Wall clock time and date at job start Fri Apr 10 2020 18:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.33313 * 126.81648 * 2 1 4 4 N 1.28514 * 109.44304 * 179.97438 * 3 2 1 5 5 N 1.28720 * 110.63557 * 359.71123 * 4 3 2 6 6 H 0.96992 * 126.03596 * 180.29748 * 5 4 3 7 7 C 1.37006 * 126.81238 * 179.97438 * 2 1 3 8 8 C 1.47236 * 127.18818 * 0.02663 * 7 2 1 9 9 O 1.21629 * 119.99869 * 106.89775 * 8 7 2 10 10 N 1.34771 * 120.00339 * 286.90064 * 8 7 2 11 11 C 1.46835 * 120.40858 * 354.93636 * 10 8 7 12 12 C 1.51971 * 109.37709 * 231.93315 * 11 10 8 13 13 C 1.52791 * 109.55530 * 306.69301 * 12 11 10 14 14 H 1.09007 * 108.95816 * 302.43242 * 13 12 11 15 15 O 1.42605 * 111.10927 * 181.90034 * 13 12 11 16 16 C 1.43147 * 113.62517 * 176.38786 * 15 13 12 17 17 C 1.53192 * 109.74481 * 61.68751 * 16 15 13 18 18 N 1.47348 * 108.79837 * 308.78566 * 17 16 15 19 19 C 1.36936 * 121.30562 * 230.21574 * 18 17 16 20 20 H 1.08011 * 120.00234 * 149.46498 * 19 18 17 21 21 C 1.38807 * 120.00212 * 329.47683 * 19 18 17 22 22 N 1.31621 * 119.99850 * 350.06255 * 21 19 18 23 23 Si 1.86809 * 120.00308 * 170.06564 * 21 19 18 24 24 H 1.48500 * 109.46975 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.46808 * 119.99849 * 23 21 19 26 26 H 1.48497 * 109.46884 * 239.99940 * 23 21 19 27 27 C 1.46878 * 117.39300 * 50.24203 * 18 17 16 28 28 H 1.08994 * 109.65265 * 67.65007 * 27 18 17 29 29 C 1.47128 * 120.41150 * 174.95766 * 10 8 7 30 30 H 1.08999 * 109.47465 * 270.03253 * 1 2 3 31 31 H 1.09001 * 109.46722 * 30.03193 * 1 2 3 32 32 H 1.08997 * 109.46913 * 150.02951 * 1 2 3 33 33 H 1.09001 * 109.51172 * 352.20062 * 11 10 8 34 34 H 1.09000 * 109.51285 * 112.34684 * 11 10 8 35 35 H 1.08998 * 109.73079 * 186.34951 * 12 11 10 36 36 H 1.09001 * 108.69405 * 66.39991 * 12 11 10 37 37 H 1.09002 * 109.41986 * 181.76677 * 16 15 13 38 38 H 1.08997 * 109.42858 * 301.60020 * 16 15 13 39 39 H 1.09000 * 109.58810 * 188.98933 * 17 16 15 40 40 H 1.09003 * 109.58346 * 68.57668 * 17 16 15 41 41 H 0.97001 * 119.99984 * 179.97438 * 22 21 19 42 42 H 1.08995 * 109.72911 * 7.08206 * 29 10 8 43 43 H 1.09003 * 109.73003 * 246.40638 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3059 1.0672 0.0000 4 7 3.5324 0.6835 0.0005 5 7 3.6057 -0.6016 0.0070 6 1 4.4212 -1.1266 0.0128 7 6 2.3280 -1.0969 0.0005 8 6 1.9222 -2.5122 0.0006 9 8 2.0492 -3.1813 -1.0071 10 7 1.4098 -3.0663 1.1172 11 6 1.3547 -2.3007 2.3689 12 6 1.9897 -3.1130 3.4853 13 6 1.3376 -4.4934 3.5479 14 1 0.2649 -4.3718 3.6987 15 8 1.8796 -5.2695 4.6145 16 6 1.2489 -6.5446 4.7741 17 6 1.4444 -7.3811 3.5057 18 7 1.0317 -6.5797 2.3401 19 6 0.1668 -7.0793 1.4034 20 1 -0.4965 -6.4134 0.8711 21 6 0.1422 -8.4415 1.1381 22 7 1.0746 -9.2259 1.6359 23 14 -1.2142 -9.1617 0.0743 24 1 -2.1322 -8.0776 -0.3583 25 1 -0.6151 -9.8097 -1.1200 26 1 -1.9736 -10.1702 0.8562 27 6 1.5848 -5.2241 2.2220 28 1 2.6559 -5.2809 2.0286 29 6 0.8993 -4.4460 1.0972 30 1 -0.3634 0.0006 1.0276 31 1 -0.3633 0.8897 -0.5143 32 1 -0.3633 -0.8902 -0.5134 33 1 1.8938 -1.3614 2.2452 34 1 0.3153 -2.0938 2.6237 35 1 1.8521 -2.6005 4.4374 36 1 3.0541 -3.2211 3.2768 37 1 1.6925 -7.0645 5.6232 38 1 0.1833 -6.4021 4.9537 39 1 0.8336 -8.2820 3.5644 40 1 2.4948 -7.6552 3.4071 41 1 1.0572 -10.1779 1.4508 42 1 1.1278 -4.9090 0.1373 43 1 -0.1789 -4.4418 1.2569 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074313144.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:07 Heat of formation + Delta-G solvation = 26.065924 kcal Electronic energy + Delta-G solvation = -28562.329365 eV Core-core repulsion = 24644.836304 eV Total energy + Delta-G solvation = -3917.493061 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -44.49513 -41.53850 -40.07955 -37.62719 -36.54050 -35.08519 -34.03259 -33.24004 -32.91292 -31.49746 -29.28918 -28.71441 -27.02054 -25.56470 -25.06780 -23.77240 -23.32116 -22.57711 -21.49021 -20.87257 -19.28055 -18.72239 -18.49805 -17.44355 -17.32564 -17.07590 -16.75262 -16.50791 -16.19648 -15.64303 -15.50397 -15.23542 -14.72812 -14.72219 -14.65229 -14.09568 -14.07549 -13.89989 -13.60232 -13.41505 -13.12743 -12.96691 -12.89022 -12.75408 -12.41716 -12.37637 -12.25583 -12.02412 -11.95576 -11.79723 -11.67736 -11.40361 -11.26330 -10.73229 -10.55179 -10.30861 -9.91486 -8.70058 -7.90834 -5.44149 0.03342 0.84013 1.19583 1.45338 1.47023 1.48677 1.57105 1.93698 2.46386 2.78284 3.06683 3.26849 3.33182 3.40312 3.66876 3.78017 3.86436 3.99652 4.07497 4.18305 4.19905 4.36802 4.42227 4.51365 4.55034 4.60405 4.62363 4.75216 4.77886 4.84043 4.88844 4.96404 5.05206 5.11643 5.19662 5.25488 5.33698 5.56437 5.61787 5.62572 6.05397 6.26917 6.35069 6.71135 7.05503 7.15887 7.71668 8.28144 9.15122 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.016136 B = 0.004186 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.803822 B = 6686.643554 C = 7720.621860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.036 3.964 3 N -0.282 5.282 4 N -0.062 5.062 5 N -0.353 5.353 6 H 0.465 0.535 7 C -0.056 4.056 8 C 0.596 3.404 9 O -0.560 6.560 10 N -0.583 5.583 11 C 0.112 3.888 12 C -0.117 4.117 13 C 0.080 3.920 14 H 0.064 0.936 15 O -0.393 6.393 16 C 0.052 3.948 17 C 0.148 3.852 18 N -0.604 5.604 19 C -0.260 4.260 20 H 0.080 0.920 21 C -0.045 4.045 22 N -0.936 5.936 23 Si 0.964 3.036 24 H -0.261 1.261 25 H -0.298 1.298 26 H -0.288 1.288 27 C 0.134 3.866 28 H 0.005 0.995 29 C 0.139 3.861 30 H 0.109 0.891 31 H 0.095 0.905 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.108 0.892 35 H 0.115 0.885 36 H 0.063 0.937 37 H 0.106 0.894 38 H 0.052 0.948 39 H 0.070 0.930 40 H -0.005 1.005 41 H 0.250 0.750 42 H 0.070 0.930 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.154 17.463 4.368 18.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.104 4.104 3 N -0.149 5.149 4 N -0.042 5.042 5 N -0.080 5.080 6 H 0.314 0.686 7 C -0.192 4.192 8 C 0.380 3.620 9 O -0.437 6.437 10 N -0.315 5.315 11 C -0.009 4.009 12 C -0.155 4.155 13 C 0.021 3.979 14 H 0.082 0.918 15 O -0.312 6.312 16 C -0.026 4.026 17 C 0.022 3.978 18 N -0.329 5.329 19 C -0.389 4.389 20 H 0.098 0.902 21 C -0.240 4.240 22 N -0.582 5.582 23 Si 0.792 3.208 24 H -0.185 1.185 25 H -0.226 1.226 26 H -0.214 1.214 27 C 0.027 3.973 28 H 0.023 0.977 29 C 0.016 3.984 30 H 0.127 0.873 31 H 0.114 0.886 32 H 0.094 0.906 33 H 0.121 0.879 34 H 0.126 0.874 35 H 0.133 0.867 36 H 0.081 0.919 37 H 0.124 0.876 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.013 0.987 41 H 0.059 0.941 42 H 0.089 0.911 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.233 18.390 3.927 18.806 hybrid contribution -0.165 -2.799 -1.000 2.977 sum -0.398 15.591 2.927 15.868 Atomic orbital electron populations 1.20398 0.83238 1.04566 1.05414 1.22666 0.99468 0.86186 1.02096 1.74856 0.95504 1.26508 1.18031 1.78164 1.15887 0.92325 1.17854 1.45397 1.08750 1.06372 1.47436 0.68555 1.21563 0.86605 0.95287 1.15756 1.17013 0.77710 0.83967 0.83282 1.90893 1.55788 1.62816 1.34234 1.48137 1.59317 1.14092 1.09982 1.21772 1.04212 0.94053 0.80845 1.21604 1.00366 0.92962 1.00588 1.22488 0.97656 0.91273 0.86483 0.91769 1.87753 1.61992 1.29438 1.52021 1.23183 0.97278 0.83890 0.98222 1.21286 0.96609 0.94440 0.85417 1.44250 1.52647 1.11775 1.24254 1.19504 1.12029 0.91683 1.15719 0.90247 1.25909 0.99699 0.98114 1.00326 1.70139 1.34626 1.04247 1.49186 0.85247 0.79061 0.78485 0.77960 1.18499 1.22552 1.21447 1.21418 0.94585 0.86483 0.94845 0.97700 1.21464 0.98416 0.79062 0.99432 0.87306 0.88584 0.90634 0.87908 0.87434 0.86700 0.91867 0.87587 0.92929 0.91161 0.98717 0.94066 0.91126 0.89258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.11 10.28 71.24 0.73 -0.37 16 2 C 0.04 0.74 6.92 42.05 0.29 1.03 16 3 N -0.28 -6.62 12.35 -47.88 -0.59 -7.22 16 4 N -0.06 -1.40 13.35 37.02 0.49 -0.90 16 5 N -0.35 -6.91 7.07 -48.52 -0.34 -7.25 16 6 H 0.47 6.55 8.96 -219.90 -1.97 4.58 16 7 C -0.06 -1.25 5.15 40.41 0.21 -1.04 16 8 C 0.60 16.77 7.32 86.61 0.63 17.41 16 9 O -0.56 -21.09 16.51 -4.12 -0.07 -21.16 16 10 N -0.58 -15.19 2.98 -825.45 -2.46 -17.65 16 11 C 0.11 2.00 6.22 85.98 0.53 2.54 16 12 C -0.12 -2.50 5.72 30.19 0.17 -2.33 16 13 C 0.08 2.49 2.50 30.66 0.08 2.56 16 14 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 15 O -0.39 -13.74 10.49 -148.98 -1.56 -15.31 16 16 C 0.05 1.87 6.96 72.05 0.50 2.37 16 17 C 0.15 6.92 5.38 86.28 0.46 7.38 16 18 N -0.60 -28.83 3.03 -673.91 -2.04 -30.87 16 19 C -0.26 -13.34 8.85 84.03 0.74 -12.60 16 20 H 0.08 3.87 6.39 -2.91 -0.02 3.85 16 21 C -0.04 -2.40 5.09 84.86 0.43 -1.97 16 22 N -0.94 -53.91 11.06 21.65 0.24 -53.67 16 23 Si 0.96 43.39 29.57 68.60 2.03 45.42 16 24 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 25 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 26 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 27 C 0.13 5.26 3.00 45.05 0.14 5.39 16 28 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 29 C 0.14 4.79 4.56 86.26 0.39 5.19 16 30 H 0.11 1.02 8.14 -2.39 -0.02 1.01 16 31 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.07 1.16 8.02 -2.39 -0.02 1.14 16 33 H 0.10 1.51 6.11 -2.39 -0.01 1.50 16 34 H 0.11 1.39 8.14 -2.39 -0.02 1.38 16 35 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.11 3.28 8.14 -2.39 -0.02 3.26 16 38 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.07 3.63 6.29 -2.39 -0.02 3.62 16 40 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 41 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 42 H 0.07 2.97 6.83 -2.39 -0.02 2.96 16 43 H 0.09 2.93 7.40 -2.39 -0.02 2.91 16 Total: -1.00 -71.16 345.41 0.09 -71.06 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -0.92 Total: 11.99 kcal Atomic # 6 Polarization: 20.24 SS G_CDS: 5.32 Total: 25.55 kcal Atomic # 7 Polarization: -112.86 SS G_CDS: -4.71 Total: -117.56 kcal Atomic # 8 Polarization: -34.83 SS G_CDS: -1.63 Total: -36.46 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -71.16 0.09 -71.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074313144.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.130 kcal (2) G-P(sol) polarization free energy of solvation -71.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds