Wall clock time and date at job start Fri Apr 10 2020 18:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99926 * 2 1 4 4 H 1.48504 * 109.47113 * 180.02562 * 3 2 1 5 5 H 1.48491 * 109.47484 * 300.00748 * 3 2 1 6 6 H 1.48498 * 109.46924 * 60.01088 * 3 2 1 7 7 C 1.38813 * 120.00083 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00081 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99649 * 359.97438 * 7 2 1 10 10 C 1.47020 * 125.65380 * 359.97438 * 9 7 2 11 11 C 1.54325 * 107.27413 * 178.98615 * 10 9 7 12 12 H 1.09000 * 110.71644 * 96.17081 * 11 10 9 13 13 O 1.42897 * 110.72135 * 219.44351 * 11 10 9 14 14 C 1.55161 * 102.94334 * 337.81161 * 11 10 9 15 15 H 1.09005 * 111.00066 * 277.38933 * 14 11 10 16 16 N 1.46495 * 111.00232 * 153.57562 * 14 11 10 17 17 C 1.34778 * 119.99829 * 155.00382 * 16 14 11 18 18 O 1.21288 * 120.00023 * 359.97438 * 17 16 14 19 19 C 1.50697 * 120.00236 * 179.97438 * 17 16 14 20 20 H 1.09000 * 109.45330 * 299.95466 * 19 17 16 21 21 C 1.53135 * 109.45564 * 179.97438 * 19 17 16 22 22 C 1.53463 * 109.30910 * 170.53753 * 21 19 17 23 23 C 1.50798 * 108.17291 * 48.68530 * 22 21 19 24 24 N 1.29778 * 128.57937 * 164.06050 * 23 22 21 25 25 N 1.28903 * 109.50424 * 180.14698 * 24 23 22 26 26 C 1.30837 * 109.74156 * 0.02562 * 25 24 23 27 27 N 1.34693 * 107.06998 * 359.96268 * 26 25 24 28 28 C 1.46257 * 128.85103 * 180.13990 * 27 26 25 29 29 C 1.47431 * 125.64540 * 180.02562 * 9 7 2 30 30 H 0.96994 * 119.99898 * 359.97438 * 1 2 3 31 31 H 1.09007 * 109.87884 * 59.56938 * 10 9 7 32 32 H 1.08999 * 110.01103 * 298.48441 * 10 9 7 33 33 H 0.96695 * 114.00523 * 293.52659 * 13 11 10 34 34 H 0.96997 * 120.00080 * 334.99327 * 16 14 11 35 35 H 1.08996 * 109.49955 * 50.58727 * 21 19 17 36 36 H 1.08998 * 109.52845 * 290.50684 * 21 19 17 37 37 H 1.09002 * 109.73142 * 168.36904 * 22 21 19 38 38 H 1.08998 * 109.72928 * 289.00135 * 22 21 19 39 39 H 1.07999 * 126.46687 * 179.97438 * 26 25 24 40 40 H 1.09003 * 109.59056 * 43.09847 * 28 27 26 41 41 H 1.08995 * 109.72414 * 282.71969 * 28 27 26 42 42 H 1.08993 * 110.37037 * 85.24061 * 29 9 7 43 43 H 1.09007 * 110.36599 * 322.91782 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2123 6 1 1.8916 2.3963 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1375 -2.5328 0.0005 11 6 -0.4485 -4.0441 -0.0260 12 1 -0.6310 -4.4180 0.9815 13 8 -1.5635 -4.3161 -0.8773 14 6 0.8515 -4.6562 -0.6115 15 1 0.8554 -4.5970 -1.6999 16 7 1.0289 -6.0395 -0.1629 17 6 1.7587 -6.8990 -0.9013 18 8 2.2682 -6.5273 -1.9373 19 6 1.9418 -8.3218 -0.4397 20 1 2.4337 -8.3274 0.5330 21 6 2.8047 -9.0796 -1.4526 22 6 3.1863 -10.4476 -0.8711 23 6 1.9347 -11.0973 -0.3369 24 7 1.7393 -12.3413 -0.0230 25 7 0.5294 -12.4949 0.3943 26 6 -0.0983 -11.3474 0.3622 27 7 0.7746 -10.4321 -0.1011 28 6 0.5717 -9.0008 -0.3230 29 6 1.9334 -3.7311 -0.0005 30 1 -0.4850 0.8400 0.0004 31 1 -0.5582 -2.0522 -0.8828 32 1 -0.5561 -2.0838 0.9013 33 1 -2.4009 -3.9548 -0.5562 34 1 0.6213 -6.3368 0.6655 35 1 3.7090 -8.5076 -1.6602 36 1 2.2434 -9.2206 -2.3762 37 1 3.6200 -11.0716 -1.6526 38 1 3.9062 -10.3162 -0.0633 39 1 -1.1229 -11.1679 0.6524 40 1 0.0236 -8.5748 0.5173 41 1 0.0075 -8.8476 -1.2429 42 1 2.1671 -4.0418 1.0177 43 1 2.8326 -3.7406 -0.6167 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078223742.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:07 Heat of formation + Delta-G solvation = 24.934833 kcal Electronic energy + Delta-G solvation = -27222.235626 eV Core-core repulsion = 23304.693518 eV Total energy + Delta-G solvation = -3917.542108 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.59365 -40.31291 -38.28790 -36.95659 -35.22208 -34.39739 -33.89934 -32.06603 -31.28651 -29.55415 -28.44412 -27.17797 -25.47931 -24.57919 -23.53794 -22.58461 -21.20456 -20.66526 -20.37837 -19.75725 -17.87789 -17.45962 -17.14899 -16.81854 -16.49396 -15.85779 -15.83509 -15.03867 -14.87939 -14.63296 -14.50271 -14.23824 -14.22266 -13.89978 -13.37084 -12.83067 -12.77916 -12.51503 -12.31791 -12.18988 -11.89750 -11.70778 -11.62688 -11.44195 -11.37879 -10.99047 -10.90349 -10.64899 -10.48584 -10.24054 -10.07813 -10.02848 -9.95826 -9.47263 -9.46546 -9.06417 -8.74575 -7.02467 -5.85987 -3.21010 1.51990 2.02685 2.44197 2.60632 2.94005 3.32552 3.38754 3.40846 3.72060 3.95507 4.04398 4.09706 4.33358 4.37476 4.48125 4.57646 4.61720 4.74040 4.84076 5.02039 5.05214 5.16400 5.31797 5.33795 5.43903 5.51705 5.56233 5.60118 5.67009 5.72188 5.85882 5.91046 5.96227 6.29996 6.45331 6.50560 6.68409 7.19950 7.34467 7.39604 7.63764 7.96693 8.04579 8.09431 8.44274 9.05198 9.65238 10.27029 11.25840 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.028923 B = 0.002608 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.847557 B =10734.822215 C =11352.148521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.007 4.007 3 Si 0.916 3.084 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.230 4.230 8 H 0.082 0.918 9 N -0.600 5.600 10 C 0.153 3.847 11 C 0.069 3.931 12 H 0.057 0.943 13 O -0.564 6.564 14 C 0.136 3.864 15 H 0.107 0.893 16 N -0.712 5.712 17 C 0.522 3.478 18 O -0.523 6.523 19 C -0.123 4.123 20 H 0.112 0.888 21 C -0.108 4.108 22 C -0.035 4.035 23 C 0.179 3.821 24 N -0.294 5.294 25 N -0.303 5.303 26 C 0.155 3.845 27 N -0.472 5.472 28 C 0.114 3.886 29 C 0.130 3.870 30 H 0.253 0.747 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.377 0.623 34 H 0.396 0.604 35 H 0.100 0.900 36 H 0.079 0.921 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.220 0.780 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.024 0.976 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.058 -17.578 1.857 17.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.203 4.203 3 Si 0.746 3.254 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.358 4.358 8 H 0.100 0.900 9 N -0.327 5.327 10 C 0.027 3.973 11 C 0.008 3.992 12 H 0.075 0.925 13 O -0.369 6.369 14 C 0.031 3.969 15 H 0.125 0.875 16 N -0.362 5.362 17 C 0.306 3.694 18 O -0.398 6.398 19 C -0.145 4.145 20 H 0.130 0.870 21 C -0.146 4.146 22 C -0.074 4.074 23 C -0.088 4.088 24 N -0.133 5.133 25 N -0.142 5.142 26 C -0.132 4.132 27 N -0.164 5.164 28 C -0.009 4.009 29 C 0.003 3.997 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.225 0.775 34 H 0.230 0.770 35 H 0.118 0.882 36 H 0.098 0.902 37 H 0.124 0.876 38 H 0.116 0.884 39 H 0.236 0.764 40 H 0.121 0.879 41 H 0.118 0.882 42 H 0.041 0.959 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.050 -18.835 0.962 18.860 hybrid contribution -0.783 2.531 0.769 2.759 sum -0.833 -16.304 1.732 16.417 Atomic orbital electron populations 1.69920 1.04964 1.25227 1.56969 1.24826 0.95798 0.97863 1.01823 0.85987 0.78777 0.83353 0.77303 1.20376 1.21594 1.21660 1.19128 0.90588 0.81994 1.44106 0.90041 1.44245 1.01174 0.99875 1.87448 1.21829 0.85439 0.87724 1.02291 1.23456 0.85494 0.98662 0.91551 0.92502 1.86453 1.18811 1.79991 1.51619 1.22340 0.94682 0.78653 1.01198 0.87464 1.45977 1.52678 1.11736 1.25846 1.19986 0.78957 0.86227 0.84276 1.90768 1.47368 1.78235 1.23455 1.21715 0.96248 0.93329 1.03168 0.87025 1.21571 1.01549 0.93912 0.97567 1.20301 0.90404 0.95106 1.01624 1.24907 0.90680 0.89900 1.03346 1.74051 1.09770 1.13610 1.15879 1.74497 1.00206 1.21003 1.18449 1.26307 0.99021 0.85474 1.02437 1.46171 1.11387 1.10297 1.48500 1.21963 0.97942 0.76347 1.04680 1.21837 0.94812 0.85799 0.97270 0.93621 0.92042 0.93254 0.77539 0.76966 0.88157 0.90199 0.87642 0.88383 0.76375 0.87862 0.88196 0.95886 0.93114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.89 10.31 55.49 0.57 -25.32 16 2 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 3 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.23 -6.18 10.28 -15.06 -0.15 -6.34 16 8 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 9 N -0.60 -14.49 3.39 -170.07 -0.58 -15.07 16 10 C 0.15 3.39 5.15 -3.06 -0.02 3.38 16 11 C 0.07 1.12 3.98 -24.89 -0.10 1.02 16 12 H 0.06 0.79 8.00 -51.93 -0.42 0.38 16 13 O -0.56 -8.61 13.39 -35.23 -0.47 -9.08 16 14 C 0.14 2.24 3.15 -65.78 -0.21 2.04 16 15 H 0.11 2.09 7.54 -51.93 -0.39 1.70 16 16 N -0.71 -8.21 5.10 -51.73 -0.26 -8.47 16 17 C 0.52 6.01 7.14 -10.99 -0.08 5.94 16 18 O -0.52 -8.36 15.47 5.55 0.09 -8.27 16 19 C -0.12 -0.91 2.54 -91.52 -0.23 -1.15 16 20 H 0.11 0.68 8.12 -51.93 -0.42 0.26 16 21 C -0.11 -0.82 4.68 -26.42 -0.12 -0.94 16 22 C -0.03 -0.25 6.33 -27.60 -0.17 -0.42 16 23 C 0.18 1.80 7.75 -155.29 -1.20 0.60 16 24 N -0.29 -3.86 12.20 32.76 0.40 -3.46 16 25 N -0.30 -3.86 12.23 29.58 0.36 -3.49 16 26 C 0.16 1.36 12.83 -90.41 -1.16 0.21 16 27 N -0.47 -3.93 3.11 -115.50 -0.36 -4.29 16 28 C 0.11 0.71 6.14 -3.99 -0.02 0.68 16 29 C 0.13 2.54 6.93 -2.53 -0.02 2.52 16 30 H 0.25 6.90 8.31 -40.82 -0.34 6.57 16 31 H 0.06 1.56 7.30 -51.93 -0.38 1.19 16 32 H 0.05 1.19 7.50 -51.93 -0.39 0.80 16 33 H 0.38 4.29 9.12 45.56 0.42 4.70 16 34 H 0.40 3.28 8.20 -40.82 -0.33 2.94 16 35 H 0.10 0.81 7.79 -51.93 -0.40 0.40 16 36 H 0.08 0.68 8.12 -51.93 -0.42 0.26 16 37 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.22 0.96 8.06 -52.49 -0.42 0.54 16 40 H 0.10 0.40 7.86 -51.93 -0.41 -0.01 16 41 H 0.10 0.64 8.12 -51.93 -0.42 0.22 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.05 1.04 8.14 -51.92 -0.42 0.61 16 LS Contribution 352.90 15.07 5.32 5.32 Total: -1.00 -35.83 352.90 -8.78 -44.61 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -5.23 Total: 3.86 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: -3.59 Total: 7.25 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: 0.13 Total: -60.10 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -0.39 Total: -17.35 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.83 -8.78 -44.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078223742.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.545 kcal (2) G-P(sol) polarization free energy of solvation -35.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds