Wall clock time and date at job start Fri Apr 10 2020 18:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 120.00039 * 2 1 4 4 H 1.48490 * 109.47388 * 240.00405 * 3 2 1 5 5 H 1.48500 * 109.46908 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46864 * 120.00217 * 3 2 1 7 7 C 1.38805 * 120.00359 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00914 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99800 * 359.97438 * 7 2 1 10 10 C 1.47432 * 125.64845 * 0.04552 * 9 7 2 11 11 C 1.55117 * 104.94161 * 203.96571 * 10 9 7 12 12 H 1.09002 * 110.93481 * 81.21619 * 11 10 9 13 13 O 1.42902 * 111.15987 * 205.12857 * 11 10 9 14 14 C 1.55157 * 101.48803 * 323.21826 * 11 10 9 15 15 H 1.08987 * 110.72283 * 276.83283 * 14 11 10 16 16 N 1.46499 * 110.71859 * 153.73235 * 14 11 10 17 17 C 1.34784 * 119.99893 * 157.44381 * 16 14 11 18 18 O 1.21597 * 119.99617 * 359.97438 * 17 16 14 19 19 C 1.47523 * 119.99748 * 179.72590 * 17 16 14 20 20 C 1.36597 * 125.76551 * 179.71055 * 19 17 16 21 21 N 1.34820 * 106.83893 * 179.89899 * 20 19 17 22 22 C 1.46491 * 126.59563 * 180.11273 * 21 20 19 23 23 C 1.53005 * 109.47382 * 125.27238 * 22 21 20 24 24 C 1.52995 * 117.50007 * 243.62094 * 23 22 21 25 25 C 1.52993 * 60.00180 * 252.50857 * 24 23 22 26 26 N 1.40213 * 106.80515 * 0.36280 * 21 20 19 27 27 N 1.28751 * 108.37079 * 359.76927 * 26 21 20 28 28 C 1.47020 * 125.65316 * 179.97438 * 9 7 2 29 29 H 0.96999 * 120.00065 * 359.97438 * 1 2 3 30 30 H 1.08998 * 110.36133 * 322.93045 * 10 9 7 31 31 H 1.08999 * 110.36557 * 85.25085 * 10 9 7 32 32 H 0.96695 * 114.00142 * 292.17015 * 13 11 10 33 33 H 0.97005 * 120.00261 * 337.44593 * 16 14 11 34 34 H 1.07999 * 126.58293 * 0.04465 * 20 19 17 35 35 H 1.09000 * 109.47129 * 245.27632 * 22 21 20 36 36 H 1.09001 * 109.47130 * 5.27388 * 22 21 20 37 37 H 1.09002 * 115.54388 * 29.33140 * 23 22 21 38 38 H 1.08999 * 117.50131 * 0.02562 * 24 23 22 39 39 H 1.09000 * 117.49307 * 145.01601 * 24 23 22 40 40 H 1.09000 * 117.50436 * 252.51143 * 25 24 23 41 41 H 1.08997 * 117.49992 * 107.48966 * 25 24 23 42 42 H 1.09006 * 109.88182 * 59.55623 * 28 9 7 43 43 H 1.09007 * 110.01227 * 298.46961 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6965 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1415 -2.5331 -0.0010 11 6 -0.4049 -3.9353 0.6080 12 1 -0.3585 -3.9021 1.6965 13 8 -1.6577 -4.4623 0.1666 14 6 0.7784 -4.7524 0.0254 15 1 0.5482 -5.1000 -0.9816 16 7 1.1083 -5.8814 0.8987 17 6 1.7584 -6.9516 0.4000 18 8 2.0706 -6.9802 -0.7749 19 6 2.0960 -8.0859 1.2808 20 6 2.7446 -9.2264 0.9007 21 7 2.8546 -9.9982 2.0006 22 6 3.4823 -11.3193 2.0813 23 6 4.5535 -11.3092 3.1737 24 6 6.0037 -11.5379 2.7432 25 6 5.2471 -12.6345 3.4953 26 7 2.2474 -9.2956 3.0512 27 7 1.8121 -8.1745 2.5914 28 6 1.9318 -3.7274 -0.0016 29 1 -0.4850 0.8400 0.0004 30 1 -0.5994 -1.7590 0.6147 31 1 -0.5271 -2.4865 -1.0194 32 1 -2.4268 -3.9840 0.5052 33 1 0.8589 -5.8588 1.8358 34 1 3.1029 -9.4633 -0.0902 35 1 2.7261 -12.0669 2.3208 36 1 3.9425 -11.5620 1.1234 37 1 4.3759 -10.6206 3.9998 38 1 6.1948 -11.6952 1.6817 39 1 6.7806 -10.9995 3.2860 40 1 5.5262 -12.8177 4.5330 41 1 4.9403 -13.5136 2.9287 42 1 2.5585 -3.8514 0.8816 43 1 2.5297 -3.8656 -0.9025 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077905070.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:03 Heat of formation + Delta-G solvation = 46.555690 kcal Electronic energy + Delta-G solvation = -26355.310308 eV Core-core repulsion = 22438.705751 eV Total energy + Delta-G solvation = -3916.604558 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.26205 -40.88035 -39.28899 -38.61629 -36.68518 -35.67409 -35.06367 -33.61972 -32.07763 -30.26674 -29.11676 -28.48380 -26.47612 -24.65996 -23.58685 -23.25751 -22.52555 -22.17311 -21.69595 -21.07274 -19.40481 -18.90913 -18.38864 -17.49371 -17.33230 -17.16126 -16.69204 -16.18048 -15.96086 -15.71723 -15.46471 -15.32144 -15.11950 -14.85513 -14.64344 -14.38002 -14.00656 -13.71244 -13.34908 -13.20541 -13.12838 -12.85568 -12.81758 -12.68954 -12.42272 -12.26326 -12.09985 -11.91612 -11.64056 -11.44674 -11.41731 -11.30015 -10.97270 -10.91765 -10.75418 -10.44511 -10.13591 -8.96540 -7.80772 -5.27213 0.13169 0.58155 1.05496 1.48042 1.51433 1.57705 1.99118 2.19187 2.48084 2.78744 3.06873 3.14424 3.23878 3.30970 3.61966 3.69816 3.82362 3.88716 3.92439 3.96310 4.04183 4.06463 4.14931 4.18863 4.42476 4.44879 4.53208 4.59452 4.75954 4.78932 4.84624 4.93388 4.99785 5.13557 5.23080 5.38261 5.39600 5.44808 5.45857 5.68488 6.21842 6.36441 6.86647 6.87548 7.05229 7.08406 7.69528 8.32121 9.20963 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.021273 B = 0.002410 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.929324 B =11616.073736 C =12372.716181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.063 4.063 3 Si 0.985 3.015 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.275 1.275 7 C -0.244 4.244 8 H 0.081 0.919 9 N -0.619 5.619 10 C 0.136 3.864 11 C 0.089 3.911 12 H 0.082 0.918 13 O -0.566 6.566 14 C 0.157 3.843 15 H 0.087 0.913 16 N -0.693 5.693 17 C 0.605 3.395 18 O -0.567 6.567 19 C -0.123 4.123 20 C 0.115 3.885 21 N -0.344 5.344 22 C 0.146 3.854 23 C -0.191 4.191 24 C -0.179 4.179 25 C -0.151 4.151 26 N -0.083 5.083 27 N -0.225 5.225 28 C 0.132 3.868 29 H 0.251 0.749 30 H 0.091 0.909 31 H -0.005 1.005 32 H 0.397 0.603 33 H 0.414 0.586 34 H 0.239 0.761 35 H 0.121 0.879 36 H 0.142 0.858 37 H 0.093 0.907 38 H 0.114 0.886 39 H 0.089 0.911 40 H 0.100 0.900 41 H 0.120 0.880 42 H 0.036 0.964 43 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.959 -27.420 6.048 28.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.255 4.255 3 Si 0.812 3.188 4 H -0.206 1.206 5 H -0.216 1.216 6 H -0.201 1.201 7 C -0.373 4.373 8 H 0.099 0.901 9 N -0.347 5.347 10 C 0.010 3.990 11 C 0.029 3.971 12 H 0.100 0.900 13 O -0.374 6.374 14 C 0.051 3.949 15 H 0.105 0.895 16 N -0.343 5.343 17 C 0.391 3.609 18 O -0.446 6.446 19 C -0.263 4.263 20 C -0.043 4.043 21 N -0.129 5.129 22 C 0.028 3.972 23 C -0.210 4.210 24 C -0.216 4.216 25 C -0.188 4.188 26 N -0.063 5.063 27 N -0.099 5.099 28 C 0.005 3.995 29 H 0.060 0.940 30 H 0.109 0.891 31 H 0.013 0.987 32 H 0.248 0.752 33 H 0.251 0.749 34 H 0.255 0.745 35 H 0.139 0.861 36 H 0.160 0.840 37 H 0.112 0.888 38 H 0.133 0.867 39 H 0.108 0.892 40 H 0.118 0.882 41 H 0.138 0.862 42 H 0.054 0.946 43 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 7.175 -27.730 6.417 29.353 hybrid contribution 0.128 1.631 -0.377 1.679 sum 7.304 -26.099 6.040 27.767 Atomic orbital electron populations 1.69951 1.06108 1.25473 1.58052 1.25653 0.96764 1.00978 1.02131 0.85065 0.77134 0.78396 0.78176 1.20632 1.21612 1.20105 1.19408 0.91071 0.83338 1.43459 0.90080 1.44533 1.02415 1.00570 1.87162 1.22390 0.84610 0.94321 0.97722 1.23285 0.83430 0.92816 0.97604 0.90039 1.86378 1.15659 1.58844 1.76491 1.21630 0.93282 0.85122 0.94859 0.89516 1.45623 1.57898 1.16818 1.13979 1.17053 0.76892 0.81059 0.85884 1.90789 1.55509 1.81202 1.17069 1.21293 1.13713 0.99387 0.91885 1.23839 0.95832 0.89296 0.95354 1.50724 1.38634 1.16989 1.06518 1.22092 0.95556 0.77319 1.02267 1.22437 0.94063 1.03514 1.01012 1.23238 0.93196 1.02887 1.02283 1.23087 1.01454 0.91916 1.02385 1.81879 1.14039 1.00156 1.10241 1.74623 1.14291 1.11968 1.09004 1.21674 0.94570 0.84634 0.98627 0.93951 0.89129 0.98659 0.75244 0.74872 0.74494 0.86145 0.84031 0.88824 0.86728 0.89213 0.88182 0.86153 0.94555 0.95907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.56 10.09 21.65 0.22 -55.34 16 2 C -0.06 -3.54 5.49 84.86 0.47 -3.07 16 3 Si 0.98 45.62 29.55 68.60 2.03 47.65 16 4 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 5 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 6 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.24 -13.92 10.27 84.03 0.86 -13.06 16 8 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 9 N -0.62 -32.91 3.40 -691.55 -2.35 -35.26 16 10 C 0.14 6.72 5.63 86.93 0.49 7.21 16 11 C 0.09 3.46 4.06 32.06 0.13 3.59 16 12 H 0.08 2.90 8.00 -2.39 -0.02 2.88 16 13 O -0.57 -19.58 13.48 -148.98 -2.01 -21.58 16 14 C 0.16 6.20 3.00 46.18 0.14 6.34 16 15 H 0.09 3.74 7.62 -2.39 -0.02 3.72 16 16 N -0.69 -23.28 5.11 -440.09 -2.25 -25.54 16 17 C 0.61 19.96 7.82 86.69 0.68 20.64 16 18 O -0.57 -21.46 16.55 -4.02 -0.07 -21.53 16 19 C -0.12 -3.30 6.99 40.82 0.29 -3.01 16 20 C 0.11 2.09 11.27 83.85 0.95 3.04 16 21 N -0.34 -5.61 3.69 -347.10 -1.28 -6.89 16 22 C 0.15 1.00 6.82 86.38 0.59 1.59 16 23 C -0.19 -1.74 5.94 -10.79 -0.06 -1.80 16 24 C -0.18 -1.24 10.18 30.59 0.31 -0.93 16 25 C -0.15 -0.76 10.25 30.59 0.31 -0.44 16 26 N -0.08 -2.01 13.48 37.02 0.50 -1.51 16 27 N -0.23 -6.32 12.04 -50.00 -0.60 -6.93 16 28 C 0.13 5.97 7.00 86.73 0.61 6.58 16 29 H 0.25 14.25 8.31 -92.71 -0.77 13.47 16 30 H 0.09 4.92 5.87 -2.39 -0.01 4.90 16 31 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 32 H 0.40 10.24 9.12 -74.06 -0.68 9.57 16 33 H 0.41 12.61 8.22 -92.70 -0.76 11.85 16 34 H 0.24 2.52 8.06 -2.91 -0.02 2.49 16 35 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.14 0.01 7.82 -2.39 -0.02 -0.01 16 37 H 0.09 1.39 7.94 -2.39 -0.02 1.38 16 38 H 0.11 0.44 8.03 -2.39 -0.02 0.42 16 39 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.12 0.13 8.14 -2.39 -0.02 0.11 16 42 H 0.04 1.61 8.03 -2.38 -0.02 1.59 16 43 H 0.02 1.08 8.14 -2.38 -0.02 1.07 16 Total: -1.00 -76.66 367.13 -0.44 -77.09 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: -0.38 Total: 23.16 kcal Atomic # 6 Polarization: 20.92 SS G_CDS: 5.75 Total: 26.67 kcal Atomic # 7 Polarization: -125.70 SS G_CDS: -5.76 Total: -131.46 kcal Atomic # 8 Polarization: -41.04 SS G_CDS: -2.07 Total: -43.11 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -76.66 -0.44 -77.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077905070.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.649 kcal (2) G-P(sol) polarization free energy of solvation -76.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds