Wall clock time and date at job start Fri Apr 10 2020 18:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 119.99819 * 2 1 4 4 H 1.48502 * 109.47096 * 239.99955 * 3 2 1 5 5 H 1.48502 * 109.47140 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47368 * 119.99698 * 3 2 1 7 7 C 1.38813 * 120.00382 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00043 * 163.45030 * 7 2 1 9 9 N 1.36936 * 119.99505 * 343.45461 * 7 2 1 10 10 C 1.47177 * 121.22923 * 333.55197 * 9 7 2 11 11 C 1.53223 * 108.70208 * 230.96623 * 10 9 7 12 12 O 1.43079 * 109.44986 * 308.42281 * 11 10 9 13 13 C 1.42694 * 113.86785 * 61.64770 * 12 11 10 14 14 H 1.09002 * 108.92577 * 54.93228 * 13 12 11 15 15 C 1.52503 * 110.62563 * 174.64225 * 13 12 11 16 16 C 1.53164 * 109.79267 * 60.62202 * 15 13 12 17 17 N 1.46982 * 108.61695 * 54.41866 * 16 15 13 18 18 C 1.34777 * 120.71814 * 125.54478 * 17 16 15 19 19 O 1.21282 * 119.99949 * 180.02562 * 18 17 16 20 20 C 1.50704 * 120.00504 * 359.97438 * 18 17 16 21 21 C 1.50692 * 109.47690 * 180.02562 * 20 18 17 22 22 N 1.33240 * 125.53070 * 269.69828 * 21 20 18 23 23 C 1.30825 * 109.83212 * 179.85100 * 22 21 20 24 24 N 1.34426 * 108.07849 * 0.40573 * 23 22 21 25 25 H 0.96996 * 126.82435 * 179.72168 * 24 23 22 26 26 N 1.30711 * 125.52820 * 89.99575 * 21 20 18 27 27 C 1.46839 * 118.53016 * 305.82806 * 17 16 15 28 28 C 1.47505 * 121.73848 * 153.12943 * 9 7 2 29 29 H 1.09004 * 109.76282 * 7.34710 * 28 9 7 30 30 H 0.97004 * 120.00347 * 0.02562 * 1 2 3 31 31 H 1.08995 * 109.59491 * 111.19833 * 10 9 7 32 32 H 1.09001 * 109.72230 * 350.80929 * 10 9 7 33 33 H 1.09004 * 109.47167 * 188.43330 * 11 10 9 34 34 H 1.09001 * 109.48004 * 68.41698 * 11 10 9 35 35 H 1.08996 * 109.42009 * 300.52484 * 15 13 12 36 36 H 1.08994 * 109.41960 * 180.71703 * 15 13 12 37 37 H 1.08999 * 109.64263 * 174.21241 * 16 15 13 38 38 H 1.09003 * 109.63995 * 294.63142 * 16 15 13 39 39 H 1.09004 * 109.46661 * 300.00972 * 20 18 17 40 40 H 1.08997 * 109.46858 * 60.00158 * 20 18 17 41 41 H 1.08006 * 125.95942 * 180.11933 * 23 22 21 42 42 H 1.09002 * 109.34248 * 294.02778 * 27 17 16 43 43 H 1.09000 * 109.58783 * 173.97358 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0567 -1.2215 -0.2659 9 7 1.3682 -2.3633 0.3388 10 6 0.1929 -2.3551 1.2247 11 6 0.4166 -3.3740 2.3470 12 8 0.7832 -4.6352 1.7795 13 6 1.9989 -4.6009 1.0330 14 1 2.7917 -4.2033 1.6666 15 6 2.3877 -6.0025 0.5748 16 6 1.2893 -6.5774 -0.3247 17 7 1.0382 -5.6317 -1.4215 18 6 1.1042 -6.0340 -2.7061 19 8 0.8951 -5.2425 -3.6009 20 6 1.4390 -7.4670 -3.0308 21 6 1.4493 -7.6542 -4.5260 22 7 0.4016 -8.0078 -5.2693 23 6 0.7532 -8.0771 -6.5275 24 7 2.0596 -7.7720 -6.6130 25 1 2.5987 -7.7445 -7.4189 26 7 2.4889 -7.5015 -5.3035 27 6 0.7202 -4.2378 -1.0866 28 6 1.8135 -3.6734 -0.1721 29 1 2.7549 -3.5589 -0.7095 30 1 -0.4851 0.8401 -0.0004 31 1 -0.6958 -2.6273 0.6555 32 1 0.0624 -1.3615 1.6535 33 1 -0.5019 -3.4879 2.9228 34 1 1.2149 -3.0243 3.0016 35 1 2.5166 -6.6457 1.4453 36 1 3.3238 -5.9553 0.0185 37 1 1.6138 -7.5345 -0.7332 38 1 0.3768 -6.7170 0.2549 39 1 2.4220 -7.7108 -2.6275 40 1 0.6912 -8.1243 -2.5872 41 1 0.1077 -8.3389 -7.3530 42 1 -0.2402 -4.2002 -0.5723 43 1 0.6676 -3.6454 -2.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074379308.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:35 Heat of formation + Delta-G solvation = 46.191672 kcal Electronic energy + Delta-G solvation = -28071.052163 eV Core-core repulsion = 24154.431820 eV Total energy + Delta-G solvation = -3916.620343 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.19802 -40.04140 -38.51435 -35.69980 -34.62410 -33.41438 -31.95919 -31.61248 -31.46412 -29.78572 -28.88339 -27.23796 -24.75324 -23.85670 -22.97185 -22.71793 -21.51900 -20.91356 -19.25710 -18.47319 -18.14045 -17.16713 -16.82986 -15.78459 -15.64010 -15.40217 -15.19895 -15.09176 -14.90145 -14.46851 -14.14461 -13.90168 -13.46145 -13.24819 -13.08989 -12.70954 -12.48595 -12.26849 -12.23478 -12.06237 -11.83963 -11.32200 -11.05552 -10.93852 -10.72972 -10.57303 -10.27115 -10.26143 -10.15944 -10.14750 -9.97985 -9.89128 -9.61084 -9.37778 -8.97612 -8.57523 -8.20189 -6.73978 -5.84836 -3.29179 1.50544 2.52552 2.71615 2.91916 3.35434 3.39013 3.41945 3.44228 3.97586 4.34599 4.42643 4.51279 4.72629 4.79783 5.00590 5.16579 5.26752 5.31029 5.38119 5.40532 5.47502 5.67252 5.79116 5.80579 6.02992 6.06425 6.09644 6.12004 6.18680 6.26088 6.33294 6.38164 6.46751 6.71422 6.78716 6.89053 6.98732 7.10977 7.50634 7.71910 7.77146 7.90869 7.96707 8.31583 8.49657 9.09776 9.71516 10.29937 11.22556 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.015368 B = 0.003661 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.520561 B = 7646.618992 C = 8833.758766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.006 3.994 3 Si 0.907 3.093 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.256 4.256 8 H 0.069 0.931 9 N -0.583 5.583 10 C 0.136 3.864 11 C 0.040 3.960 12 O -0.388 6.388 13 C 0.081 3.919 14 H 0.053 0.947 15 C -0.123 4.123 16 C 0.111 3.889 17 N -0.605 5.605 18 C 0.519 3.481 19 O -0.534 6.534 20 C -0.049 4.049 21 C 0.253 3.747 22 N -0.534 5.534 23 C 0.261 3.739 24 N -0.485 5.485 25 H 0.441 0.559 26 N -0.304 5.304 27 C 0.108 3.892 28 C 0.133 3.867 29 H 0.073 0.927 30 H 0.256 0.744 31 H 0.029 0.971 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.040 0.960 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.115 0.885 40 H 0.120 0.880 41 H 0.222 0.778 42 H 0.069 0.931 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.901 -18.625 -4.790 19.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.193 4.193 3 Si 0.736 3.264 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.385 4.385 8 H 0.086 0.914 9 N -0.306 5.306 10 C 0.010 3.990 11 C -0.038 4.038 12 O -0.307 6.307 13 C 0.021 3.979 14 H 0.071 0.929 15 C -0.162 4.162 16 C -0.012 4.012 17 N -0.339 5.339 18 C 0.304 3.696 19 O -0.410 6.410 20 C -0.091 4.091 21 C -0.031 4.031 22 N -0.262 5.262 23 C -0.039 4.039 24 N -0.203 5.203 25 H 0.286 0.714 26 N -0.133 5.133 27 C -0.015 4.015 28 C 0.024 3.976 29 H 0.091 0.909 30 H 0.066 0.934 31 H 0.047 0.953 32 H 0.113 0.887 33 H 0.099 0.901 34 H 0.059 0.941 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.134 0.866 40 H 0.138 0.862 41 H 0.238 0.762 42 H 0.087 0.913 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.913 -18.018 -4.810 18.875 hybrid contribution 0.659 1.198 -0.849 1.609 sum 3.572 -16.819 -5.659 18.102 Atomic orbital electron populations 1.70009 1.05254 1.25880 1.53198 1.25069 0.95346 0.98495 1.00384 0.86308 0.78887 0.83031 0.78179 1.20785 1.21533 1.20936 1.19121 0.92424 0.84104 1.42847 0.91376 1.44304 1.33754 1.00828 1.51677 1.21471 0.89113 0.98538 0.89862 1.23320 0.98839 0.84967 0.96641 1.87711 1.41287 1.32132 1.69569 1.22242 0.87186 0.94665 0.93811 0.92948 1.21804 0.98538 0.96281 0.99580 1.21680 0.99494 0.91528 0.88527 1.48231 1.69250 1.11695 1.04681 1.20074 0.77704 0.89081 0.82727 1.90734 1.49407 1.55097 1.45774 1.19969 1.05554 0.96772 0.86839 1.23356 0.86429 0.96550 0.96729 1.70349 1.30684 1.23626 1.01580 1.26044 0.85089 0.95984 0.96746 1.48067 1.09884 1.53611 1.08767 0.71420 1.77983 1.23091 1.24449 0.87800 1.22281 0.99720 0.78890 1.00626 1.21600 0.96581 0.87125 0.92253 0.90884 0.93377 0.95332 0.88687 0.90148 0.94131 0.90321 0.90393 0.90334 0.90349 0.86648 0.86200 0.76181 0.91272 0.89382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.82 11.14 55.49 0.62 -25.20 16 2 C 0.01 0.18 4.96 -17.43 -0.09 0.09 16 3 Si 0.91 21.67 29.58 -169.99 -5.03 16.64 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.26 -6.96 9.72 -15.06 -0.15 -7.11 16 8 H 0.07 1.83 7.88 -52.49 -0.41 1.42 16 9 N -0.58 -14.38 2.73 -163.94 -0.45 -14.82 16 10 C 0.14 3.17 4.91 -3.56 -0.02 3.15 16 11 C 0.04 0.76 6.97 37.27 0.26 1.02 16 12 O -0.39 -7.09 9.51 -35.23 -0.33 -7.43 16 13 C 0.08 1.40 2.76 -26.89 -0.07 1.32 16 14 H 0.05 0.95 8.12 -51.93 -0.42 0.52 16 15 C -0.12 -1.58 5.83 -26.90 -0.16 -1.74 16 16 C 0.11 1.37 6.16 -3.69 -0.02 1.35 16 17 N -0.60 -10.01 2.97 -172.74 -0.51 -10.52 16 18 C 0.52 8.94 7.70 -10.98 -0.08 8.85 16 19 O -0.53 -11.83 15.45 5.56 0.09 -11.74 16 20 C -0.05 -0.62 4.68 -29.04 -0.14 -0.75 16 21 C 0.25 3.68 6.63 -156.86 -1.04 2.64 16 22 N -0.53 -7.41 11.19 -11.98 -0.13 -7.54 16 23 C 0.26 2.48 13.13 -90.66 -1.19 1.29 16 24 N -0.49 -4.74 7.45 29.53 0.22 -4.52 16 25 H 0.44 2.46 8.96 -182.34 -1.63 0.83 16 26 N -0.30 -4.33 12.80 32.42 0.41 -3.91 16 27 C 0.11 2.25 5.61 -3.70 -0.02 2.23 16 28 C 0.13 2.78 3.01 -67.12 -0.20 2.58 16 29 H 0.07 1.58 7.99 -51.93 -0.41 1.17 16 30 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.03 0.71 7.14 -51.93 -0.37 0.34 16 32 H 0.10 2.45 6.14 -51.93 -0.32 2.13 16 33 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.08 0.68 5.95 -51.93 -0.31 0.37 16 38 H 0.08 1.00 7.94 -51.93 -0.41 0.59 16 39 H 0.12 1.14 7.71 -51.93 -0.40 0.74 16 40 H 0.12 1.21 7.93 -51.93 -0.41 0.79 16 41 H 0.22 0.86 8.06 -52.48 -0.42 0.44 16 42 H 0.07 1.52 6.51 -51.93 -0.34 1.18 16 43 H 0.09 2.16 7.01 -51.93 -0.36 1.79 16 LS Contribution 344.42 15.07 5.19 5.19 Total: -1.00 -36.86 344.42 -9.91 -46.77 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -7.06 Total: 2.16 kcal Atomic # 6 Polarization: 17.84 SS G_CDS: -2.92 Total: 14.92 kcal Atomic # 7 Polarization: -66.68 SS G_CDS: 0.16 Total: -66.52 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.25 Total: -19.17 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -36.86 -9.91 -46.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074379308.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.962 kcal (2) G-P(sol) polarization free energy of solvation -36.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds