Wall clock time and date at job start Fri Apr 10 2020 18:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 120.00121 * 2 1 4 4 H 1.48499 * 109.47195 * 240.00175 * 3 2 1 5 5 H 1.48509 * 109.47217 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47354 * 119.99722 * 3 2 1 7 7 C 1.38815 * 120.00127 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99767 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99685 * 359.97438 * 7 2 1 10 10 C 1.46493 * 119.99854 * 179.97438 * 9 7 2 11 11 H 1.09002 * 112.95318 * 336.41142 * 10 9 7 12 12 C 1.53957 * 113.66200 * 107.81212 * 10 9 7 13 13 C 1.53955 * 87.29400 * 139.20574 * 12 10 9 14 14 H 1.09004 * 113.66140 * 220.79807 * 13 12 10 15 15 N 1.46497 * 113.66234 * 89.74137 * 13 12 10 16 16 C 1.34775 * 119.99930 * 107.81356 * 15 13 12 17 17 O 1.21280 * 120.00001 * 359.97438 * 16 15 13 18 18 C 1.50709 * 120.00084 * 180.02562 * 16 15 13 19 19 N 1.46496 * 109.47098 * 180.02562 * 18 16 15 20 20 C 1.36600 * 127.11656 * 264.67736 * 19 18 16 21 21 N 1.30338 * 107.27826 * 179.89375 * 20 19 18 22 22 N 1.28533 * 109.99647 * 0.38654 * 21 20 19 23 23 C 1.31031 * 109.85710 * 359.75492 * 22 21 20 24 24 O 1.35531 * 126.44846 * 180.02562 * 23 22 21 25 25 C 1.52904 * 113.66364 * 205.00089 * 10 9 7 26 26 C 1.52910 * 121.13510 * 94.91400 * 25 10 9 27 27 C 1.53957 * 86.78122 * 209.38051 * 26 25 10 28 28 C 1.52909 * 121.13701 * 346.34984 * 25 10 9 29 29 H 0.97007 * 119.99662 * 359.97438 * 1 2 3 30 30 H 0.97002 * 120.00134 * 359.97438 * 9 7 2 31 31 H 1.08997 * 113.57722 * 24.60816 * 12 10 9 32 32 H 1.08998 * 113.57865 * 253.81095 * 12 10 9 33 33 H 0.96996 * 120.00299 * 287.81415 * 15 13 12 34 34 H 1.08998 * 109.46385 * 299.99927 * 18 16 15 35 35 H 1.09001 * 109.46849 * 59.99522 * 18 16 15 36 36 H 1.08001 * 126.36060 * 0.04917 * 20 19 18 37 37 H 0.96701 * 114.00080 * 269.99981 * 24 23 22 38 38 H 1.09003 * 113.66688 * 94.91189 * 26 25 10 39 39 H 1.08997 * 113.66384 * 323.85427 * 26 25 10 40 40 H 1.08998 * 113.57948 * 139.33169 * 27 26 25 41 41 H 1.09000 * 113.57875 * 270.12813 * 27 26 25 42 42 H 1.08993 * 113.65927 * 36.14497 * 28 25 10 43 43 H 1.08999 * 113.66533 * 265.08675 * 28 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7466 0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0016 10 6 2.0580 -3.6567 0.0016 11 1 3.0669 -3.5651 -0.4009 12 6 1.9944 -4.4069 1.3445 13 6 1.8254 -5.7021 0.5297 14 1 1.0945 -6.3921 0.9515 15 7 3.0933 -6.3516 0.1881 16 6 3.4516 -7.4958 0.8036 17 8 2.7245 -7.9875 1.6406 18 6 4.7563 -8.1637 0.4527 19 7 4.9123 -9.3810 1.2526 20 6 5.5900 -9.5115 2.4314 21 7 5.4792 -10.7549 2.8061 22 7 4.7891 -11.4137 1.9448 23 6 4.4165 -10.6193 0.9716 24 8 3.6767 -10.9638 -0.1105 25 6 1.2652 -4.8231 -0.5892 26 6 1.4183 -5.2197 -2.0580 27 6 -0.0400 -5.7082 -1.9881 28 6 -0.2409 -4.7139 -0.8299 29 1 -0.4850 0.8401 0.0004 30 1 0.3555 -2.3880 0.0023 31 1 1.1211 -4.1525 1.9451 32 1 2.9248 -4.3664 1.9110 33 1 3.6750 -5.9582 -0.4810 34 1 4.7586 -8.4223 -0.6061 35 1 5.5810 -7.4825 0.6622 36 1 6.1174 -8.7290 2.9568 37 1 4.2009 -11.2596 -0.8673 38 1 2.1402 -6.0197 -2.2222 39 1 1.5641 -4.3718 -2.7272 40 1 -0.6238 -5.4666 -2.8763 41 1 -0.1364 -6.7518 -1.6885 42 1 -0.5614 -3.7239 -1.1539 43 1 -0.8443 -5.1099 -0.0132 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078602069.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:15 Heat of formation + Delta-G solvation = 78.640859 kcal Electronic energy + Delta-G solvation = -27169.978591 eV Core-core repulsion = 23254.765350 eV Total energy + Delta-G solvation = -3915.213240 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.31926 -40.84463 -39.24716 -37.99718 -35.34688 -35.03138 -34.26641 -32.51534 -30.18293 -30.06372 -28.64542 -25.60296 -24.85107 -24.19711 -23.12186 -22.72449 -22.25836 -21.15676 -20.28575 -19.30851 -18.44967 -17.69364 -17.30783 -17.07259 -16.27069 -16.04267 -15.61419 -15.46374 -15.27435 -14.94264 -14.66476 -14.29771 -13.91273 -13.54893 -13.13629 -12.80082 -12.75303 -12.57921 -12.19825 -11.96917 -11.94964 -11.75605 -11.50245 -11.17726 -11.00530 -10.92499 -10.76675 -10.55967 -10.31715 -10.25171 -10.04847 -9.97402 -9.76828 -9.48954 -9.47464 -8.98226 -8.91207 -7.06265 -5.88107 -3.17226 1.25943 1.65478 2.20432 2.50689 2.84475 3.35547 3.36547 3.40538 3.41853 4.02377 4.19819 4.31085 4.37331 4.48853 4.61090 4.84242 4.91402 4.92321 5.08346 5.12584 5.28121 5.32958 5.53476 5.54333 5.68658 5.80488 5.89020 5.91711 5.98649 6.07538 6.11297 6.12216 6.23158 6.29448 6.33439 6.48493 6.66828 6.80165 6.90410 6.96243 7.25848 7.58265 7.89287 8.30387 8.35684 9.41937 9.98982 10.33392 11.33965 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.020789 B = 0.002799 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.517338 B =10001.610654 C =10842.113499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.010 4.010 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.248 4.248 8 H 0.070 0.930 9 N -0.707 5.707 10 C 0.182 3.818 11 H 0.075 0.925 12 C -0.174 4.174 13 C 0.142 3.858 14 H 0.097 0.903 15 N -0.696 5.696 16 C 0.497 3.503 17 O -0.520 6.520 18 C 0.088 3.912 19 N -0.472 5.472 20 C 0.176 3.824 21 N -0.281 5.281 22 N -0.286 5.286 23 C 0.362 3.638 24 O -0.433 6.433 25 C -0.126 4.126 26 C -0.122 4.122 27 C -0.141 4.141 28 C -0.105 4.105 29 H 0.257 0.743 30 H 0.387 0.613 31 H 0.087 0.913 32 H 0.058 0.942 33 H 0.403 0.597 34 H 0.125 0.875 35 H 0.133 0.867 36 H 0.226 0.774 37 H 0.404 0.596 38 H 0.057 0.943 39 H 0.086 0.914 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.098 0.902 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.563 -16.261 -5.050 20.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.738 3.262 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.379 4.379 8 H 0.088 0.912 9 N -0.346 5.346 10 C 0.069 3.931 11 H 0.092 0.908 12 C -0.217 4.217 13 C 0.037 3.963 14 H 0.115 0.885 15 N -0.347 5.347 16 C 0.280 3.720 17 O -0.395 6.395 18 C -0.039 4.039 19 N -0.176 5.176 20 C -0.111 4.111 21 N -0.122 5.122 22 N -0.137 5.137 23 C 0.058 3.942 24 O -0.232 6.232 25 C -0.128 4.128 26 C -0.159 4.159 27 C -0.178 4.178 28 C -0.143 4.143 29 H 0.067 0.933 30 H 0.223 0.777 31 H 0.105 0.895 32 H 0.077 0.923 33 H 0.237 0.763 34 H 0.142 0.858 35 H 0.151 0.849 36 H 0.242 0.758 37 H 0.261 0.739 38 H 0.076 0.924 39 H 0.105 0.895 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.117 0.883 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.711 -17.570 -3.412 20.363 hybrid contribution 0.531 2.389 -1.467 2.853 sum 10.242 -15.182 -4.879 18.952 Atomic orbital electron populations 1.69640 1.05138 1.25997 1.57030 1.24758 0.95505 0.97775 1.02584 0.86281 0.78578 0.83525 0.77838 1.21245 1.21647 1.21219 1.19220 0.90975 0.84193 1.43503 0.91227 1.42357 1.05902 0.99573 1.86719 1.21374 0.94624 0.85086 0.92045 0.90756 1.24320 1.02024 0.95013 1.00316 1.21580 0.84540 0.93550 0.96635 0.88528 1.45497 1.22643 1.24187 1.42324 1.20460 0.87673 0.81421 0.82461 1.90820 1.52845 1.63702 1.32136 1.21728 0.98895 0.85856 0.97424 1.46453 1.40609 1.09466 1.21038 1.26409 0.99302 0.98824 0.86598 1.74225 1.14894 1.02494 1.20547 1.74616 1.13518 1.24593 1.00963 1.22100 0.96792 0.82009 0.93332 1.84990 1.31056 1.85058 1.22086 1.23455 0.98081 0.97744 0.93546 1.22629 0.96514 1.00360 0.96407 1.22832 0.97110 0.98819 0.99048 1.22470 0.93585 1.00427 0.97795 0.93299 0.77744 0.89458 0.92289 0.76272 0.85754 0.84898 0.75778 0.73918 0.92438 0.89531 0.91797 0.90984 0.88325 0.91825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.86 13.06 55.49 0.72 -26.13 16 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 3 Si 0.91 21.38 29.55 -169.99 -5.02 16.35 16 4 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.25 -6.43 9.97 -15.06 -0.15 -6.58 16 8 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 9 N -0.71 -16.24 5.30 -52.99 -0.28 -16.52 16 10 C 0.18 3.16 4.27 -67.48 -0.29 2.87 16 11 H 0.07 1.24 8.10 -51.93 -0.42 0.82 16 12 C -0.17 -2.82 7.68 -25.74 -0.20 -3.02 16 13 C 0.14 1.94 4.12 -67.48 -0.28 1.66 16 14 H 0.10 1.50 7.47 -51.93 -0.39 1.11 16 15 N -0.70 -6.97 4.80 -53.36 -0.26 -7.23 16 16 C 0.50 5.28 7.90 -10.98 -0.09 5.19 16 17 O -0.52 -8.38 16.03 5.56 0.09 -8.29 16 18 C 0.09 0.51 6.69 -5.19 -0.03 0.47 16 19 N -0.47 -4.30 2.29 -121.04 -0.28 -4.58 16 20 C 0.18 1.66 12.80 -89.07 -1.14 0.52 16 21 N -0.28 -3.72 12.18 29.87 0.36 -3.36 16 22 N -0.29 -4.05 12.22 29.65 0.36 -3.69 16 23 C 0.36 4.12 9.22 -88.76 -0.82 3.31 16 24 O -0.43 -3.89 13.62 -18.29 -0.25 -4.14 16 25 C -0.13 -1.80 0.92 -154.71 -0.14 -1.94 16 26 C -0.12 -1.51 7.62 -26.28 -0.20 -1.71 16 27 C -0.14 -1.76 8.08 -25.74 -0.21 -1.97 16 28 C -0.10 -1.57 7.15 -26.28 -0.19 -1.76 16 29 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 30 H 0.39 9.51 6.23 -40.82 -0.25 9.25 16 31 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.40 2.93 8.42 -40.82 -0.34 2.58 16 34 H 0.12 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.13 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.23 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.40 1.08 9.06 45.56 0.41 1.49 16 38 H 0.06 0.59 7.58 -51.93 -0.39 0.19 16 39 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.10 1.71 7.03 -51.93 -0.36 1.35 16 43 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 365.52 15.07 5.51 5.51 Total: -1.00 -37.27 365.52 -7.97 -45.24 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -5.10 Total: 10.17 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -3.83 Total: -3.32 kcal Atomic # 7 Polarization: -62.14 SS G_CDS: 0.64 Total: -61.51 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: -0.16 Total: -12.44 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -37.27 -7.97 -45.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078602069.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.878 kcal (2) G-P(sol) polarization free energy of solvation -37.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds