Wall clock time and date at job start Fri Apr 10 2020 18:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86799 * 119.99722 * 2 1 4 4 H 1.48501 * 109.46938 * 239.99919 * 3 2 1 5 5 H 1.48497 * 109.47348 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46865 * 120.00456 * 3 2 1 7 7 C 1.38817 * 119.99799 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99544 * 164.74287 * 7 2 1 9 9 N 1.36930 * 120.00023 * 344.74606 * 7 2 1 10 10 C 1.47353 * 121.30394 * 332.49867 * 9 7 2 11 11 C 1.53194 * 108.81020 * 230.25607 * 10 9 7 12 12 O 1.43156 * 109.74010 * 308.80311 * 11 10 9 13 13 C 1.42600 * 113.62595 * 61.67938 * 12 11 10 14 14 H 1.08996 * 109.34162 * 55.57730 * 13 12 11 15 15 C 1.52786 * 111.11683 * 176.36046 * 13 12 11 16 16 C 1.53366 * 108.81728 * 182.55222 * 15 13 12 17 17 N 1.46844 * 109.24071 * 306.15704 * 16 15 13 18 18 C 1.34771 * 120.41086 * 232.27865 * 17 16 15 19 19 O 1.21284 * 120.00391 * 179.97438 * 18 17 16 20 20 C 1.50705 * 120.00043 * 359.97438 * 18 17 16 21 21 N 1.46501 * 109.47184 * 180.02562 * 20 18 17 22 22 C 1.34426 * 126.82173 * 124.71010 * 21 20 18 23 23 N 1.30838 * 108.07592 * 179.89238 * 22 21 20 24 24 C 1.33250 * 109.82670 * 0.38157 * 23 22 21 25 25 N 1.30712 * 108.94540 * 359.76259 * 24 23 22 26 26 C 1.47135 * 119.18146 * 52.25452 * 17 16 15 27 27 C 1.46877 * 121.30533 * 152.52619 * 9 7 2 28 28 H 1.09004 * 109.65695 * 247.63012 * 27 9 7 29 29 H 0.96999 * 120.00136 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.57976 * 110.46293 * 10 9 7 31 31 H 1.08993 * 109.58658 * 350.05947 * 10 9 7 32 32 H 1.08997 * 109.43212 * 188.71572 * 11 10 9 33 33 H 1.09007 * 109.42346 * 68.87488 * 11 10 9 34 34 H 1.09003 * 109.57633 * 302.34846 * 15 13 12 35 35 H 1.09002 * 109.57900 * 62.74721 * 15 13 12 36 36 H 1.08997 * 109.51269 * 66.09159 * 16 15 13 37 37 H 1.09005 * 109.50506 * 186.23171 * 16 15 13 38 38 H 1.08999 * 109.47031 * 300.00477 * 20 18 17 39 39 H 1.08998 * 109.47113 * 59.99706 * 20 18 17 40 40 H 1.07995 * 125.96208 * 0.04031 * 22 21 20 41 41 H 1.07995 * 125.52184 * 179.72849 * 24 23 22 42 42 H 1.08993 * 109.72732 * 187.10221 * 26 17 16 43 43 H 1.09000 * 109.75668 * 66.46166 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0618 -1.2185 -0.2467 9 7 1.3618 -2.3673 0.3109 10 6 0.1816 -2.3743 1.1932 11 6 0.3870 -3.4296 2.2846 12 8 0.7511 -4.6785 1.6871 13 6 1.9755 -4.6278 0.9578 14 1 2.7693 -4.2636 1.6100 15 6 2.3543 -6.0073 0.4215 16 6 3.7057 -5.9050 -0.2963 17 7 3.6360 -4.8453 -1.3104 18 6 3.9951 -5.0960 -2.5849 19 8 3.9342 -4.2154 -3.4167 20 6 4.4723 -6.4708 -2.9768 21 7 4.7999 -6.4854 -4.4047 22 6 5.9691 -6.8491 -4.9593 23 7 5.8590 -6.7247 -6.2571 24 6 4.6423 -6.2782 -6.5666 25 7 3.9568 -6.1164 -5.4655 26 6 3.1689 -3.5064 -0.9179 27 6 1.8157 -3.6590 -0.2208 28 1 1.0745 -4.0492 -0.9184 29 1 -0.4850 0.8400 0.0004 30 1 -0.7076 -2.6184 0.6119 31 1 0.0624 -1.3928 1.6518 32 1 -0.5378 -3.5532 2.8481 33 1 1.1804 -3.1049 2.9579 34 1 2.4328 -6.7121 1.2493 35 1 1.5928 -6.3482 -0.2800 36 1 4.4851 -5.6659 0.4272 37 1 3.9347 -6.8556 -0.7782 38 1 5.3600 -6.7259 -2.3981 39 1 3.6864 -7.1990 -2.7765 40 1 6.8456 -7.1875 -4.4268 41 1 4.2814 -6.0813 -7.5653 42 1 3.0580 -2.8811 -1.8038 43 1 3.8858 -3.0517 -0.2343 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074399275.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:50 Heat of formation + Delta-G solvation = 61.095535 kcal Electronic energy + Delta-G solvation = -28071.790852 eV Core-core repulsion = 24155.816789 eV Total energy + Delta-G solvation = -3915.974063 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.15122 -40.25640 -38.66747 -36.22682 -34.80137 -34.15531 -31.97525 -31.47707 -31.26312 -30.08427 -28.47768 -26.93989 -25.12356 -24.04782 -22.63884 -22.07282 -21.99176 -21.34852 -19.79781 -19.16973 -17.74240 -17.27906 -16.78264 -16.08794 -15.77327 -15.47451 -15.26400 -15.11384 -14.82501 -14.52764 -14.23242 -14.03894 -13.93495 -13.54260 -13.16534 -13.13109 -12.90431 -12.68060 -12.53073 -12.00835 -11.91090 -11.44396 -11.07721 -11.01761 -10.93696 -10.67571 -10.34253 -10.31427 -10.28647 -10.11177 -10.04230 -9.84084 -9.68556 -9.51249 -9.07345 -8.58197 -8.52405 -6.78682 -5.88441 -3.34490 1.51987 2.05048 2.50615 2.89980 2.95971 3.33900 3.39541 3.40017 4.06848 4.14958 4.18249 4.32008 4.38362 4.62798 4.71584 4.76010 5.02630 5.13847 5.16407 5.27778 5.30213 5.38288 5.57135 5.65307 5.76539 5.82776 6.01575 6.05168 6.08613 6.15219 6.25526 6.34305 6.36892 6.51783 6.54593 6.64584 6.78409 7.06180 7.36804 7.45468 7.65512 7.81843 7.97998 8.12611 8.27617 9.04818 9.68167 10.25574 11.19684 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.014061 B = 0.003896 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.806364 B = 7184.485418 C = 8620.804643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.009 3.991 3 Si 0.904 3.096 4 H -0.281 1.281 5 H -0.289 1.289 6 H -0.283 1.283 7 C -0.262 4.262 8 H 0.071 0.929 9 N -0.587 5.587 10 C 0.143 3.857 11 C 0.039 3.961 12 O -0.389 6.389 13 C 0.076 3.924 14 H 0.053 0.947 15 C -0.125 4.125 16 C 0.110 3.890 17 N -0.609 5.609 18 C 0.499 3.501 19 O -0.506 6.506 20 C 0.111 3.889 21 N -0.369 5.369 22 C 0.252 3.748 23 N -0.546 5.546 24 C 0.190 3.810 25 N -0.285 5.285 26 C 0.126 3.874 27 C 0.137 3.863 28 H 0.037 0.963 29 H 0.256 0.744 30 H 0.028 0.972 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.041 0.959 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.129 0.871 39 H 0.119 0.881 40 H 0.218 0.782 41 H 0.216 0.784 42 H 0.102 0.898 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.731 -16.695 0.318 19.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.191 4.191 3 Si 0.733 3.267 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.391 4.391 8 H 0.089 0.911 9 N -0.312 5.312 10 C 0.017 3.983 11 C -0.038 4.038 12 O -0.308 6.308 13 C 0.017 3.983 14 H 0.071 0.929 15 C -0.164 4.164 16 C -0.014 4.014 17 N -0.344 5.344 18 C 0.283 3.717 19 O -0.380 6.380 20 C -0.015 4.015 21 N -0.160 5.160 22 C -0.045 4.045 23 N -0.273 5.273 24 C -0.113 4.113 25 N -0.111 5.111 26 C 0.005 3.995 27 C 0.029 3.971 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.046 0.954 31 H 0.113 0.887 32 H 0.100 0.900 33 H 0.059 0.941 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.147 0.853 39 H 0.137 0.863 40 H 0.235 0.765 41 H 0.232 0.768 42 H 0.121 0.879 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.957 -16.001 -0.283 18.339 hybrid contribution 0.516 1.124 0.354 1.286 sum 9.472 -14.877 0.071 17.637 Atomic orbital electron populations 1.70005 1.05302 1.25888 1.53171 1.25079 0.95328 0.98484 1.00183 0.86348 0.78960 0.83126 0.78244 1.20657 1.21468 1.20896 1.19070 0.92159 0.84046 1.43838 0.91131 1.44017 1.33283 1.00934 1.52975 1.21439 0.88888 0.97899 0.90057 1.23344 0.98973 0.85216 0.96313 1.87741 1.40359 1.33182 1.69519 1.22411 0.87098 0.94761 0.94080 0.92923 1.21846 0.96623 0.97408 1.00529 1.21760 0.98025 0.90334 0.91252 1.48268 1.65300 1.13051 1.07819 1.20307 0.79160 0.89656 0.82550 1.90827 1.52070 1.46129 1.48937 1.21682 1.04559 0.98053 0.77219 1.50031 1.10586 1.48859 1.06536 1.26037 0.91117 0.97121 0.90257 1.70515 1.20837 1.23716 1.12279 1.26026 0.88561 0.97837 0.98901 1.78261 1.17486 1.21020 0.94332 1.21788 0.95270 0.81105 1.01348 1.21303 0.94027 0.88780 0.93026 0.94541 0.93361 0.95375 0.88656 0.90004 0.94076 0.90016 0.90700 0.90636 0.89887 0.85327 0.86333 0.76545 0.76760 0.87942 0.90717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.68 11.16 55.49 0.62 -25.06 16 2 C 0.01 0.24 4.99 -17.43 -0.09 0.15 16 3 Si 0.90 21.44 29.58 -169.99 -5.03 16.41 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.26 -6.92 8.87 -15.06 -0.13 -7.05 16 8 H 0.07 1.81 6.27 -52.48 -0.33 1.48 16 9 N -0.59 -14.30 3.04 -164.35 -0.50 -14.80 16 10 C 0.14 3.34 5.42 -3.48 -0.02 3.32 16 11 C 0.04 0.75 6.95 37.26 0.26 1.01 16 12 O -0.39 -7.31 10.49 -35.23 -0.37 -7.67 16 13 C 0.08 1.29 2.47 -26.63 -0.07 1.22 16 14 H 0.05 0.90 8.13 -51.93 -0.42 0.47 16 15 C -0.13 -1.49 5.82 -26.65 -0.16 -1.64 16 16 C 0.11 1.02 6.32 -3.67 -0.02 0.99 16 17 N -0.61 -8.44 2.98 -172.68 -0.51 -8.95 16 18 C 0.50 7.21 7.73 -10.99 -0.08 7.13 16 19 O -0.51 -10.15 15.14 5.55 0.08 -10.06 16 20 C 0.11 1.00 5.37 -5.19 -0.03 0.97 16 21 N -0.37 -4.38 3.41 -63.81 -0.22 -4.60 16 22 C 0.25 2.49 12.63 -90.65 -1.14 1.34 16 23 N -0.55 -6.84 11.19 -15.83 -0.18 -7.02 16 24 C 0.19 2.46 13.03 -91.81 -1.20 1.26 16 25 N -0.28 -4.32 11.81 29.29 0.35 -3.97 16 26 C 0.13 2.34 4.49 -3.70 -0.02 2.32 16 27 C 0.14 2.79 3.03 -67.53 -0.20 2.59 16 28 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.26 7.10 8.31 -40.82 -0.34 6.77 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.10 2.43 6.23 -51.93 -0.32 2.11 16 32 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.04 0.76 8.14 -51.92 -0.42 0.34 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.43 5.91 -51.93 -0.31 0.12 16 38 H 0.13 0.52 7.90 -51.93 -0.41 0.11 16 39 H 0.12 0.82 7.66 -51.93 -0.40 0.42 16 40 H 0.22 0.97 8.06 -52.49 -0.42 0.54 16 41 H 0.22 2.03 8.06 -52.49 -0.42 1.61 16 42 H 0.10 2.29 6.80 -51.93 -0.35 1.94 16 43 H 0.07 1.38 7.37 -51.93 -0.38 0.99 16 LS Contribution 344.93 15.07 5.20 5.20 Total: -1.00 -36.92 344.93 -9.32 -46.25 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -5.87 Total: 0.68 kcal Atomic # 6 Polarization: 16.51 SS G_CDS: -2.90 Total: 13.61 kcal Atomic # 7 Polarization: -63.96 SS G_CDS: -0.44 Total: -64.40 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -0.29 Total: -17.74 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -36.92 -9.32 -46.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074399275.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.344 kcal (2) G-P(sol) polarization free energy of solvation -36.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds