Wall clock time and date at job start Fri Apr 10 2020 18:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48503 * 109.47294 * 269.99778 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99638 * 3 2 1 6 6 H 1.48496 * 109.47166 * 149.99470 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 H 1.09002 * 112.88911 * 25.05559 * 10 9 7 12 12 C 1.53952 * 113.65985 * 253.70920 * 10 9 7 13 13 C 1.54147 * 87.22650 * 220.82548 * 12 10 9 14 14 H 1.08992 * 113.66355 * 270.17198 * 13 12 10 15 15 N 1.46499 * 113.72039 * 139.14642 * 13 12 10 16 16 C 1.34783 * 119.99638 * 107.74687 * 15 13 12 17 17 O 1.21283 * 119.99832 * 0.02562 * 16 15 13 18 18 C 1.50693 * 119.99966 * 180.02562 * 16 15 13 19 19 N 1.46498 * 109.47366 * 180.02562 * 18 16 15 20 20 C 1.36599 * 127.12170 * 265.03186 * 19 18 16 21 21 N 1.30333 * 107.28123 * 179.97438 * 20 19 18 22 22 N 1.28526 * 109.99545 * 359.97438 * 21 20 19 23 23 C 1.31030 * 109.85995 * 359.72079 * 22 21 20 24 24 O 1.35541 * 126.45128 * 180.30018 * 23 22 21 25 25 C 1.52909 * 113.66261 * 156.40134 * 10 9 7 26 26 C 1.52914 * 121.13623 * 13.65051 * 25 10 9 27 27 C 1.53952 * 86.78154 * 209.37981 * 26 25 10 28 28 C 1.52905 * 121.13816 * 265.08992 * 25 10 9 29 29 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 31 31 H 1.08996 * 113.58203 * 335.39952 * 12 10 9 32 32 H 1.09000 * 113.58047 * 106.19424 * 12 10 9 33 33 H 0.96999 * 120.00718 * 287.75381 * 15 13 12 34 34 H 1.09006 * 109.47674 * 300.00252 * 18 16 15 35 35 H 1.09003 * 109.47130 * 60.00344 * 18 16 15 36 36 H 1.07998 * 126.35944 * 0.02562 * 20 19 18 37 37 H 0.96700 * 113.99742 * 270.16648 * 24 23 22 38 38 H 1.08995 * 113.66107 * 323.84906 * 26 25 10 39 39 H 1.09001 * 113.65891 * 94.90690 * 26 25 10 40 40 H 1.09000 * 113.57991 * 270.13018 * 27 26 25 41 41 H 1.09000 * 113.58227 * 139.33624 * 27 26 25 42 42 H 1.09010 * 113.66152 * 265.08803 * 28 25 10 43 43 H 1.08999 * 113.66770 * 36.14030 * 28 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 1 3.0558 -3.5680 0.4369 12 6 2.0305 -4.3932 -1.3445 13 6 1.8389 -5.6973 -0.5452 14 1 2.7748 -6.1841 -0.2714 15 7 0.8711 -6.6192 -1.1448 16 6 1.2977 -7.7514 -1.7388 17 8 2.4827 -8.0071 -1.7763 18 6 0.3024 -8.6996 -2.3561 19 7 1.0113 -9.8452 -2.9318 20 6 1.4121 -9.9998 -4.2285 21 7 2.0050 -11.1572 -4.3150 22 7 2.0052 -11.7378 -3.1683 23 6 1.4140 -10.9742 -2.2827 24 8 1.2335 -11.2555 -0.9692 25 6 1.2507 -4.8285 0.5673 26 6 -0.2609 -4.7214 0.7713 27 6 -0.0890 -5.7263 1.9250 28 6 1.3670 -5.2385 2.0358 29 1 -0.4850 0.8401 -0.0004 30 1 0.3555 -2.3880 0.0005 31 1 1.1736 -4.1326 -1.9656 32 1 2.9756 -4.3471 -1.8854 33 1 -0.0766 -6.4149 -1.1146 34 1 -0.3902 -9.0489 -1.5902 35 1 -0.2526 -8.1841 -3.1400 36 1 1.2657 -9.2937 -5.0324 37 1 0.4080 -11.7208 -0.7764 38 1 -0.5896 -3.7344 1.0964 39 1 -0.8437 -5.1098 -0.0640 40 1 -0.1777 -6.7671 1.6135 41 1 -0.6948 -5.4928 2.8005 42 1 2.0848 -6.0401 2.2107 43 1 1.4959 -4.3968 2.7162 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078602071.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:20 Heat of formation + Delta-G solvation = 78.118623 kcal Electronic energy + Delta-G solvation = -27187.368732 eV Core-core repulsion = 23272.132846 eV Total energy + Delta-G solvation = -3915.235886 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.31201 -40.84412 -39.23757 -37.98928 -35.22945 -34.96599 -34.33761 -32.68961 -30.17655 -30.06213 -28.71026 -25.65947 -24.79906 -24.24390 -23.14240 -22.72016 -22.19251 -20.76680 -20.52219 -19.31440 -18.56642 -17.59059 -17.28474 -17.08850 -16.26435 -16.14076 -15.78509 -15.49205 -15.11000 -14.98154 -14.61993 -14.42863 -13.94170 -13.21601 -13.07840 -13.01290 -12.74288 -12.57961 -12.23594 -11.98842 -11.93931 -11.65971 -11.42927 -11.20114 -11.07207 -10.88940 -10.83600 -10.55395 -10.36307 -10.18459 -10.13307 -10.01276 -9.76427 -9.54150 -9.46805 -8.94885 -8.92009 -7.06218 -5.88591 -3.17116 1.27045 1.67025 2.22584 2.51429 2.91388 3.36928 3.37424 3.43223 3.43944 4.03329 4.21991 4.32644 4.38226 4.50401 4.59037 4.76142 4.87616 4.92373 5.00897 5.10150 5.28970 5.31865 5.50936 5.54477 5.67785 5.74604 5.85368 5.88590 5.99606 6.03180 6.10823 6.12527 6.19465 6.25350 6.34554 6.47019 6.62036 6.76132 6.92001 6.97060 7.29601 7.62048 7.90795 8.30414 8.36367 9.42299 9.97996 10.32937 11.33729 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.023719 B = 0.002701 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.218403 B =10364.939590 C =10979.419388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.011 4.011 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.706 5.706 10 C 0.182 3.818 11 H 0.080 0.920 12 C -0.174 4.174 13 C 0.145 3.855 14 H 0.112 0.888 15 N -0.704 5.704 16 C 0.494 3.506 17 O -0.522 6.522 18 C 0.087 3.913 19 N -0.472 5.472 20 C 0.176 3.824 21 N -0.281 5.281 22 N -0.287 5.287 23 C 0.362 3.638 24 O -0.433 6.433 25 C -0.125 4.125 26 C -0.107 4.107 27 C -0.140 4.140 28 C -0.122 4.122 29 H 0.256 0.744 30 H 0.386 0.614 31 H 0.081 0.919 32 H 0.061 0.939 33 H 0.401 0.599 34 H 0.124 0.876 35 H 0.132 0.868 36 H 0.226 0.774 37 H 0.403 0.597 38 H 0.099 0.901 39 H 0.056 0.944 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.278 -18.251 -2.020 19.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.069 3.931 11 H 0.098 0.902 12 C -0.216 4.216 13 C 0.040 3.960 14 H 0.130 0.870 15 N -0.355 5.355 16 C 0.277 3.723 17 O -0.397 6.397 18 C -0.040 4.040 19 N -0.175 5.175 20 C -0.111 4.111 21 N -0.122 5.122 22 N -0.137 5.137 23 C 0.058 3.942 24 O -0.232 6.232 25 C -0.127 4.127 26 C -0.145 4.145 27 C -0.177 4.177 28 C -0.160 4.160 29 H 0.066 0.934 30 H 0.221 0.779 31 H 0.099 0.901 32 H 0.080 0.920 33 H 0.237 0.763 34 H 0.142 0.858 35 H 0.150 0.850 36 H 0.242 0.758 37 H 0.260 0.740 38 H 0.117 0.883 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.065 -19.189 -2.373 19.758 hybrid contribution -1.546 2.102 0.612 2.680 sum -5.610 -17.087 -1.761 18.070 Atomic orbital electron populations 1.69647 1.05126 1.25830 1.57486 1.24743 0.95528 0.97770 1.02669 0.86189 0.78720 0.83700 0.77579 1.21666 1.21757 1.20688 1.19304 0.91151 0.84088 1.42974 0.91036 1.42308 1.05755 0.99495 1.86846 1.21128 0.95046 0.84817 0.92121 0.90207 1.24341 1.01812 0.94794 1.00681 1.22287 0.92269 0.87580 0.93843 0.87035 1.45950 1.11240 1.21126 1.57207 1.20497 0.89777 0.82391 0.79593 1.90813 1.16868 1.74495 1.57573 1.21754 0.94312 0.86327 1.01650 1.46468 1.44672 1.16268 1.10110 1.26400 1.00087 0.99082 0.85574 1.74220 1.17201 1.05600 1.15150 1.74609 1.19213 1.23981 0.95918 1.22106 0.99981 0.85599 0.86552 1.84997 1.45385 1.78370 1.14420 1.23484 0.97494 0.97794 0.93937 1.22455 0.94003 1.00611 0.97396 1.22837 0.97548 0.98367 0.98983 1.22684 0.96274 1.00650 0.96367 0.93431 0.77879 0.90090 0.92016 0.76304 0.85844 0.85007 0.75804 0.73954 0.88262 0.92570 0.91143 0.91763 0.92061 0.89435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.67 13.06 55.49 0.72 -25.94 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 3 Si 0.91 21.61 29.55 -169.99 -5.02 16.59 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.24 -6.41 9.97 -15.06 -0.15 -6.56 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.71 -16.16 5.32 -52.99 -0.28 -16.44 16 10 C 0.18 3.30 4.35 -67.48 -0.29 3.00 16 11 H 0.08 1.50 8.11 -51.93 -0.42 1.07 16 12 C -0.17 -2.79 7.70 -25.64 -0.20 -2.99 16 13 C 0.14 1.95 4.13 -67.38 -0.28 1.67 16 14 H 0.11 1.67 7.46 -51.93 -0.39 1.29 16 15 N -0.70 -7.12 5.28 -53.27 -0.28 -7.40 16 16 C 0.49 5.32 7.90 -10.99 -0.09 5.23 16 17 O -0.52 -8.41 16.03 5.55 0.09 -8.32 16 18 C 0.09 0.52 6.69 -5.20 -0.03 0.49 16 19 N -0.47 -4.37 2.29 -121.04 -0.28 -4.65 16 20 C 0.18 1.68 12.80 -89.07 -1.14 0.54 16 21 N -0.28 -3.75 12.18 29.87 0.36 -3.39 16 22 N -0.29 -4.08 12.22 29.65 0.36 -3.72 16 23 C 0.36 4.17 9.22 -88.76 -0.82 3.35 16 24 O -0.43 -3.94 13.62 -18.32 -0.25 -4.19 16 25 C -0.12 -1.76 1.07 -154.71 -0.16 -1.93 16 26 C -0.11 -1.39 6.78 -26.28 -0.18 -1.57 16 27 C -0.14 -1.58 8.08 -25.75 -0.21 -1.79 16 28 C -0.12 -1.62 7.84 -26.28 -0.21 -1.83 16 29 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.39 9.22 6.17 -40.82 -0.25 8.97 16 31 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.40 3.07 6.72 -40.82 -0.27 2.79 16 34 H 0.12 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.13 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.23 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.40 1.12 9.06 45.56 0.41 1.54 16 38 H 0.10 1.59 6.99 -51.93 -0.36 1.23 16 39 H 0.06 0.61 6.42 -51.93 -0.33 0.27 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 43 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 LS Contribution 363.16 15.07 5.47 5.47 Total: -1.00 -36.89 363.16 -7.92 -44.82 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -4.97 Total: 9.95 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -3.85 Total: -2.78 kcal Atomic # 7 Polarization: -62.15 SS G_CDS: 0.61 Total: -61.54 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: -0.16 Total: -12.51 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.89 -7.92 -44.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078602071.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.935 kcal (2) G-P(sol) polarization free energy of solvation -36.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds