Wall clock time and date at job start Fri Apr 10 2020 18:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 119.99819 * 2 1 4 4 H 1.48502 * 109.47096 * 239.99955 * 3 2 1 5 5 H 1.48502 * 109.47140 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47368 * 119.99698 * 3 2 1 7 7 C 1.38813 * 120.00382 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00043 * 163.45030 * 7 2 1 9 9 N 1.36936 * 119.99505 * 343.45461 * 7 2 1 10 10 C 1.47177 * 121.22923 * 333.55197 * 9 7 2 11 11 C 1.53223 * 108.70208 * 230.96623 * 10 9 7 12 12 O 1.43079 * 109.44986 * 308.42281 * 11 10 9 13 13 C 1.42694 * 113.86785 * 61.64770 * 12 11 10 14 14 H 1.09002 * 108.92577 * 54.93228 * 13 12 11 15 15 C 1.52503 * 110.62563 * 174.64225 * 13 12 11 16 16 C 1.53164 * 109.79267 * 60.62202 * 15 13 12 17 17 N 1.46982 * 108.61695 * 54.41866 * 16 15 13 18 18 C 1.34777 * 120.71814 * 125.54478 * 17 16 15 19 19 O 1.21282 * 119.99949 * 180.02562 * 18 17 16 20 20 C 1.50704 * 120.00504 * 359.97438 * 18 17 16 21 21 C 1.50692 * 109.47690 * 180.02562 * 20 18 17 22 22 N 1.33240 * 125.53070 * 269.69828 * 21 20 18 23 23 C 1.30825 * 109.83212 * 179.85100 * 22 21 20 24 24 N 1.34426 * 108.07849 * 0.40573 * 23 22 21 25 25 H 0.96996 * 126.82435 * 179.72168 * 24 23 22 26 26 N 1.30711 * 125.52820 * 89.99575 * 21 20 18 27 27 C 1.46839 * 118.53016 * 305.82806 * 17 16 15 28 28 C 1.47505 * 121.73848 * 153.12943 * 9 7 2 29 29 H 1.09004 * 109.76282 * 7.34710 * 28 9 7 30 30 H 0.97004 * 120.00347 * 0.02562 * 1 2 3 31 31 H 1.08995 * 109.59491 * 111.19833 * 10 9 7 32 32 H 1.09001 * 109.72230 * 350.80929 * 10 9 7 33 33 H 1.09004 * 109.47167 * 188.43330 * 11 10 9 34 34 H 1.09001 * 109.48004 * 68.41698 * 11 10 9 35 35 H 1.08996 * 109.42009 * 300.52484 * 15 13 12 36 36 H 1.08994 * 109.41960 * 180.71703 * 15 13 12 37 37 H 1.08999 * 109.64263 * 174.21241 * 16 15 13 38 38 H 1.09003 * 109.63995 * 294.63142 * 16 15 13 39 39 H 1.09004 * 109.46661 * 300.00972 * 20 18 17 40 40 H 1.08997 * 109.46858 * 60.00158 * 20 18 17 41 41 H 1.08006 * 125.95942 * 180.11933 * 23 22 21 42 42 H 1.09002 * 109.34248 * 294.02778 * 27 17 16 43 43 H 1.09000 * 109.58783 * 173.97358 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0567 -1.2215 -0.2659 9 7 1.3682 -2.3633 0.3388 10 6 0.1929 -2.3551 1.2247 11 6 0.4166 -3.3740 2.3470 12 8 0.7832 -4.6352 1.7795 13 6 1.9989 -4.6009 1.0330 14 1 2.7917 -4.2033 1.6666 15 6 2.3877 -6.0025 0.5748 16 6 1.2893 -6.5774 -0.3247 17 7 1.0382 -5.6317 -1.4215 18 6 1.1042 -6.0340 -2.7061 19 8 0.8951 -5.2425 -3.6009 20 6 1.4390 -7.4670 -3.0308 21 6 1.4493 -7.6542 -4.5260 22 7 0.4016 -8.0078 -5.2693 23 6 0.7532 -8.0771 -6.5275 24 7 2.0596 -7.7720 -6.6130 25 1 2.5987 -7.7445 -7.4189 26 7 2.4889 -7.5015 -5.3035 27 6 0.7202 -4.2378 -1.0866 28 6 1.8135 -3.6734 -0.1721 29 1 2.7549 -3.5589 -0.7095 30 1 -0.4851 0.8401 -0.0004 31 1 -0.6958 -2.6273 0.6555 32 1 0.0624 -1.3615 1.6535 33 1 -0.5019 -3.4879 2.9228 34 1 1.2149 -3.0243 3.0016 35 1 2.5166 -6.6457 1.4453 36 1 3.3238 -5.9553 0.0185 37 1 1.6138 -7.5345 -0.7332 38 1 0.3768 -6.7170 0.2549 39 1 2.4220 -7.7108 -2.6275 40 1 0.6912 -8.1243 -2.5872 41 1 0.1077 -8.3389 -7.3530 42 1 -0.2402 -4.2002 -0.5723 43 1 0.6676 -3.6454 -2.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074379308.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:35 Heat of formation + Delta-G solvation = 18.686947 kcal Electronic energy + Delta-G solvation = -28072.244857 eV Core-core repulsion = 24154.431820 eV Total energy + Delta-G solvation = -3917.813037 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.06488 -41.46872 -40.01065 -37.12952 -36.43438 -34.40557 -33.49675 -33.05965 -32.65037 -31.22027 -30.13015 -28.98855 -26.13766 -25.62207 -24.42504 -23.73259 -22.92159 -22.09213 -20.62419 -19.65641 -19.18632 -18.90719 -18.32345 -17.11532 -17.01137 -16.95932 -16.71012 -16.27756 -16.12195 -15.94525 -15.53456 -15.48285 -14.85805 -14.68192 -14.39217 -14.29730 -13.94953 -13.70297 -13.35677 -13.16097 -13.08292 -13.02739 -12.81571 -12.61104 -12.41104 -12.20312 -12.14591 -11.84864 -11.66291 -11.23525 -11.18290 -11.07677 -10.93001 -10.76237 -10.58011 -10.49950 -9.68401 -8.71214 -7.94015 -5.42075 0.65681 1.42902 1.44292 1.51728 1.60708 1.67543 1.86891 2.19936 2.45697 2.92505 3.16549 3.20342 3.46936 3.59090 3.70432 3.91559 4.04951 4.14864 4.17339 4.24062 4.29173 4.40966 4.47201 4.55349 4.57087 4.60342 4.68232 4.84890 4.88927 4.93532 5.01526 5.08476 5.24043 5.26724 5.34234 5.36066 5.48701 5.57349 5.59619 6.25189 6.27973 6.37630 6.47750 7.02613 7.11088 7.16791 7.69975 8.25320 9.10430 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.015368 B = 0.003661 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.520561 B = 7646.618992 C = 8833.758766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.045 4.045 3 Si 0.971 3.029 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.272 1.272 7 C -0.269 4.269 8 H 0.066 0.934 9 N -0.602 5.602 10 C 0.143 3.857 11 C 0.053 3.947 12 O -0.381 6.381 13 C 0.085 3.915 14 H 0.050 0.950 15 C -0.117 4.117 16 C 0.105 3.895 17 N -0.602 5.602 18 C 0.514 3.486 19 O -0.595 6.595 20 C -0.039 4.039 21 C 0.232 3.768 22 N -0.576 5.576 23 C 0.273 3.727 24 N -0.476 5.476 25 H 0.457 0.543 26 N -0.340 5.340 27 C 0.127 3.873 28 C 0.130 3.870 29 H 0.059 0.941 30 H 0.252 0.748 31 H 0.000 1.000 32 H 0.066 0.934 33 H 0.109 0.891 34 H 0.046 0.954 35 H 0.116 0.884 36 H 0.092 0.908 37 H 0.130 0.870 38 H 0.081 0.919 39 H 0.149 0.851 40 H 0.151 0.849 41 H 0.273 0.727 42 H 0.050 0.950 43 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.131 -21.738 -4.274 22.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.241 4.241 3 Si 0.798 3.202 4 H -0.207 1.207 5 H -0.217 1.217 6 H -0.197 1.197 7 C -0.399 4.399 8 H 0.083 0.917 9 N -0.326 5.326 10 C 0.017 3.983 11 C -0.024 4.024 12 O -0.300 6.300 13 C 0.026 3.974 14 H 0.068 0.932 15 C -0.155 4.155 16 C -0.016 4.016 17 N -0.334 5.334 18 C 0.302 3.698 19 O -0.475 6.475 20 C -0.080 4.080 21 C -0.051 4.051 22 N -0.305 5.305 23 C -0.025 4.025 24 N -0.196 5.196 25 H 0.306 0.694 26 N -0.171 5.171 27 C 0.002 3.998 28 C 0.022 3.978 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.018 0.982 32 H 0.084 0.916 33 H 0.127 0.873 34 H 0.064 0.936 35 H 0.134 0.866 36 H 0.111 0.889 37 H 0.148 0.852 38 H 0.099 0.901 39 H 0.167 0.833 40 H 0.169 0.831 41 H 0.288 0.712 42 H 0.069 0.931 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 4.184 -21.199 -4.285 22.029 hybrid contribution 0.262 2.132 -1.152 2.438 sum 4.446 -19.067 -5.437 20.319 Atomic orbital electron populations 1.70172 1.06632 1.26169 1.54670 1.25824 0.96099 1.01545 1.00633 0.85305 0.77585 0.78962 0.78352 1.20670 1.21736 1.19740 1.19425 0.92635 0.85554 1.42277 0.91655 1.44544 1.33849 1.01607 1.52556 1.21308 0.87850 0.98484 0.90608 1.23139 1.00439 0.84038 0.94831 1.87730 1.41804 1.31129 1.69341 1.22306 0.86702 0.96868 0.91564 0.93175 1.21874 0.98988 0.93421 1.01187 1.22086 0.99786 0.92361 0.87344 1.48259 1.68708 1.10372 1.06099 1.20978 0.76185 0.90735 0.81896 1.90704 1.52033 1.57223 1.47564 1.20053 1.08197 0.93069 0.86694 1.23683 0.86779 0.97032 0.97626 1.70331 1.31367 1.25412 1.03375 1.27015 0.85162 0.93445 0.96857 1.48008 1.10442 1.52872 1.08243 0.69406 1.77856 1.24171 1.25479 0.89544 1.21656 0.98902 0.81446 0.97806 1.21758 0.95479 0.86511 0.94011 0.92309 0.93877 0.98223 0.91579 0.87349 0.93566 0.86558 0.88936 0.85203 0.90113 0.83315 0.83125 0.71155 0.93126 0.94559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.05 11.14 21.65 0.24 -55.81 16 2 C -0.04 -2.56 4.96 84.86 0.42 -2.14 16 3 Si 0.97 45.84 29.58 68.60 2.03 47.87 16 4 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 6 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 7 C -0.27 -15.24 9.72 84.03 0.82 -14.43 16 8 H 0.07 3.64 7.88 -2.92 -0.02 3.62 16 9 N -0.60 -30.95 2.73 -672.59 -1.84 -32.79 16 10 C 0.14 6.96 4.91 86.32 0.42 7.38 16 11 C 0.05 1.99 6.97 72.06 0.50 2.49 16 12 O -0.38 -13.21 9.51 -148.98 -1.42 -14.63 16 13 C 0.08 2.80 2.76 30.49 0.08 2.89 16 14 H 0.05 1.71 8.12 -2.39 -0.02 1.69 16 15 C -0.12 -2.50 5.83 30.48 0.18 -2.33 16 16 C 0.11 2.20 6.16 86.34 0.53 2.74 16 17 N -0.60 -19.51 2.97 -818.80 -2.43 -21.95 16 18 C 0.51 17.54 7.70 87.66 0.67 18.21 16 19 O -0.59 -27.50 15.45 -3.04 -0.05 -27.54 16 20 C -0.04 -0.88 4.68 29.10 0.14 -0.74 16 21 C 0.23 6.44 6.63 138.63 0.92 7.36 16 22 N -0.58 -15.09 11.19 -191.81 -2.15 -17.24 16 23 C 0.27 4.58 13.13 180.36 2.37 6.94 16 24 N -0.48 -8.49 7.45 -60.49 -0.45 -8.94 16 25 H 0.46 4.28 8.96 -213.10 -1.91 2.37 16 26 N -0.34 -9.30 12.80 -51.34 -0.66 -9.96 16 27 C 0.13 5.54 5.61 86.42 0.48 6.03 16 28 C 0.13 5.58 3.01 44.97 0.14 5.72 16 29 H 0.06 2.64 7.99 -2.38 -0.02 2.62 16 30 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 31 H 0.00 -0.02 7.14 -2.39 -0.02 -0.03 16 32 H 0.07 3.58 6.14 -2.39 -0.01 3.56 16 33 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 34 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.09 1.79 8.14 -2.39 -0.02 1.78 16 37 H 0.13 1.48 5.95 -2.39 -0.01 1.46 16 38 H 0.08 1.74 7.94 -2.39 -0.02 1.72 16 39 H 0.15 2.32 7.71 -2.38 -0.02 2.30 16 40 H 0.15 2.44 7.93 -2.39 -0.02 2.42 16 41 H 0.27 1.11 8.06 -2.91 -0.02 1.09 16 42 H 0.05 2.36 6.51 -2.39 -0.02 2.34 16 43 H 0.04 1.92 7.01 -2.39 -0.02 1.91 16 Total: -1.00 -88.28 344.42 0.10 -88.18 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -0.86 Total: 12.68 kcal Atomic # 6 Polarization: 32.45 SS G_CDS: 7.68 Total: 40.12 kcal Atomic # 7 Polarization: -139.41 SS G_CDS: -7.28 Total: -146.69 kcal Atomic # 8 Polarization: -40.71 SS G_CDS: -1.46 Total: -42.17 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -88.28 0.10 -88.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074379308.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.869 kcal (2) G-P(sol) polarization free energy of solvation -88.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds