Wall clock time and date at job start Fri Apr 10 2020 18:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86792 * 119.99895 * 2 1 4 4 H 1.48502 * 109.47429 * 274.44477 * 3 2 1 5 5 H 1.48501 * 109.47614 * 34.44391 * 3 2 1 6 6 H 1.48501 * 109.47006 * 154.44543 * 3 2 1 7 7 C 1.38818 * 119.99868 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99769 * 163.16027 * 7 2 1 9 9 N 1.36931 * 119.99691 * 343.16285 * 7 2 1 10 10 C 1.47170 * 121.23227 * 333.76073 * 9 7 2 11 11 C 1.53229 * 108.70002 * 230.93801 * 10 9 7 12 12 O 1.43209 * 108.91631 * 308.09076 * 11 10 9 13 13 C 1.42697 * 113.79197 * 62.68992 * 12 11 10 14 14 H 1.08995 * 108.92729 * 54.24074 * 13 12 11 15 15 C 1.52504 * 110.62035 * 173.94717 * 13 12 11 16 16 C 1.53155 * 109.79478 * 60.62278 * 15 13 12 17 17 N 1.46981 * 108.44734 * 54.51778 * 16 15 13 18 18 C 1.34773 * 120.71698 * 125.44231 * 17 16 15 19 19 O 1.21282 * 120.00241 * 180.02562 * 18 17 16 20 20 C 1.50700 * 120.00165 * 0.27987 * 18 17 16 21 21 N 1.46501 * 109.47206 * 179.72471 * 20 18 17 22 22 C 1.34425 * 126.82527 * 125.00519 * 21 20 18 23 23 N 1.30828 * 108.08200 * 179.97438 * 22 21 20 24 24 C 1.33249 * 109.82609 * 359.97438 * 23 22 21 25 25 N 1.30710 * 108.94806 * 359.75785 * 24 23 22 26 26 C 1.46788 * 118.56614 * 305.72646 * 17 16 15 27 27 C 1.47599 * 121.22286 * 153.74392 * 9 7 2 28 28 H 1.08996 * 110.31857 * 7.70473 * 27 9 7 29 29 H 0.96994 * 120.00183 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.59419 * 350.69904 * 10 9 7 31 31 H 1.09001 * 109.60410 * 111.01003 * 10 9 7 32 32 H 1.08996 * 109.47439 * 68.40572 * 11 10 9 33 33 H 1.08995 * 109.47742 * 188.41945 * 11 10 9 34 34 H 1.08998 * 109.41936 * 300.52281 * 15 13 12 35 35 H 1.08997 * 109.41623 * 180.72258 * 15 13 12 36 36 H 1.09003 * 109.64318 * 294.82989 * 16 15 13 37 37 H 1.08999 * 109.81963 * 174.30830 * 16 15 13 38 38 H 1.08997 * 109.47361 * 299.72599 * 20 18 17 39 39 H 1.08997 * 109.47109 * 59.72444 * 20 18 17 40 40 H 1.08003 * 125.96070 * 359.97438 * 22 21 20 41 41 H 1.08003 * 125.52578 * 179.97438 * 24 23 22 42 42 H 1.08994 * 109.52184 * 173.93735 * 26 17 16 43 43 H 1.09007 * 109.51443 * 294.12101 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4037 2.1007 -1.3959 5 1 1.4978 2.6238 0.7919 6 1 3.5915 1.4148 0.6040 7 6 2.0103 -1.2022 -0.0005 8 1 3.0555 -1.2221 -0.2715 9 7 1.3696 -2.3628 0.3424 10 6 0.1956 -2.3527 1.2298 11 6 0.4214 -3.3682 2.3549 12 8 0.7799 -4.6287 1.7774 13 6 2.0023 -4.5981 1.0420 14 1 2.7906 -4.2032 1.6827 15 6 2.3907 -6.0010 0.5871 16 6 1.2988 -6.5723 -0.3223 17 7 1.0653 -5.6242 -1.4208 18 6 1.1451 -6.0253 -2.7050 19 8 0.9505 -5.2318 -3.6014 20 6 1.4707 -7.4610 -3.0272 21 7 1.4919 -7.6426 -4.4807 22 6 2.5007 -8.1417 -5.2157 23 7 2.1289 -8.1399 -6.4700 24 6 0.8944 -7.6495 -6.5747 25 7 0.4597 -7.3360 -5.3825 26 6 0.7495 -4.2296 -1.0892 27 6 1.8308 -3.6700 -0.1646 28 1 2.7773 -3.5583 -0.6933 29 1 -0.4850 0.8400 -0.0004 30 1 0.0678 -1.3575 1.6558 31 1 -0.6944 -2.6243 0.6621 32 1 1.2205 -3.0161 3.0072 33 1 -0.4961 -3.4808 2.9324 34 1 2.5098 -6.6446 1.4587 35 1 3.3320 -5.9567 0.0393 36 1 0.3796 -6.7057 0.2482 37 1 1.6203 -7.5314 -0.7282 38 1 2.4477 -7.7133 -2.6152 39 1 0.7132 -8.1120 -2.5907 40 1 3.4523 -8.4845 -4.8368 41 1 0.3411 -7.5335 -7.4950 42 1 0.7118 -3.6373 -2.0034 43 1 -0.2159 -4.1848 -0.5850 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074399273.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:44 Heat of formation + Delta-G solvation = 60.959644 kcal Electronic energy + Delta-G solvation = -28182.840662 eV Core-core repulsion = 24266.860707 eV Total energy + Delta-G solvation = -3915.979955 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.11536 -40.22633 -38.67491 -35.89697 -34.72973 -34.10864 -31.92835 -31.59352 -31.23569 -29.78968 -28.47701 -27.19129 -24.87023 -23.95123 -22.92818 -22.19810 -22.03800 -21.54213 -19.67156 -18.39698 -17.65953 -17.20404 -16.92840 -15.92910 -15.73626 -15.52797 -15.26154 -15.10234 -14.74885 -14.49729 -14.47329 -14.09840 -13.80505 -13.57038 -13.24348 -13.02899 -12.70447 -12.42717 -12.37554 -12.11632 -11.88356 -11.46622 -11.13349 -11.04932 -10.84575 -10.68357 -10.31842 -10.27887 -10.24850 -10.08841 -10.04156 -9.80795 -9.73110 -9.43520 -9.07050 -8.67273 -8.36767 -6.82992 -5.91854 -3.35904 1.55675 2.09601 2.61920 2.93485 3.07483 3.31019 3.38415 3.39799 4.16647 4.21370 4.24117 4.35184 4.39620 4.69515 4.75911 4.83094 4.98057 5.17282 5.21511 5.24586 5.31246 5.50953 5.63177 5.67625 5.88901 5.94488 5.97435 6.05942 6.11763 6.19648 6.26653 6.34815 6.37996 6.53218 6.62981 6.66944 6.84026 7.01581 7.42377 7.53815 7.65103 7.79469 8.01085 8.21933 8.26868 9.02622 9.64263 10.21045 11.15742 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.015469 B = 0.003702 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.653448 B = 7562.564786 C = 8737.850408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.007 3.993 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.258 4.258 8 H 0.069 0.931 9 N -0.584 5.584 10 C 0.136 3.864 11 C 0.040 3.960 12 O -0.388 6.388 13 C 0.080 3.920 14 H 0.054 0.946 15 C -0.123 4.123 16 C 0.110 3.890 17 N -0.603 5.603 18 C 0.496 3.504 19 O -0.512 6.512 20 C 0.111 3.889 21 N -0.367 5.367 22 C 0.252 3.748 23 N -0.547 5.547 24 C 0.189 3.811 25 N -0.287 5.287 26 C 0.108 3.892 27 C 0.134 3.866 28 H 0.073 0.927 29 H 0.256 0.744 30 H 0.096 0.904 31 H 0.029 0.971 32 H 0.043 0.957 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.128 0.872 39 H 0.117 0.883 40 H 0.218 0.782 41 H 0.216 0.784 42 H 0.089 0.911 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.361 -18.146 0.598 18.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.192 4.192 3 Si 0.735 3.265 4 H -0.213 1.213 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.387 4.387 8 H 0.087 0.913 9 N -0.306 5.306 10 C 0.011 3.989 11 C -0.038 4.038 12 O -0.307 6.307 13 C 0.020 3.980 14 H 0.072 0.928 15 C -0.161 4.161 16 C -0.013 4.013 17 N -0.338 5.338 18 C 0.280 3.720 19 O -0.387 6.387 20 C -0.015 4.015 21 N -0.159 5.159 22 C -0.045 4.045 23 N -0.274 5.274 24 C -0.114 4.114 25 N -0.113 5.113 26 C -0.015 4.015 27 C 0.025 3.975 28 H 0.091 0.909 29 H 0.066 0.934 30 H 0.114 0.886 31 H 0.047 0.953 32 H 0.061 0.939 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.146 0.854 39 H 0.134 0.866 40 H 0.235 0.765 41 H 0.232 0.768 42 H 0.107 0.893 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.498 -17.458 0.084 17.805 hybrid contribution 0.666 1.195 0.261 1.393 sum 4.164 -16.263 0.345 16.791 Atomic orbital electron populations 1.70018 1.05288 1.25850 1.53072 1.25065 0.95339 0.98546 1.00296 0.86237 0.79149 0.83349 0.77788 1.21269 1.21415 1.20337 1.19159 0.92560 0.84157 1.42865 0.91336 1.44315 1.33735 1.00671 1.51868 1.21477 0.89004 0.98677 0.89739 1.23353 0.99000 0.84864 0.96594 1.87741 1.40596 1.32619 1.69767 1.22242 0.87203 0.94508 0.94049 0.92812 1.21798 0.98347 0.96449 0.99555 1.21703 0.99965 0.91084 0.88556 1.48293 1.69274 1.11872 1.04355 1.20301 0.78975 0.89394 0.83297 1.90813 1.48288 1.54166 1.45385 1.21690 1.05873 0.97447 0.76506 1.50023 1.11874 1.46665 1.07296 1.26034 0.95228 0.96042 0.87197 1.70508 1.13961 1.25011 1.17923 1.26007 0.91491 0.97001 0.96891 1.78225 1.11186 1.21951 0.99950 1.22281 1.00035 0.78413 1.00787 1.21527 0.96513 0.87265 0.92167 0.90854 0.93375 0.88638 0.95290 0.93904 0.90068 0.90191 0.90398 0.90121 0.90700 0.85406 0.86551 0.76549 0.76807 0.89283 0.91096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.34 11.14 55.49 0.62 -24.72 16 2 C 0.01 0.19 4.96 -17.43 -0.09 0.10 16 3 Si 0.91 21.27 29.59 -169.99 -5.03 16.24 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.26 -6.84 9.69 -15.06 -0.15 -6.99 16 8 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16 9 N -0.58 -13.86 2.71 -164.12 -0.45 -14.30 16 10 C 0.14 3.08 4.92 -3.56 -0.02 3.06 16 11 C 0.04 0.72 6.99 37.28 0.26 0.98 16 12 O -0.39 -6.68 9.50 -35.23 -0.33 -7.01 16 13 C 0.08 1.28 2.76 -26.89 -0.07 1.20 16 14 H 0.05 0.90 8.11 -51.93 -0.42 0.48 16 15 C -0.12 -1.36 5.82 -26.90 -0.16 -1.51 16 16 C 0.11 1.14 6.17 -3.70 -0.02 1.12 16 17 N -0.60 -8.88 2.97 -173.05 -0.51 -9.39 16 18 C 0.50 7.53 7.74 -10.99 -0.09 7.44 16 19 O -0.51 -10.64 15.17 5.56 0.08 -10.56 16 20 C 0.11 1.06 5.38 -5.19 -0.03 1.04 16 21 N -0.37 -4.53 3.40 -63.82 -0.22 -4.74 16 22 C 0.25 2.61 12.63 -90.66 -1.14 1.47 16 23 N -0.55 -7.04 11.19 -15.83 -0.18 -7.22 16 24 C 0.19 2.49 13.03 -91.81 -1.20 1.29 16 25 N -0.29 -4.39 11.84 29.29 0.35 -4.05 16 26 C 0.11 2.11 5.60 -3.95 -0.02 2.08 16 27 C 0.13 2.63 3.01 -67.29 -0.20 2.43 16 28 H 0.07 1.49 7.99 -51.93 -0.42 1.07 16 29 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.10 2.40 6.13 -51.93 -0.32 2.08 16 31 H 0.03 0.70 7.17 -51.93 -0.37 0.33 16 32 H 0.04 0.77 8.13 -51.93 -0.42 0.35 16 33 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.08 0.90 7.93 -51.93 -0.41 0.49 16 37 H 0.07 0.45 5.94 -51.93 -0.31 0.14 16 38 H 0.13 0.63 7.66 -51.93 -0.40 0.24 16 39 H 0.12 0.86 7.93 -51.93 -0.41 0.45 16 40 H 0.22 1.09 8.06 -52.48 -0.42 0.67 16 41 H 0.22 2.05 8.06 -52.48 -0.42 1.63 16 42 H 0.09 2.09 7.00 -51.93 -0.36 1.72 16 43 H 0.07 1.49 6.52 -51.93 -0.34 1.16 16 LS Contribution 344.77 15.07 5.20 5.20 Total: -1.00 -36.00 344.77 -9.24 -45.24 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -5.84 Total: 1.60 kcal Atomic # 6 Polarization: 16.64 SS G_CDS: -2.92 Total: 13.72 kcal Atomic # 7 Polarization: -64.03 SS G_CDS: -0.39 Total: -64.42 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.25 Total: -17.57 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -36.00 -9.24 -45.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074399273.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.200 kcal (2) G-P(sol) polarization free energy of solvation -36.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds