Wall clock time and date at job start Fri Apr 10 2020 18:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86806 * 119.99856 * 2 1 4 4 H 1.48504 * 109.46970 * 270.00102 * 3 2 1 5 5 H 1.48498 * 109.47070 * 29.99845 * 3 2 1 6 6 H 1.48493 * 109.47128 * 150.00296 * 3 2 1 7 7 C 1.38816 * 120.00207 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99626 * 164.73895 * 7 2 1 9 9 N 1.36929 * 119.99864 * 344.73766 * 7 2 1 10 10 C 1.47353 * 121.30574 * 332.51044 * 9 7 2 11 11 C 1.53189 * 108.80910 * 230.23257 * 10 9 7 12 12 O 1.43150 * 109.73918 * 308.79577 * 11 10 9 13 13 C 1.42606 * 113.62335 * 61.69070 * 12 11 10 14 14 H 1.08998 * 109.34414 * 55.56790 * 13 12 11 15 15 C 1.52781 * 111.11552 * 176.35604 * 13 12 11 16 16 C 1.53372 * 108.81579 * 182.54328 * 15 13 12 17 17 N 1.46841 * 109.24170 * 306.15968 * 16 15 13 18 18 C 1.34776 * 120.40696 * 232.25790 * 17 16 15 19 19 O 1.21276 * 119.99488 * 180.02562 * 18 17 16 20 20 C 1.50701 * 120.00190 * 359.97438 * 18 17 16 21 21 C 1.50693 * 109.46942 * 180.02562 * 20 18 17 22 22 N 1.33246 * 125.53229 * 90.00045 * 21 20 18 23 23 C 1.30825 * 109.82884 * 179.97438 * 22 21 20 24 24 N 1.34423 * 108.08285 * 0.02562 * 23 22 21 25 25 H 0.96997 * 126.82424 * 180.02562 * 24 23 22 26 26 N 1.30716 * 125.52575 * 269.69156 * 21 20 18 27 27 C 1.47127 * 119.18142 * 52.53161 * 17 16 15 28 28 C 1.46883 * 121.30504 * 152.50880 * 9 7 2 29 29 H 1.08988 * 109.65835 * 247.65623 * 28 9 7 30 30 H 0.97000 * 120.00569 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.57980 * 110.43523 * 10 9 7 32 32 H 1.08992 * 109.58058 * 350.03593 * 10 9 7 33 33 H 1.08995 * 109.42580 * 188.71573 * 11 10 9 34 34 H 1.09000 * 109.42398 * 68.87696 * 11 10 9 35 35 H 1.09004 * 109.58222 * 62.74899 * 15 13 12 36 36 H 1.08995 * 109.58198 * 302.34430 * 15 13 12 37 37 H 1.08995 * 109.50892 * 186.22854 * 16 15 13 38 38 H 1.09002 * 109.50789 * 66.09042 * 16 15 13 39 39 H 1.09003 * 109.46715 * 300.00236 * 20 18 17 40 40 H 1.09003 * 109.46673 * 60.00027 * 20 18 17 41 41 H 1.08010 * 125.95449 * 179.97438 * 23 22 21 42 42 H 1.08999 * 109.72982 * 66.15373 * 27 17 16 43 43 H 1.08994 * 109.72847 * 186.83141 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0617 -1.2184 -0.2467 9 7 1.3618 -2.3672 0.3111 10 6 0.1816 -2.3743 1.1933 11 6 0.3868 -3.4297 2.2845 12 8 0.7506 -4.6785 1.6868 13 6 1.9751 -4.6279 0.9577 14 1 2.7690 -4.2639 1.6099 15 6 2.3537 -6.0074 0.4212 16 6 3.7052 -5.9053 -0.2967 17 7 3.6357 -4.8453 -1.3105 18 6 3.9952 -5.0959 -2.5851 19 8 3.9353 -4.2148 -3.4163 20 6 4.4725 -6.4705 -2.9771 21 6 4.8099 -6.4852 -4.4457 22 7 6.0027 -6.2047 -4.9690 23 6 5.9519 -6.3116 -6.2719 24 7 4.7016 -6.6688 -6.6128 25 1 4.3651 -6.8230 -7.5094 26 7 3.9812 -6.7808 -5.4124 27 6 3.1747 -3.5049 -0.9166 28 6 1.8155 -3.6590 -0.2209 29 1 1.0744 -4.0488 -0.9185 30 1 -0.4851 0.8400 0.0004 31 1 -0.7076 -2.6181 0.6118 32 1 0.0626 -1.3928 1.6520 33 1 -0.5380 -3.5532 2.8479 34 1 1.1801 -3.1053 2.9579 35 1 1.5923 -6.3481 -0.2806 36 1 2.4320 -6.7124 1.2488 37 1 3.9341 -6.8556 -0.7787 38 1 4.4845 -5.6663 0.4270 39 1 5.3601 -6.7256 -2.3981 40 1 3.6865 -7.1988 -2.7771 41 1 6.7715 -6.1417 -6.9546 42 1 3.8932 -3.0553 -0.2312 43 1 3.0675 -2.8778 -1.8016 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074379309.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:38 Heat of formation + Delta-G solvation = 46.534307 kcal Electronic energy + Delta-G solvation = -27960.182963 eV Core-core repulsion = 24043.577478 eV Total energy + Delta-G solvation = -3916.605485 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.22984 -40.07282 -38.52169 -36.03932 -34.69394 -33.46228 -32.02221 -31.61740 -31.35793 -30.02860 -28.99387 -26.94327 -25.04959 -23.91203 -22.99774 -22.16659 -21.59371 -20.64371 -19.66022 -18.87200 -18.34801 -17.24329 -16.80746 -15.81052 -15.76063 -15.39704 -15.19473 -15.02909 -14.91881 -14.56244 -13.96654 -13.84173 -13.55450 -13.26620 -13.03750 -12.88466 -12.69236 -12.51482 -12.26606 -12.05547 -11.81997 -11.32604 -11.00159 -10.92724 -10.81993 -10.57903 -10.30403 -10.24006 -10.22410 -10.18053 -9.96780 -9.93803 -9.60015 -9.46809 -8.97317 -8.51998 -8.33637 -6.71126 -5.82289 -3.27469 1.47683 2.49409 2.66607 2.82072 3.26323 3.37457 3.44256 3.45706 3.92861 4.25899 4.44910 4.47346 4.64236 4.75470 4.90200 5.20450 5.20864 5.30425 5.35071 5.38939 5.42315 5.55675 5.71164 5.77055 5.88875 5.96564 6.05508 6.11869 6.16930 6.22498 6.27474 6.34662 6.48227 6.66953 6.72631 6.86520 6.89616 7.14608 7.51737 7.60449 7.73501 7.90592 7.93391 8.33807 8.38223 9.11776 9.75196 10.32956 11.25945 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.013905 B = 0.003855 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.244097 B = 7260.769447 C = 8705.298939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.007 3.993 3 Si 0.903 3.097 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.258 4.258 8 H 0.072 0.928 9 N -0.588 5.588 10 C 0.143 3.857 11 C 0.039 3.961 12 O -0.389 6.389 13 C 0.076 3.924 14 H 0.053 0.947 15 C -0.125 4.125 16 C 0.110 3.890 17 N -0.611 5.611 18 C 0.521 3.479 19 O -0.528 6.528 20 C -0.049 4.049 21 C 0.251 3.749 22 N -0.534 5.534 23 C 0.261 3.739 24 N -0.484 5.484 25 H 0.441 0.559 26 N -0.303 5.303 27 C 0.126 3.874 28 C 0.137 3.863 29 H 0.037 0.963 30 H 0.255 0.745 31 H 0.028 0.972 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.041 0.959 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.121 0.879 40 H 0.117 0.883 41 H 0.222 0.778 42 H 0.073 0.927 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.924 -16.564 -5.046 19.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.192 4.192 3 Si 0.732 3.268 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.203 1.203 7 C -0.387 4.387 8 H 0.090 0.910 9 N -0.313 5.313 10 C 0.017 3.983 11 C -0.038 4.038 12 O -0.308 6.308 13 C 0.017 3.983 14 H 0.071 0.929 15 C -0.164 4.164 16 C -0.013 4.013 17 N -0.345 5.345 18 C 0.307 3.693 19 O -0.403 6.403 20 C -0.091 4.091 21 C -0.032 4.032 22 N -0.262 5.262 23 C -0.038 4.038 24 N -0.203 5.203 25 H 0.286 0.714 26 N -0.132 5.132 27 C 0.004 3.996 28 C 0.029 3.971 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.046 0.954 32 H 0.113 0.887 33 H 0.099 0.901 34 H 0.059 0.941 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.091 0.909 39 H 0.139 0.861 40 H 0.135 0.865 41 H 0.238 0.762 42 H 0.092 0.908 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 9.233 -16.167 -5.128 19.311 hybrid contribution 0.351 1.160 -0.819 1.463 sum 9.584 -15.007 -5.947 18.773 Atomic orbital electron populations 1.70013 1.05299 1.25652 1.53580 1.25068 0.95311 0.98444 1.00402 0.86291 0.79128 0.83484 0.77881 1.21228 1.21504 1.20348 1.19129 0.92226 0.84040 1.43317 0.91043 1.44037 1.33253 1.01020 1.52978 1.21431 0.88910 0.97860 0.90081 1.23328 0.98912 0.85296 0.96306 1.87739 1.40455 1.33107 1.69543 1.22424 0.86961 0.94928 0.94030 0.92937 1.21853 0.96860 0.97191 1.00462 1.21744 0.97582 0.90798 0.91191 1.48221 1.65498 1.12703 1.08093 1.20079 0.77785 0.89363 0.82065 1.90745 1.53184 1.46976 1.49439 1.19966 1.04259 0.97392 0.87527 1.23332 0.87196 0.96662 0.96043 1.70347 1.24827 1.24154 1.06909 1.26046 0.89005 0.95405 0.93379 1.48069 1.09090 1.53719 1.09375 0.71371 1.78000 1.18758 1.26131 0.90298 1.21849 0.95068 0.81449 1.01195 1.21413 0.94087 0.88592 0.93045 0.94521 0.93512 0.95437 0.88716 0.90095 0.94108 0.90747 0.90147 0.89498 0.90882 0.86085 0.86483 0.76157 0.90849 0.88044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.12 11.16 55.49 0.62 -25.50 16 2 C 0.01 0.19 4.99 -17.43 -0.09 0.10 16 3 Si 0.90 21.79 29.58 -169.99 -5.03 16.76 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.26 -6.98 8.88 -15.06 -0.13 -7.11 16 8 H 0.07 1.88 6.27 -52.49 -0.33 1.55 16 9 N -0.59 -14.75 3.04 -164.08 -0.50 -15.25 16 10 C 0.14 3.43 5.42 -3.48 -0.02 3.41 16 11 C 0.04 0.77 6.95 37.26 0.26 1.03 16 12 O -0.39 -7.62 10.49 -35.23 -0.37 -7.99 16 13 C 0.08 1.37 2.47 -26.63 -0.07 1.30 16 14 H 0.05 0.95 8.13 -51.93 -0.42 0.53 16 15 C -0.12 -1.65 5.82 -26.65 -0.16 -1.80 16 16 C 0.11 1.24 6.31 -3.66 -0.02 1.22 16 17 N -0.61 -9.59 2.97 -172.40 -0.51 -10.10 16 18 C 0.52 8.62 7.69 -10.99 -0.08 8.53 16 19 O -0.53 -11.31 15.43 5.56 0.09 -11.23 16 20 C -0.05 -0.59 4.67 -29.04 -0.14 -0.72 16 21 C 0.25 3.55 6.63 -156.85 -1.04 2.51 16 22 N -0.53 -7.15 11.19 -11.98 -0.13 -7.29 16 23 C 0.26 2.39 13.13 -90.67 -1.19 1.20 16 24 N -0.48 -4.62 7.45 29.53 0.22 -4.41 16 25 H 0.44 2.40 8.96 -182.34 -1.63 0.76 16 26 N -0.30 -4.24 12.80 32.42 0.41 -3.83 16 27 C 0.13 2.49 4.50 -3.46 -0.02 2.48 16 28 C 0.14 2.92 3.04 -67.27 -0.20 2.72 16 29 H 0.04 0.88 8.14 -51.94 -0.42 0.46 16 30 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.09 2.47 6.23 -51.93 -0.32 2.14 16 33 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.09 0.67 5.90 -51.93 -0.31 0.36 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.12 1.11 7.96 -51.93 -0.41 0.69 16 40 H 0.12 1.11 7.66 -51.93 -0.40 0.71 16 41 H 0.22 0.79 8.06 -52.48 -0.42 0.37 16 42 H 0.07 1.44 7.40 -51.93 -0.38 1.06 16 43 H 0.10 2.36 6.80 -51.93 -0.35 2.01 16 LS Contribution 344.60 15.07 5.19 5.19 Total: -1.00 -37.64 344.60 -9.99 -47.62 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -7.08 Total: 1.15 kcal Atomic # 6 Polarization: 17.75 SS G_CDS: -2.90 Total: 14.85 kcal Atomic # 7 Polarization: -66.47 SS G_CDS: 0.11 Total: -66.36 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.28 Total: -19.22 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -37.64 -9.99 -47.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074379309.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.158 kcal (2) G-P(sol) polarization free energy of solvation -37.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds