.34951 * 12 11 10 36 36 H 1.09001 * 108.69405 * 66.39991 * 12 11 10 37 37 H 1.09002 * 109.41986 * 181.76677 * 16 15 13 38 38 H 1.08997 * 109.42858 * 301.60020 * 16 15 13 39 39 H 1.09000 * 109.58810 * 188.98933 * 17 16 15 40 40 H 1.09003 * 109.58346 * 68.57668 * 17 16 15 41 41 H 0.97001 * 119.99984 * 179.97438 * 22 21 19 42 42 H 1.08995 * 109.72911 * 7.08206 * 29 10 8 43 43 H 1.09003 * 109.73003 * 246.40638 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3059 1.0672 0.0000 4 7 3.5324 0.6835 0.0005 5 7 3.6057 -0.6016 0.0070 6 1 4.4212 -1.1266 0.0128 7 6 2.3280 -1.0969 0.0005 8 6 1.9222 -2.5122 0.0006 9 8 2.0492 -3.1813 -1.0071 10 7 1.4098 -3.0663 1.1172 11 6 1.3547 -2.3007 2.3689 12 6 1.9897 -3.1130 3.4853 13 6 1.3376 -4.4934 3.5479 14 1 0.2649 -4.3718 3.6987 15 8 1.8796 -5.2695 4.6145 16 6 1.2489 -6.5446 4.7741 17 6 1.4444 -7.3811 3.5057 18 7 1.0317 -6.5797 2.3401 19 6 0.1668 -7.0793 1.4034 20 1 -0.4965 -6.4134 0.8711 21 6 0.1422 -8.4415 1.1381 22 7 1.0746 -9.2259 1.6359 23 14 -1.2142 -9.1617 0.0743 24 1 -2.1322 -8.0776 -0.3583 25 1 -0.6151 -9.8097 -1.1200 26 1 -1.9736 -10.1702 0.8562 27 6 1.5848 -5.2241 2.2220 28 1 2.6559 -5.2809 2.0286 29 6 0.8993 -4.4460 1.0972 30 1 -0.3634 0.0006 1.0276 31 1 -0.3633 0.8897 -0.5143 32 1 -0.3633 -0.8902 -0.5134 33 1 1.8938 -1.3614 2.2452 34 1 0.3153 -2.0938 2.6237 35 1 1.8521 -2.6005 4.4374 36 1 3.0541 -3.2211 3.2768 37 1 1.6925 -7.0645 5.6232 38 1 0.1833 -6.4021 4.9537 39 1 0.8336 -8.2820 3.5644 40 1 2.4948 -7.6552 3.4071 41 1 1.0572 -10.1779 1.4508 42 1 1.1278 -4.9090 0.1373 43 1 -0.1789 -4.4418 1.2569 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074313144.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:08 Heat of formation + Delta-G solvation = 49.684218 kcal Electronic energy + Delta-G solvation = -28561.305199 eV Core-core repulsion = 24644.836304 eV Total energy + Delta-G solvation = -3916.468895 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.56273 -40.25861 -38.66738 -36.33011 -34.81454 -34.20525 -32.88484 -31.74863 -31.52640 -30.03889 -28.25428 -27.19239 -25.66154 -24.07268 -23.94292 -22.54237 -22.06256 -21.34131 -19.98993 -19.68911 -18.22876 -17.40476 -17.03947 -16.33982 -15.99896 -15.54109 -15.36831 -15.18103 -14.64984 -14.24307 -14.09138 -13.84249 -13.61334 -13.37695 -13.23298 -13.01520 -12.88318 -12.78032 -12.68472 -12.20632 -12.05137 -11.46137 -11.35355 -11.13141 -11.07551 -10.95373 -10.78972 -10.70907 -10.38700 -10.28549 -10.22285 -10.11863 -9.70962 -9.38786 -9.10735 -8.65667 -8.63391 -6.79103 -5.92659 -3.43477 0.98136 1.88815 2.12211 2.55994 2.95800 3.29127 3.37432 3.38590 3.99605 4.10986 4.24596 4.33706 4.54359 4.71573 4.92297 5.03671 5.16053 5.23899 5.29212 5.34942 5.40137 5.41163 5.53266 5.57905 5.61649 5.70763 5.78331 5.92577 5.98434 6.00281 6.11401 6.21385 6.30299 6.41159 6.45543 6.49726 6.71477 7.02958 7.20497 7.43981 7.61813 7.79300 7.87738 8.08562 8.25157 9.01016 9.62776 10.21471 11.15033 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.016136 B = 0.004186 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.803822 B = 6686.643554 C = 7720.621860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.024 3.976 3 N -0.263 5.263 4 N -0.059 5.059 5 N -0.367 5.367 6 H 0.454 0.546 7 C -0.045 4.045 8 C 0.588 3.412 9 O -0.513 6.513 10 N -0.590 5.590 11 C 0.112 3.888 12 C -0.125 4.125 13 C 0.077 3.923 14 H 0.054 0.946 15 O -0.388 6.388 16 C 0.038 3.962 17 C 0.144 3.856 18 N -0.587 5.587 19 C -0.262 4.262 20 H 0.071 0.929 21 C 0.011 3.989 22 N -0.901 5.901 23 Si 0.905 3.095 24 H -0.276 1.276 25 H -0.288 1.288 26 H -0.288 1.288 27 C 0.138 3.862 28 H 0.036 0.964 29 C 0.123 3.877 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.041 0.959 39 H 0.096 0.904 40 H 0.028 0.972 41 H 0.256 0.744 42 H 0.107 0.893 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.175 14.670 3.195 15.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.115 4.115 3 N -0.131 5.131 4 N -0.039 5.039 5 N -0.091 5.091 6 H 0.301 0.699 7 C -0.181 4.181 8 C 0.370 3.630 9 O -0.387 6.387 10 N -0.324 5.324 11 C -0.011 4.011 12 C -0.164 4.164 13 C 0.017 3.983 14 H 0.072 0.928 15 O -0.308 6.308 16 C -0.039 4.039 17 C 0.019 3.981 18 N -0.311 5.311 19 C -0.391 4.391 20 H 0.089 0.911 21 C -0.189 4.189 22 N -0.544 5.544 23 Si 0.734 3.266 24 H -0.200 1.200 25 H -0.214 1.214 26 H -0.215 1.215 27 C 0.030 3.970 28 H 0.054 0.946 29 C 0.003 3.997 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.060 0.940 39 H 0.114 0.886 40 H 0.046 0.954 41 H 0.066 0.934 42 H 0.125 0.875 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.090 15.536 2.718 15.809 hybrid contribution -0.656 -1.973 -0.618 2.169 sum 0.434 13.563 2.100 13.732 Atomic orbital electron populations 1.20216 0.85222 1.04188 1.03684 1.22220 0.98318 0.87061 1.03906 1.74833 0.95248 1.25978 1.17001 1.78187 1.15791 0.91989 1.17936 1.45373 1.08567 1.06672 1.48510 0.69877 1.21949 0.85811 0.96654 1.13684 1.16841 0.78733 0.83376 0.84010 1.90909 1.53943 1.61379 1.32440 1.48188 1.60032 1.15376 1.08754 1.21490 1.02075 0.94293 0.83214 1.21591 1.01132 0.95249 0.98412 1.22393 0.96533 0.90064 0.89268 0.92762 1.87745 1.61586 1.29748 1.51678 1.23363 0.96286 0.84212 1.00079 1.21449 0.99308 0.94214 0.83178 1.43973 1.52671 1.10315 1.24184 1.19143 1.12197 0.91544 1.16244 0.91102 1.25183 0.97601 0.97464 0.98634 1.69976 1.32683 1.04466 1.47296 0.86185 0.81286 0.79105 0.79993 1.20043 1.21441 1.21456 1.21267 0.96423 0.87581 0.91776 0.94594 1.21900 0.98210 0.77432 1.02197 0.89811 0.89722 0.90245 0.90030 0.90462 0.89842 0.91092 0.90014 0.94036 0.88562 0.95358 0.93408 0.87523 0.90151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.65 10.28 36.01 0.37 -0.28 16 2 C 0.02 0.28 6.92 -82.39 -0.57 -0.29 16 3 N -0.26 -3.42 12.35 33.51 0.41 -3.00 16 4 N -0.06 -0.72 13.35 60.35 0.81 0.08 16 5 N -0.37 -3.93 7.07 33.31 0.24 -3.69 16 6 H 0.45 3.52 8.96 -190.33 -1.71 1.81 16 7 C -0.04 -0.54 5.15 -82.33 -0.42 -0.97 16 8 C 0.59 8.56 7.32 -12.61 -0.09 8.47 16 9 O -0.51 -9.51 16.51 5.25 0.09 -9.42 16 10 N -0.59 -8.18 2.98 -174.88 -0.52 -8.70 16 11 C 0.11 1.22 6.22 -4.38 -0.03 1.19 16 12 C -0.13 -1.56 5.72 -27.36 -0.16 -1.72 16 13 C 0.08 1.28 2.50 -26.63 -0.07 1.21 16 14 H 0.05 0.90 8.14 -51.92 -0.42 0.48 16 15 O -0.39 -7.17 10.49 -35.23 -0.37 -7.54 16 16 C 0.04 0.71 6.96 37.26 0.26 0.97 16 17 C 0.14 3.26 5.38 -3.48 -0.02 3.25 16 18 N -0.59 -13.72 3.03 -164.36 -0.50 -14.22 16 19 C -0.26 -6.63 8.85 -15.06 -0.13 -6.76 16 20 H 0.07 1.73 6.39 -52.48 -0.34 1.39 16 21 C 0.01 0.28 5.09 -17.43 -0.09 0.20 16 22 N -0.90 -24.90 11.06 55.49 0.61 -24.28 16 23 Si 0.90 20.74 29.57 -169.99 -5.03 15.71 16 24 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 27 C 0.14 2.69 3.00 -67.52 -0.20 2.49 16 28 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 29 C 0.12 2.15 4.56 -3.71 -0.02 2.14 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.72 8.02 -51.93 -0.42 0.30 16 33 H 0.08 0.79 6.11 -51.93 -0.32 0.47 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.10 2.39 6.29 -51.93 -0.33 2.06 16 40 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 42 H 0.11 2.17 6.83 -51.93 -0.35 1.82 16 43 H 0.08 1.37 7.40 -51.93 -0.38 0.99 16 LS Contribution 345.41 15.07 5.21 5.21 Total: -1.00 -31.46 345.41 -7.43 -38.89 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -7.20 Total: 1.09 kcal Atomic # 6 Polarization: 11.06 SS G_CDS: -1.17 Total: 9.89 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: 1.05 Total: -53.82 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -0.28 Total: -16.97 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.71 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.46 -7.43 -38.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074313144.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.574 kcal (2) G-P(sol) polarization free energy of solvation -31.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds