Wall clock time and date at job start Fri Apr 10 2020 18:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99926 * 2 1 4 4 H 1.48504 * 109.47113 * 180.02562 * 3 2 1 5 5 H 1.48491 * 109.47484 * 300.00748 * 3 2 1 6 6 H 1.48498 * 109.46924 * 60.01088 * 3 2 1 7 7 C 1.38813 * 120.00083 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00081 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99649 * 359.97438 * 7 2 1 10 10 C 1.47020 * 125.65380 * 359.97438 * 9 7 2 11 11 C 1.54325 * 107.27413 * 178.98615 * 10 9 7 12 12 H 1.09000 * 110.71644 * 96.17081 * 11 10 9 13 13 O 1.42897 * 110.72135 * 219.44351 * 11 10 9 14 14 C 1.55161 * 102.94334 * 337.81161 * 11 10 9 15 15 H 1.09005 * 111.00066 * 277.38933 * 14 11 10 16 16 N 1.46495 * 111.00232 * 153.57562 * 14 11 10 17 17 C 1.34778 * 119.99829 * 155.00382 * 16 14 11 18 18 O 1.21288 * 120.00023 * 359.97438 * 17 16 14 19 19 C 1.50697 * 120.00236 * 179.97438 * 17 16 14 20 20 H 1.09000 * 109.45330 * 299.95466 * 19 17 16 21 21 C 1.53135 * 109.45564 * 179.97438 * 19 17 16 22 22 C 1.53463 * 109.30910 * 170.53753 * 21 19 17 23 23 C 1.50798 * 108.17291 * 48.68530 * 22 21 19 24 24 N 1.29778 * 128.57937 * 164.06050 * 23 22 21 25 25 N 1.28903 * 109.50424 * 180.14698 * 24 23 22 26 26 C 1.30837 * 109.74156 * 0.02562 * 25 24 23 27 27 N 1.34693 * 107.06998 * 359.96268 * 26 25 24 28 28 C 1.46257 * 128.85103 * 180.13990 * 27 26 25 29 29 C 1.47431 * 125.64540 * 180.02562 * 9 7 2 30 30 H 0.96994 * 119.99898 * 359.97438 * 1 2 3 31 31 H 1.09007 * 109.87884 * 59.56938 * 10 9 7 32 32 H 1.08999 * 110.01103 * 298.48441 * 10 9 7 33 33 H 0.96695 * 114.00523 * 293.52659 * 13 11 10 34 34 H 0.96997 * 120.00080 * 334.99327 * 16 14 11 35 35 H 1.08996 * 109.49955 * 50.58727 * 21 19 17 36 36 H 1.08998 * 109.52845 * 290.50684 * 21 19 17 37 37 H 1.09002 * 109.73142 * 168.36904 * 22 21 19 38 38 H 1.08998 * 109.72928 * 289.00135 * 22 21 19 39 39 H 1.07999 * 126.46687 * 179.97438 * 26 25 24 40 40 H 1.09003 * 109.59056 * 43.09847 * 28 27 26 41 41 H 1.08995 * 109.72414 * 282.71969 * 28 27 26 42 42 H 1.08993 * 110.37037 * 85.24061 * 29 9 7 43 43 H 1.09007 * 110.36599 * 322.91782 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2123 6 1 1.8916 2.3963 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1375 -2.5328 0.0005 11 6 -0.4485 -4.0441 -0.0260 12 1 -0.6310 -4.4180 0.9815 13 8 -1.5635 -4.3161 -0.8773 14 6 0.8515 -4.6562 -0.6115 15 1 0.8554 -4.5970 -1.6999 16 7 1.0289 -6.0395 -0.1629 17 6 1.7587 -6.8990 -0.9013 18 8 2.2682 -6.5273 -1.9373 19 6 1.9418 -8.3218 -0.4397 20 1 2.4337 -8.3274 0.5330 21 6 2.8047 -9.0796 -1.4526 22 6 3.1863 -10.4476 -0.8711 23 6 1.9347 -11.0973 -0.3369 24 7 1.7393 -12.3413 -0.0230 25 7 0.5294 -12.4949 0.3943 26 6 -0.0983 -11.3474 0.3622 27 7 0.7746 -10.4321 -0.1011 28 6 0.5717 -9.0008 -0.3230 29 6 1.9334 -3.7311 -0.0005 30 1 -0.4850 0.8400 0.0004 31 1 -0.5582 -2.0522 -0.8828 32 1 -0.5561 -2.0838 0.9013 33 1 -2.4009 -3.9548 -0.5562 34 1 0.6213 -6.3368 0.6655 35 1 3.7090 -8.5076 -1.6602 36 1 2.2434 -9.2206 -2.3762 37 1 3.6200 -11.0716 -1.6526 38 1 3.9062 -10.3162 -0.0633 39 1 -1.1229 -11.1679 0.6524 40 1 0.0236 -8.5748 0.5173 41 1 0.0075 -8.8476 -1.2429 42 1 2.1671 -4.0418 1.0177 43 1 2.8326 -3.7406 -0.6167 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078223742.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:06 Heat of formation + Delta-G solvation = -2.404829 kcal Electronic energy + Delta-G solvation = -27223.421163 eV Core-core repulsion = 23304.693518 eV Total energy + Delta-G solvation = -3918.727645 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.28832 -41.32825 -39.62407 -37.76384 -36.66033 -35.66564 -34.59366 -33.70301 -32.20939 -30.44024 -29.89519 -28.68960 -26.56473 -25.86123 -24.36154 -23.27643 -22.48978 -22.03670 -21.68342 -20.48177 -19.13960 -18.51354 -18.34276 -17.87938 -17.32935 -17.23757 -16.62140 -16.46946 -15.87608 -15.62113 -15.54840 -15.21284 -15.18631 -14.76238 -14.72845 -14.45853 -14.15726 -13.76028 -13.37336 -13.16432 -13.05776 -13.02533 -12.78239 -12.73866 -12.61118 -12.27448 -12.06087 -12.04406 -11.89993 -11.53004 -11.36393 -11.16870 -11.10814 -10.83042 -10.77926 -10.20529 -10.19700 -8.96911 -7.90030 -5.26611 0.88065 1.33820 1.45331 1.46724 1.56401 1.61213 1.86126 1.97069 2.46707 3.11504 3.13347 3.29738 3.32636 3.40223 3.52961 3.56313 3.84059 3.89206 4.00324 4.07387 4.07865 4.17273 4.24521 4.28709 4.46180 4.48758 4.57155 4.60262 4.77330 4.83605 4.95815 4.98986 5.00982 5.11370 5.22511 5.37192 5.42326 5.45538 5.67589 5.92330 6.13625 6.47381 6.87650 7.04598 7.17389 7.69577 7.71824 8.30625 9.19633 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.028923 B = 0.002608 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.847557 B =10734.822215 C =11352.148521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.062 4.062 3 Si 0.977 3.023 4 H -0.267 1.267 5 H -0.294 1.294 6 H -0.288 1.288 7 C -0.244 4.244 8 H 0.082 0.918 9 N -0.623 5.623 10 C 0.158 3.842 11 C 0.093 3.907 12 H 0.098 0.902 13 O -0.568 6.568 14 C 0.154 3.846 15 H 0.074 0.926 16 N -0.696 5.696 17 C 0.526 3.474 18 O -0.570 6.570 19 C -0.109 4.109 20 H 0.137 0.863 21 C -0.104 4.104 22 C -0.028 4.028 23 C 0.177 3.823 24 N -0.339 5.339 25 N -0.353 5.353 26 C 0.171 3.829 27 N -0.470 5.470 28 C 0.115 3.885 29 C 0.129 3.871 30 H 0.249 0.751 31 H 0.018 0.982 32 H 0.024 0.976 33 H 0.396 0.604 34 H 0.419 0.581 35 H 0.095 0.905 36 H 0.067 0.933 37 H 0.111 0.889 38 H 0.115 0.885 39 H 0.261 0.739 40 H 0.139 0.861 41 H 0.100 0.900 42 H 0.046 0.954 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.380 -18.595 3.248 18.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.255 4.255 3 Si 0.806 3.194 4 H -0.192 1.192 5 H -0.221 1.221 6 H -0.215 1.215 7 C -0.373 4.373 8 H 0.099 0.901 9 N -0.351 5.351 10 C 0.032 3.968 11 C 0.032 3.968 12 H 0.116 0.884 13 O -0.376 6.376 14 C 0.047 3.953 15 H 0.092 0.908 16 N -0.348 5.348 17 C 0.312 3.688 18 O -0.448 6.448 19 C -0.131 4.131 20 H 0.155 0.845 21 C -0.142 4.142 22 C -0.067 4.067 23 C -0.092 4.092 24 N -0.177 5.177 25 N -0.191 5.191 26 C -0.118 4.118 27 N -0.160 5.160 28 C -0.007 4.007 29 C 0.003 3.997 30 H 0.058 0.942 31 H 0.036 0.964 32 H 0.043 0.957 33 H 0.246 0.754 34 H 0.257 0.743 35 H 0.113 0.887 36 H 0.086 0.914 37 H 0.129 0.871 38 H 0.133 0.867 39 H 0.276 0.724 40 H 0.157 0.843 41 H 0.119 0.881 42 H 0.063 0.937 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -0.384 -19.909 2.387 20.055 hybrid contribution -0.684 2.847 0.288 2.942 sum -1.068 -17.062 2.675 17.303 Atomic orbital electron populations 1.70122 1.06107 1.25404 1.58020 1.25618 0.96703 1.00906 1.02288 0.85025 0.78187 0.79430 0.76777 1.19179 1.22086 1.21514 1.19462 0.91005 0.83503 1.43342 0.90060 1.44522 1.02327 1.00920 1.87331 1.21648 0.84287 0.91821 0.99017 1.23140 0.85831 0.94165 0.93647 0.88409 1.86423 1.19483 1.79699 1.51998 1.21721 0.93668 0.80843 0.99087 0.90785 1.45689 1.52843 1.09533 1.26772 1.20614 0.77469 0.87469 0.83242 1.90767 1.49096 1.79324 1.25633 1.21625 0.97423 0.90088 1.03936 0.84518 1.21506 1.01289 0.94146 0.97288 1.20360 0.89697 0.94386 1.02254 1.25307 0.91877 0.89498 1.02561 1.73952 1.10593 1.15486 1.17711 1.74399 1.00695 1.23336 1.20660 1.27058 1.00111 0.84397 1.00221 1.46260 1.10783 1.10931 1.48058 1.22129 0.97163 0.75091 1.06360 1.21972 0.95034 0.84533 0.98203 0.94206 0.96400 0.95736 0.75370 0.74342 0.88664 0.91383 0.87108 0.86675 0.72380 0.84341 0.88142 0.93651 0.94747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.56 10.31 21.65 0.22 -54.33 16 2 C -0.06 -3.41 5.49 84.86 0.47 -2.95 16 3 Si 0.98 44.58 29.55 68.60 2.03 46.61 16 4 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 5 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 6 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 7 C -0.24 -13.31 10.28 84.03 0.86 -12.45 16 8 H 0.08 4.29 7.83 -2.91 -0.02 4.26 16 9 N -0.62 -30.42 3.39 -691.97 -2.35 -32.77 16 10 C 0.16 7.09 5.15 86.73 0.45 7.54 16 11 C 0.09 2.82 3.98 31.78 0.13 2.95 16 12 H 0.10 2.27 8.00 -2.39 -0.02 2.26 16 13 O -0.57 -16.07 13.39 -148.98 -1.99 -18.07 16 14 C 0.15 4.82 3.15 46.38 0.15 4.96 16 15 H 0.07 2.88 7.54 -2.38 -0.02 2.87 16 16 N -0.70 -13.72 5.10 -435.96 -2.22 -15.94 16 17 C 0.53 10.79 7.14 87.66 0.63 11.41 16 18 O -0.57 -17.76 15.47 -3.05 -0.05 -17.81 16 19 C -0.11 -1.25 2.54 -11.38 -0.03 -1.28 16 20 H 0.14 1.00 8.12 -2.39 -0.02 0.98 16 21 C -0.10 -1.37 4.68 30.79 0.14 -1.23 16 22 C -0.03 -0.33 6.33 30.03 0.19 -0.14 16 23 C 0.18 3.20 7.75 138.13 1.07 4.27 16 24 N -0.34 -8.63 12.20 -50.27 -0.61 -9.24 16 25 N -0.35 -8.57 12.23 -60.31 -0.74 -9.31 16 26 C 0.17 2.50 12.83 180.27 2.31 4.81 16 27 N -0.47 -6.31 3.11 -519.32 -1.62 -7.92 16 28 C 0.11 0.94 6.14 86.54 0.53 1.47 16 29 C 0.13 4.92 6.93 86.85 0.60 5.52 16 30 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 31 H 0.02 0.94 7.30 -2.38 -0.02 0.92 16 32 H 0.02 1.20 7.50 -2.39 -0.02 1.18 16 33 H 0.40 8.04 9.12 -74.06 -0.68 7.36 16 34 H 0.42 4.73 8.20 -92.71 -0.76 3.97 16 35 H 0.09 1.40 7.79 -2.39 -0.02 1.38 16 36 H 0.07 1.07 8.12 -2.39 -0.02 1.05 16 37 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.26 1.16 8.06 -2.91 -0.02 1.13 16 40 H 0.14 0.23 7.86 -2.39 -0.02 0.21 16 41 H 0.10 0.91 8.12 -2.39 -0.02 0.89 16 42 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 Total: -1.00 -82.86 352.90 -0.22 -83.08 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -0.38 Total: 10.81 kcal Atomic # 6 Polarization: 17.41 SS G_CDS: 7.50 Total: 24.90 kcal Atomic # 7 Polarization: -122.21 SS G_CDS: -7.32 Total: -129.52 kcal Atomic # 8 Polarization: -33.83 SS G_CDS: -2.04 Total: -35.88 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -82.86 -0.22 -83.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078223742.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.673 kcal (2) G-P(sol) polarization free energy of solvation -82.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds