Wall clock time and date at job start Fri Apr 10 2020 18:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86806 * 119.99856 * 2 1 4 4 H 1.48504 * 109.46970 * 270.00102 * 3 2 1 5 5 H 1.48498 * 109.47070 * 29.99845 * 3 2 1 6 6 H 1.48493 * 109.47128 * 150.00296 * 3 2 1 7 7 C 1.38816 * 120.00207 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99626 * 164.73895 * 7 2 1 9 9 N 1.36929 * 119.99864 * 344.73766 * 7 2 1 10 10 C 1.47353 * 121.30574 * 332.51044 * 9 7 2 11 11 C 1.53189 * 108.80910 * 230.23257 * 10 9 7 12 12 O 1.43150 * 109.73918 * 308.79577 * 11 10 9 13 13 C 1.42606 * 113.62335 * 61.69070 * 12 11 10 14 14 H 1.08998 * 109.34414 * 55.56790 * 13 12 11 15 15 C 1.52781 * 111.11552 * 176.35604 * 13 12 11 16 16 C 1.53372 * 108.81579 * 182.54328 * 15 13 12 17 17 N 1.46841 * 109.24170 * 306.15968 * 16 15 13 18 18 C 1.34776 * 120.40696 * 232.25790 * 17 16 15 19 19 O 1.21276 * 119.99488 * 180.02562 * 18 17 16 20 20 C 1.50701 * 120.00190 * 359.97438 * 18 17 16 21 21 C 1.50693 * 109.46942 * 180.02562 * 20 18 17 22 22 N 1.33246 * 125.53229 * 90.00045 * 21 20 18 23 23 C 1.30825 * 109.82884 * 179.97438 * 22 21 20 24 24 N 1.34423 * 108.08285 * 0.02562 * 23 22 21 25 25 H 0.96997 * 126.82424 * 180.02562 * 24 23 22 26 26 N 1.30716 * 125.52575 * 269.69156 * 21 20 18 27 27 C 1.47127 * 119.18142 * 52.53161 * 17 16 15 28 28 C 1.46883 * 121.30504 * 152.50880 * 9 7 2 29 29 H 1.08988 * 109.65835 * 247.65623 * 28 9 7 30 30 H 0.97000 * 120.00569 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.57980 * 110.43523 * 10 9 7 32 32 H 1.08992 * 109.58058 * 350.03593 * 10 9 7 33 33 H 1.08995 * 109.42580 * 188.71573 * 11 10 9 34 34 H 1.09000 * 109.42398 * 68.87696 * 11 10 9 35 35 H 1.09004 * 109.58222 * 62.74899 * 15 13 12 36 36 H 1.08995 * 109.58198 * 302.34430 * 15 13 12 37 37 H 1.08995 * 109.50892 * 186.22854 * 16 15 13 38 38 H 1.09002 * 109.50789 * 66.09042 * 16 15 13 39 39 H 1.09003 * 109.46715 * 300.00236 * 20 18 17 40 40 H 1.09003 * 109.46673 * 60.00027 * 20 18 17 41 41 H 1.08010 * 125.95449 * 179.97438 * 23 22 21 42 42 H 1.08999 * 109.72982 * 66.15373 * 27 17 16 43 43 H 1.08994 * 109.72847 * 186.83141 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0617 -1.2184 -0.2467 9 7 1.3618 -2.3672 0.3111 10 6 0.1816 -2.3743 1.1933 11 6 0.3868 -3.4297 2.2845 12 8 0.7506 -4.6785 1.6868 13 6 1.9751 -4.6279 0.9577 14 1 2.7690 -4.2639 1.6099 15 6 2.3537 -6.0074 0.4212 16 6 3.7052 -5.9053 -0.2967 17 7 3.6357 -4.8453 -1.3105 18 6 3.9952 -5.0959 -2.5851 19 8 3.9353 -4.2148 -3.4163 20 6 4.4725 -6.4705 -2.9771 21 6 4.8099 -6.4852 -4.4457 22 7 6.0027 -6.2047 -4.9690 23 6 5.9519 -6.3116 -6.2719 24 7 4.7016 -6.6688 -6.6128 25 1 4.3651 -6.8230 -7.5094 26 7 3.9812 -6.7808 -5.4124 27 6 3.1747 -3.5049 -0.9166 28 6 1.8155 -3.6590 -0.2209 29 1 1.0744 -4.0488 -0.9185 30 1 -0.4851 0.8400 0.0004 31 1 -0.7076 -2.6181 0.6118 32 1 0.0626 -1.3928 1.6520 33 1 -0.5380 -3.5532 2.8479 34 1 1.1801 -3.1053 2.9579 35 1 1.5923 -6.3481 -0.2806 36 1 2.4320 -6.7124 1.2488 37 1 3.9341 -6.8556 -0.7787 38 1 4.4845 -5.6663 0.4270 39 1 5.3601 -6.7256 -2.3981 40 1 3.6865 -7.1988 -2.7771 41 1 6.7715 -6.1417 -6.9546 42 1 3.8932 -3.0553 -0.2312 43 1 3.0675 -2.8778 -1.8016 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074379309.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:38 Heat of formation + Delta-G solvation = 17.888046 kcal Electronic energy + Delta-G solvation = -27961.425158 eV Core-core repulsion = 24043.577478 eV Total energy + Delta-G solvation = -3917.847680 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.06454 -41.44377 -40.03394 -37.42939 -36.53788 -34.42695 -33.48556 -33.00420 -32.63161 -31.49222 -30.14938 -28.72703 -26.60919 -25.45250 -23.95877 -23.60086 -22.94635 -21.84580 -21.31124 -19.98520 -19.19241 -18.69504 -18.48064 -17.23153 -17.07658 -16.82837 -16.66109 -16.26692 -16.10562 -15.89799 -15.58526 -15.46147 -14.92309 -14.69695 -14.53483 -14.38115 -14.00395 -13.79357 -13.30429 -13.16004 -13.04727 -12.97020 -12.82375 -12.69018 -12.38728 -12.31206 -12.05871 -11.90751 -11.72331 -11.25546 -11.22159 -11.07661 -10.94258 -10.76263 -10.59068 -10.51952 -9.69664 -8.75071 -7.93224 -5.41787 0.65819 1.42610 1.43821 1.53185 1.56921 1.65078 1.86816 2.15247 2.45746 2.85016 3.15930 3.22223 3.45415 3.56075 3.70284 3.87880 3.98963 4.09471 4.16306 4.21340 4.27780 4.39501 4.42872 4.51821 4.54591 4.58279 4.60793 4.72890 4.85362 4.88307 5.02176 5.11524 5.14122 5.25507 5.33946 5.35664 5.44998 5.53279 5.60547 6.25128 6.27775 6.34625 6.38953 7.03240 7.10814 7.12607 7.71054 8.26276 9.13050 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.013905 B = 0.003855 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.244097 B = 7260.769447 C = 8705.298939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.048 4.048 3 Si 0.966 3.034 4 H -0.292 1.292 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.262 4.262 8 H 0.074 0.926 9 N -0.607 5.607 10 C 0.147 3.853 11 C 0.053 3.947 12 O -0.392 6.392 13 C 0.080 3.920 14 H 0.059 0.941 15 C -0.117 4.117 16 C 0.106 3.894 17 N -0.608 5.608 18 C 0.516 3.484 19 O -0.589 6.589 20 C -0.040 4.040 21 C 0.232 3.768 22 N -0.573 5.573 23 C 0.273 3.727 24 N -0.477 5.477 25 H 0.457 0.543 26 N -0.343 5.343 27 C 0.141 3.859 28 C 0.133 3.867 29 H 0.002 0.998 30 H 0.251 0.749 31 H -0.006 1.006 32 H 0.070 0.930 33 H 0.109 0.891 34 H 0.051 0.949 35 H 0.066 0.934 36 H 0.118 0.882 37 H 0.136 0.864 38 H 0.098 0.902 39 H 0.157 0.843 40 H 0.146 0.854 41 H 0.273 0.727 42 H 0.074 0.926 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.369 -19.264 -4.323 23.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.243 4.243 3 Si 0.793 3.207 4 H -0.219 1.219 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.392 4.392 8 H 0.092 0.908 9 N -0.332 5.332 10 C 0.021 3.979 11 C -0.025 4.025 12 O -0.311 6.311 13 C 0.020 3.980 14 H 0.077 0.923 15 C -0.156 4.156 16 C -0.015 4.015 17 N -0.341 5.341 18 C 0.304 3.696 19 O -0.469 6.469 20 C -0.081 4.081 21 C -0.052 4.052 22 N -0.302 5.302 23 C -0.025 4.025 24 N -0.196 5.196 25 H 0.306 0.694 26 N -0.173 5.173 27 C 0.018 3.982 28 C 0.026 3.974 29 H 0.019 0.981 30 H 0.060 0.940 31 H 0.012 0.988 32 H 0.088 0.912 33 H 0.127 0.873 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.136 0.864 37 H 0.154 0.846 38 H 0.116 0.884 39 H 0.175 0.825 40 H 0.164 0.836 41 H 0.289 0.711 42 H 0.093 0.907 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.693 -18.939 -4.398 22.688 hybrid contribution -0.411 1.975 -1.185 2.340 sum 11.281 -16.964 -5.582 21.123 Atomic orbital electron populations 1.70172 1.06693 1.25973 1.55340 1.25835 0.96078 1.01539 1.00890 0.85307 0.78414 0.79581 0.77372 1.21872 1.21356 1.18882 1.19448 0.92558 0.85059 1.42092 0.90841 1.44348 1.33293 1.01965 1.53573 1.21300 0.87573 0.98263 0.90768 1.23158 1.00723 0.84008 0.94608 1.87750 1.41379 1.32461 1.69486 1.22549 0.86474 0.96872 0.92063 0.92333 1.21914 0.97565 0.94550 1.01549 1.22199 0.97128 0.91350 0.90827 1.48287 1.64658 1.11975 1.09185 1.20969 0.76561 0.90658 0.81365 1.90714 1.55733 1.49284 1.51160 1.20077 1.06464 0.94309 0.87270 1.23700 0.87606 0.96971 0.96894 1.70334 1.25110 1.25829 1.08935 1.27028 0.89643 0.92748 0.93038 1.48013 1.09132 1.53195 1.09273 0.69448 1.77878 1.20310 1.27462 0.91684 1.21325 0.94395 0.83706 0.98791 1.21572 0.93722 0.87821 0.94300 0.98072 0.93985 0.98810 0.91208 0.87346 0.93047 0.91473 0.86384 0.84649 0.88405 0.82543 0.83598 0.71130 0.90743 0.92746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.78 11.16 21.65 0.24 -56.54 16 2 C -0.05 -2.74 4.99 84.86 0.42 -2.32 16 3 Si 0.97 46.10 29.58 68.60 2.03 48.13 16 4 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 5 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 6 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.26 -14.69 8.88 84.04 0.75 -13.95 16 8 H 0.07 4.01 6.27 -2.91 -0.02 3.99 16 9 N -0.61 -31.62 3.04 -673.02 -2.05 -33.67 16 10 C 0.15 7.32 5.42 86.28 0.47 7.79 16 11 C 0.05 2.03 6.95 72.05 0.50 2.53 16 12 O -0.39 -14.69 10.49 -148.98 -1.56 -16.26 16 13 C 0.08 2.72 2.47 30.66 0.08 2.80 16 14 H 0.06 1.97 8.13 -2.39 -0.02 1.95 16 15 C -0.12 -2.66 5.82 30.65 0.18 -2.49 16 16 C 0.11 1.93 6.31 86.44 0.55 2.48 16 17 N -0.61 -18.36 2.97 -817.75 -2.43 -20.79 16 18 C 0.52 16.74 7.69 87.66 0.67 17.41 16 19 O -0.59 -26.19 15.43 -3.02 -0.05 -26.24 16 20 C -0.04 -0.85 4.67 29.10 0.14 -0.71 16 21 C 0.23 6.23 6.63 138.63 0.92 7.15 16 22 N -0.57 -14.37 11.19 -191.81 -2.15 -16.52 16 23 C 0.27 4.39 13.13 180.36 2.37 6.75 16 24 N -0.48 -8.37 7.45 -60.49 -0.45 -8.82 16 25 H 0.46 4.25 8.96 -213.10 -1.91 2.34 16 26 N -0.34 -9.32 12.80 -51.34 -0.66 -9.97 16 27 C 0.14 5.75 4.50 86.42 0.39 6.14 16 28 C 0.13 5.85 3.04 45.21 0.14 5.99 16 29 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 30 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 31 H -0.01 -0.34 8.14 -2.38 -0.02 -0.36 16 32 H 0.07 3.81 6.23 -2.39 -0.01 3.79 16 33 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 34 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.12 1.92 8.14 -2.39 -0.02 1.91 16 37 H 0.14 1.26 5.90 -2.39 -0.01 1.24 16 38 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.16 2.17 7.96 -2.39 -0.02 2.15 16 40 H 0.15 2.22 7.66 -2.39 -0.02 2.20 16 41 H 0.27 0.92 8.06 -2.91 -0.02 0.90 16 42 H 0.07 2.97 7.40 -2.39 -0.02 2.95 16 43 H 0.05 2.71 6.80 -2.39 -0.02 2.70 16 Total: -1.00 -89.93 344.60 -0.37 -90.29 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -0.86 Total: 10.81 kcal Atomic # 6 Polarization: 32.01 SS G_CDS: 7.56 Total: 39.57 kcal Atomic # 7 Polarization: -138.82 SS G_CDS: -7.49 Total: -146.31 kcal Atomic # 8 Polarization: -40.89 SS G_CDS: -1.61 Total: -42.50 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -89.93 -0.37 -90.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074379309.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.181 kcal (2) G-P(sol) polarization free energy of solvation -89.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds