Wall clock time and date at job start Fri Apr 10 2020 18:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 120.00039 * 2 1 4 4 H 1.48490 * 109.47388 * 240.00405 * 3 2 1 5 5 H 1.48500 * 109.46908 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46864 * 120.00217 * 3 2 1 7 7 C 1.38805 * 120.00359 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00914 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99800 * 359.97438 * 7 2 1 10 10 C 1.47432 * 125.64845 * 0.04552 * 9 7 2 11 11 C 1.55117 * 104.94161 * 203.96571 * 10 9 7 12 12 H 1.09002 * 110.93481 * 81.21619 * 11 10 9 13 13 O 1.42902 * 111.15987 * 205.12857 * 11 10 9 14 14 C 1.55157 * 101.48803 * 323.21826 * 11 10 9 15 15 H 1.08987 * 110.72283 * 276.83283 * 14 11 10 16 16 N 1.46499 * 110.71859 * 153.73235 * 14 11 10 17 17 C 1.34784 * 119.99893 * 157.44381 * 16 14 11 18 18 O 1.21597 * 119.99617 * 359.97438 * 17 16 14 19 19 C 1.47523 * 119.99748 * 179.72590 * 17 16 14 20 20 C 1.36597 * 125.76551 * 179.71055 * 19 17 16 21 21 N 1.34820 * 106.83893 * 179.89899 * 20 19 17 22 22 C 1.46491 * 126.59563 * 180.11273 * 21 20 19 23 23 C 1.53005 * 109.47382 * 125.27238 * 22 21 20 24 24 C 1.52995 * 117.50007 * 243.62094 * 23 22 21 25 25 C 1.52993 * 60.00180 * 252.50857 * 24 23 22 26 26 N 1.40213 * 106.80515 * 0.36280 * 21 20 19 27 27 N 1.28751 * 108.37079 * 359.76927 * 26 21 20 28 28 C 1.47020 * 125.65316 * 179.97438 * 9 7 2 29 29 H 0.96999 * 120.00065 * 359.97438 * 1 2 3 30 30 H 1.08998 * 110.36133 * 322.93045 * 10 9 7 31 31 H 1.08999 * 110.36557 * 85.25085 * 10 9 7 32 32 H 0.96695 * 114.00142 * 292.17015 * 13 11 10 33 33 H 0.97005 * 120.00261 * 337.44593 * 16 14 11 34 34 H 1.07999 * 126.58293 * 0.04465 * 20 19 17 35 35 H 1.09000 * 109.47129 * 245.27632 * 22 21 20 36 36 H 1.09001 * 109.47130 * 5.27388 * 22 21 20 37 37 H 1.09002 * 115.54388 * 29.33140 * 23 22 21 38 38 H 1.08999 * 117.50131 * 0.02562 * 24 23 22 39 39 H 1.09000 * 117.49307 * 145.01601 * 24 23 22 40 40 H 1.09000 * 117.50436 * 252.51143 * 25 24 23 41 41 H 1.08997 * 117.49992 * 107.48966 * 25 24 23 42 42 H 1.09006 * 109.88182 * 59.55623 * 28 9 7 43 43 H 1.09007 * 110.01227 * 298.46961 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6965 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1415 -2.5331 -0.0010 11 6 -0.4049 -3.9353 0.6080 12 1 -0.3585 -3.9021 1.6965 13 8 -1.6577 -4.4623 0.1666 14 6 0.7784 -4.7524 0.0254 15 1 0.5482 -5.1000 -0.9816 16 7 1.1083 -5.8814 0.8987 17 6 1.7584 -6.9516 0.4000 18 8 2.0706 -6.9802 -0.7749 19 6 2.0960 -8.0859 1.2808 20 6 2.7446 -9.2264 0.9007 21 7 2.8546 -9.9982 2.0006 22 6 3.4823 -11.3193 2.0813 23 6 4.5535 -11.3092 3.1737 24 6 6.0037 -11.5379 2.7432 25 6 5.2471 -12.6345 3.4953 26 7 2.2474 -9.2956 3.0512 27 7 1.8121 -8.1745 2.5914 28 6 1.9318 -3.7274 -0.0016 29 1 -0.4850 0.8400 0.0004 30 1 -0.5994 -1.7590 0.6147 31 1 -0.5271 -2.4865 -1.0194 32 1 -2.4268 -3.9840 0.5052 33 1 0.8589 -5.8588 1.8358 34 1 3.1029 -9.4633 -0.0902 35 1 2.7261 -12.0669 2.3208 36 1 3.9425 -11.5620 1.1234 37 1 4.3759 -10.6206 3.9998 38 1 6.1948 -11.6952 1.6817 39 1 6.7806 -10.9995 3.2860 40 1 5.5262 -12.8177 4.5330 41 1 4.9403 -13.5136 2.9287 42 1 2.5585 -3.8514 0.8816 43 1 2.5297 -3.8656 -0.9025 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077905070.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:04 Heat of formation + Delta-G solvation = 74.023611 kcal Electronic energy + Delta-G solvation = -26354.119210 eV Core-core repulsion = 22438.705751 eV Total energy + Delta-G solvation = -3915.413459 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.35856 -39.44296 -38.24867 -37.64631 -35.02749 -34.48847 -33.89729 -31.75849 -31.02987 -28.71090 -28.04641 -26.89693 -24.64527 -23.46533 -22.99132 -22.74083 -21.47556 -20.65668 -20.29758 -19.83501 -18.34556 -17.09496 -16.90000 -16.58011 -16.30673 -15.75239 -15.46451 -15.02514 -14.75126 -14.71279 -14.40450 -14.02347 -13.93159 -13.60382 -13.22980 -12.84743 -12.60832 -12.27132 -12.19763 -12.10972 -11.87655 -11.49092 -11.41600 -11.23774 -11.13493 -10.97757 -10.84183 -10.79491 -10.46593 -10.20384 -10.02830 -9.87781 -9.67767 -9.42910 -9.25177 -8.71673 -8.68392 -6.88580 -5.68852 -3.11208 0.96414 1.67173 1.73954 3.11348 3.29818 3.40739 3.41270 3.44980 3.46489 3.75001 4.09498 4.15070 4.31613 4.36967 4.43627 4.60863 4.65049 4.66713 4.78195 4.85455 5.05357 5.18590 5.30255 5.31830 5.45044 5.50659 5.54296 5.62976 5.69048 5.73929 5.90977 6.12285 6.14204 6.24489 6.51391 6.70523 6.95747 7.35752 7.55187 7.62925 7.75098 7.89344 8.15247 8.28978 8.38316 9.17172 9.77613 10.40305 11.35363 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.021273 B = 0.002410 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.929324 B =11616.073736 C =12372.716181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.011 4.011 3 Si 0.918 3.082 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.222 4.222 8 H 0.080 0.920 9 N -0.600 5.600 10 C 0.130 3.870 11 C 0.066 3.934 12 H 0.063 0.937 13 O -0.565 6.565 14 C 0.142 3.858 15 H 0.103 0.897 16 N -0.697 5.697 17 C 0.603 3.397 18 O -0.540 6.540 19 C -0.094 4.094 20 C 0.093 3.907 21 N -0.360 5.360 22 C 0.155 3.845 23 C -0.177 4.177 24 C -0.176 4.176 25 C -0.165 4.165 26 N -0.064 5.064 27 N -0.203 5.203 28 C 0.130 3.870 29 H 0.254 0.746 30 H 0.113 0.887 31 H 0.026 0.974 32 H 0.377 0.623 33 H 0.406 0.594 34 H 0.205 0.795 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.121 0.879 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.031 0.969 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.006 -25.196 5.830 26.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.207 4.207 3 Si 0.748 3.252 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.350 4.350 8 H 0.098 0.902 9 N -0.328 5.328 10 C 0.005 3.995 11 C 0.006 3.994 12 H 0.081 0.919 13 O -0.370 6.370 14 C 0.037 3.963 15 H 0.121 0.879 16 N -0.347 5.347 17 C 0.387 3.613 18 O -0.416 6.416 19 C -0.234 4.234 20 C -0.064 4.064 21 N -0.145 5.145 22 C 0.034 3.966 23 C -0.196 4.196 24 C -0.213 4.213 25 C -0.203 4.203 26 N -0.045 5.045 27 N -0.077 5.077 28 C 0.003 3.997 29 H 0.064 0.936 30 H 0.131 0.869 31 H 0.044 0.956 32 H 0.224 0.776 33 H 0.242 0.758 34 H 0.221 0.779 35 H 0.121 0.879 36 H 0.124 0.876 37 H 0.139 0.861 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.118 0.882 42 H 0.049 0.951 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 6.225 -25.453 6.150 26.915 hybrid contribution 0.377 1.066 -0.311 1.173 sum 6.602 -24.387 5.839 25.931 Atomic orbital electron populations 1.69725 1.04922 1.25056 1.57629 1.24799 0.95786 0.97809 1.02267 0.86096 0.78375 0.82747 0.77948 1.21127 1.21540 1.21111 1.19057 0.90583 0.82128 1.43199 0.90248 1.44277 1.01510 0.99765 1.87213 1.22583 0.85496 0.91890 0.99570 1.23676 0.82620 0.95939 0.97162 0.91878 1.86407 1.15547 1.58850 1.76182 1.22066 0.94281 0.84936 0.94986 0.87935 1.45780 1.57533 1.17372 1.13968 1.16739 0.77916 0.80786 0.85903 1.90811 1.54457 1.80561 1.15781 1.21554 1.11022 0.98881 0.91916 1.23375 0.98086 0.90806 0.94132 1.50434 1.40164 1.16260 1.07671 1.21582 0.95231 0.79273 1.00525 1.22544 0.93230 1.02514 1.01274 1.23149 0.94123 1.02646 1.01353 1.22991 1.03073 0.92041 1.02153 1.81955 1.13332 1.00181 1.09009 1.74651 1.13398 1.10957 1.08689 1.21632 0.93671 0.85294 0.99132 0.93556 0.86925 0.95645 0.77567 0.75842 0.77868 0.87913 0.87592 0.86108 0.88260 0.88246 0.88028 0.88211 0.95077 0.94730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.61 10.09 55.49 0.56 -26.05 16 2 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 3 Si 0.92 22.07 29.55 -169.99 -5.02 17.05 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.22 -6.21 10.27 -15.06 -0.15 -6.37 16 8 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 9 N -0.60 -15.59 3.40 -169.94 -0.58 -16.17 16 10 C 0.13 3.15 5.63 -2.41 -0.01 3.14 16 11 C 0.07 1.29 4.06 -24.47 -0.10 1.20 16 12 H 0.06 1.16 8.00 -51.93 -0.42 0.74 16 13 O -0.57 -10.03 13.48 -35.23 -0.47 -10.51 16 14 C 0.14 2.79 3.00 -66.10 -0.20 2.60 16 15 H 0.10 2.18 7.62 -51.94 -0.40 1.79 16 16 N -0.70 -11.84 5.11 -53.08 -0.27 -12.11 16 17 C 0.60 10.10 7.82 -12.47 -0.10 10.00 16 18 O -0.54 -10.32 16.55 5.28 0.09 -10.23 16 19 C -0.09 -1.32 6.99 -83.55 -0.58 -1.90 16 20 C 0.09 0.96 11.27 -16.83 -0.19 0.77 16 21 N -0.36 -3.36 3.69 -61.06 -0.23 -3.59 16 22 C 0.15 0.79 6.82 -4.04 -0.03 0.76 16 23 C -0.18 -0.98 5.94 -90.62 -0.54 -1.51 16 24 C -0.18 -0.80 10.18 -26.74 -0.27 -1.08 16 25 C -0.17 -0.62 10.25 -26.74 -0.27 -0.90 16 26 N -0.06 -0.82 13.48 60.35 0.81 0.00 16 27 N -0.20 -2.92 12.04 32.85 0.40 -2.52 16 28 C 0.13 2.90 7.00 -3.07 -0.02 2.87 16 29 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.11 2.97 5.87 -51.93 -0.31 2.66 16 31 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.38 5.11 9.12 45.56 0.42 5.53 16 33 H 0.41 6.31 8.22 -40.82 -0.34 5.97 16 34 H 0.20 1.47 8.06 -52.49 -0.42 1.04 16 35 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.11 0.26 7.82 -51.93 -0.41 -0.14 16 37 H 0.12 0.92 7.94 -51.93 -0.41 0.51 16 38 H 0.10 0.36 8.03 -51.93 -0.42 -0.06 16 39 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 42 H 0.03 0.69 8.03 -51.93 -0.42 0.27 16 43 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 367.13 15.07 5.53 5.53 Total: -1.00 -34.58 367.13 -6.94 -41.52 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -5.19 Total: 7.93 kcal Atomic # 6 Polarization: 11.73 SS G_CDS: -2.57 Total: 9.17 kcal Atomic # 7 Polarization: -61.15 SS G_CDS: 0.69 Total: -60.45 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -0.39 Total: -20.74 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.58 -6.94 -41.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077905070.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.543 kcal (2) G-P(sol) polarization free energy of solvation -34.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds