Wall clock time and date at job start Fri Apr 10 2020 18:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48503 * 109.47294 * 269.99778 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99638 * 3 2 1 6 6 H 1.48496 * 109.47166 * 149.99470 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 H 1.09002 * 112.88911 * 25.05559 * 10 9 7 12 12 C 1.53952 * 113.65985 * 253.70920 * 10 9 7 13 13 C 1.54147 * 87.22650 * 220.82548 * 12 10 9 14 14 H 1.08992 * 113.66355 * 270.17198 * 13 12 10 15 15 N 1.46499 * 113.72039 * 139.14642 * 13 12 10 16 16 C 1.34783 * 119.99638 * 107.74687 * 15 13 12 17 17 O 1.21283 * 119.99832 * 0.02562 * 16 15 13 18 18 C 1.50693 * 119.99966 * 180.02562 * 16 15 13 19 19 N 1.46498 * 109.47366 * 180.02562 * 18 16 15 20 20 C 1.36599 * 127.12170 * 265.03186 * 19 18 16 21 21 N 1.30333 * 107.28123 * 179.97438 * 20 19 18 22 22 N 1.28526 * 109.99545 * 359.97438 * 21 20 19 23 23 C 1.31030 * 109.85995 * 359.72079 * 22 21 20 24 24 O 1.35541 * 126.45128 * 180.30018 * 23 22 21 25 25 C 1.52909 * 113.66261 * 156.40134 * 10 9 7 26 26 C 1.52914 * 121.13623 * 13.65051 * 25 10 9 27 27 C 1.53952 * 86.78154 * 209.37981 * 26 25 10 28 28 C 1.52905 * 121.13816 * 265.08992 * 25 10 9 29 29 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 31 31 H 1.08996 * 113.58203 * 335.39952 * 12 10 9 32 32 H 1.09000 * 113.58047 * 106.19424 * 12 10 9 33 33 H 0.96999 * 120.00718 * 287.75381 * 15 13 12 34 34 H 1.09006 * 109.47674 * 300.00252 * 18 16 15 35 35 H 1.09003 * 109.47130 * 60.00344 * 18 16 15 36 36 H 1.07998 * 126.35944 * 0.02562 * 20 19 18 37 37 H 0.96700 * 113.99742 * 270.16648 * 24 23 22 38 38 H 1.08995 * 113.66107 * 323.84906 * 26 25 10 39 39 H 1.09001 * 113.65891 * 94.90690 * 26 25 10 40 40 H 1.09000 * 113.57991 * 270.13018 * 27 26 25 41 41 H 1.09000 * 113.58227 * 139.33624 * 27 26 25 42 42 H 1.09010 * 113.66152 * 265.08803 * 28 25 10 43 43 H 1.08999 * 113.66770 * 36.14030 * 28 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 1 3.0558 -3.5680 0.4369 12 6 2.0305 -4.3932 -1.3445 13 6 1.8389 -5.6973 -0.5452 14 1 2.7748 -6.1841 -0.2714 15 7 0.8711 -6.6192 -1.1448 16 6 1.2977 -7.7514 -1.7388 17 8 2.4827 -8.0071 -1.7763 18 6 0.3024 -8.6996 -2.3561 19 7 1.0113 -9.8452 -2.9318 20 6 1.4121 -9.9998 -4.2285 21 7 2.0050 -11.1572 -4.3150 22 7 2.0052 -11.7378 -3.1683 23 6 1.4140 -10.9742 -2.2827 24 8 1.2335 -11.2555 -0.9692 25 6 1.2507 -4.8285 0.5673 26 6 -0.2609 -4.7214 0.7713 27 6 -0.0890 -5.7263 1.9250 28 6 1.3670 -5.2385 2.0358 29 1 -0.4850 0.8401 -0.0004 30 1 0.3555 -2.3880 0.0005 31 1 1.1736 -4.1326 -1.9656 32 1 2.9756 -4.3471 -1.8854 33 1 -0.0766 -6.4149 -1.1146 34 1 -0.3902 -9.0489 -1.5902 35 1 -0.2526 -8.1841 -3.1400 36 1 1.2657 -9.2937 -5.0324 37 1 0.4080 -11.7208 -0.7764 38 1 -0.5896 -3.7344 1.0964 39 1 -0.8437 -5.1098 -0.0640 40 1 -0.1777 -6.7671 1.6135 41 1 -0.6948 -5.4928 2.8005 42 1 2.0848 -6.0401 2.2107 43 1 1.4959 -4.3968 2.7162 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078602071.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:19 Heat of formation + Delta-G solvation = 48.739803 kcal Electronic energy + Delta-G solvation = -27188.642693 eV Core-core repulsion = 23272.132846 eV Total energy + Delta-G solvation = -3916.509847 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.05704 -41.97146 -40.21831 -38.65883 -36.40268 -35.89638 -35.62665 -34.17010 -31.83002 -30.90780 -29.48115 -26.80337 -26.39761 -25.39754 -24.34023 -23.49626 -23.19510 -21.76251 -21.67974 -20.03815 -19.54695 -19.28768 -18.27415 -17.99404 -17.26956 -16.99341 -16.74021 -16.40520 -16.24575 -16.16504 -15.89500 -15.45543 -15.03375 -14.87838 -14.33156 -13.91947 -13.74018 -13.39688 -13.31763 -13.17412 -13.12192 -12.85343 -12.82523 -12.75571 -12.37747 -12.28796 -12.09558 -11.95930 -11.83271 -11.40114 -11.29876 -11.21767 -11.05883 -10.74336 -10.64950 -10.26911 -10.00761 -8.94756 -7.95617 -5.21886 0.56983 1.05466 1.43574 1.47229 1.47696 1.55646 1.74346 2.10255 2.56053 2.77614 3.35430 3.41004 3.52471 3.59306 3.60533 3.74208 3.79719 3.93252 3.99287 4.10318 4.14977 4.24041 4.30786 4.53580 4.62997 4.64718 4.71078 4.76308 4.91931 4.95603 4.99371 5.06686 5.13658 5.14341 5.28623 5.43553 5.50445 5.56193 5.61122 5.71287 6.27706 6.42809 6.51012 7.12460 7.35379 7.58803 8.11465 8.36576 9.27152 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.023719 B = 0.002701 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.218403 B =10364.939590 C =10979.419388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.069 4.069 3 Si 0.965 3.035 4 H -0.289 1.289 5 H -0.295 1.295 6 H -0.274 1.274 7 C -0.243 4.243 8 H 0.070 0.930 9 N -0.716 5.716 10 C 0.159 3.841 11 H 0.065 0.935 12 C -0.167 4.167 13 C 0.168 3.832 14 H 0.098 0.902 15 N -0.691 5.691 16 C 0.495 3.505 17 O -0.580 6.580 18 C 0.091 3.909 19 N -0.470 5.470 20 C 0.187 3.813 21 N -0.328 5.328 22 N -0.337 5.337 23 C 0.363 3.637 24 O -0.442 6.442 25 C -0.114 4.114 26 C -0.107 4.107 27 C -0.120 4.120 28 C -0.128 4.128 29 H 0.251 0.749 30 H 0.380 0.620 31 H 0.079 0.921 32 H 0.051 0.949 33 H 0.418 0.582 34 H 0.164 0.836 35 H 0.179 0.821 36 H 0.266 0.734 37 H 0.429 0.571 38 H 0.066 0.934 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.981 -19.398 -2.214 21.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.262 4.262 3 Si 0.795 3.205 4 H -0.216 1.216 5 H -0.222 1.222 6 H -0.199 1.199 7 C -0.375 4.375 8 H 0.088 0.912 9 N -0.354 5.354 10 C 0.048 3.952 11 H 0.084 0.916 12 C -0.209 4.209 13 C 0.062 3.938 14 H 0.116 0.884 15 N -0.343 5.343 16 C 0.281 3.719 17 O -0.459 6.459 18 C -0.034 4.034 19 N -0.173 5.173 20 C -0.101 4.101 21 N -0.167 5.167 22 N -0.187 5.187 23 C 0.057 3.943 24 O -0.245 6.245 25 C -0.117 4.117 26 C -0.145 4.145 27 C -0.157 4.157 28 C -0.166 4.166 29 H 0.060 0.940 30 H 0.214 0.786 31 H 0.097 0.903 32 H 0.070 0.930 33 H 0.257 0.743 34 H 0.182 0.818 35 H 0.196 0.804 36 H 0.281 0.719 37 H 0.291 0.709 38 H 0.084 0.916 39 H 0.103 0.897 40 H 0.116 0.884 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.794 -20.392 -2.557 21.353 hybrid contribution -0.960 2.437 0.707 2.713 sum -6.754 -17.955 -1.850 19.272 Atomic orbital electron populations 1.69772 1.06241 1.25972 1.59479 1.25417 0.96334 1.00582 1.03838 0.85264 0.77756 0.80179 0.77312 1.21642 1.22184 1.19913 1.19625 0.91337 0.85535 1.40988 0.91222 1.42385 1.05549 1.00207 1.87281 1.21411 0.94934 0.84484 0.94353 0.91650 1.24147 1.01256 0.96145 0.99309 1.21708 0.92569 0.87084 0.92481 0.88382 1.45711 1.11402 1.20514 1.56667 1.21314 0.89828 0.82391 0.78372 1.90811 1.19751 1.75708 1.59644 1.22137 0.92736 0.84529 1.03981 1.46598 1.44576 1.16374 1.09761 1.27224 0.97841 0.98381 0.86615 1.74106 1.19449 1.07675 1.15513 1.74471 1.21235 1.26051 0.96977 1.22171 0.99229 0.86055 0.86894 1.84944 1.47528 1.78861 1.13129 1.23341 0.98067 0.95438 0.94814 1.22406 0.92976 0.99788 0.99299 1.22778 0.95393 0.99153 0.98365 1.22696 0.98479 1.00386 0.95032 0.94003 0.78587 0.90266 0.93035 0.74310 0.81813 0.80364 0.71865 0.70933 0.91563 0.89666 0.88350 0.91128 0.91178 0.91445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.06 13.06 21.65 0.28 -55.77 16 2 C -0.07 -3.81 5.50 84.86 0.47 -3.35 16 3 Si 0.97 44.99 29.55 68.60 2.03 47.02 16 4 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 5 H -0.30 -13.84 7.11 99.48 0.71 -13.14 16 6 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 7 C -0.24 -12.97 9.97 84.03 0.84 -12.13 16 8 H 0.07 3.65 7.83 -2.91 -0.02 3.63 16 9 N -0.72 -33.38 5.32 -321.55 -1.71 -35.09 16 10 C 0.16 5.83 4.35 45.28 0.20 6.02 16 11 H 0.07 2.54 8.11 -2.39 -0.02 2.52 16 12 C -0.17 -5.25 7.70 31.30 0.24 -5.01 16 13 C 0.17 4.22 4.13 45.35 0.19 4.41 16 14 H 0.10 2.85 7.46 -2.39 -0.02 2.83 16 15 N -0.69 -11.43 5.28 -440.83 -2.33 -13.75 16 16 C 0.50 8.87 7.90 87.65 0.69 9.56 16 17 O -0.58 -17.64 16.03 -3.04 -0.05 -17.69 16 18 C 0.09 0.62 6.69 85.63 0.57 1.19 16 19 N -0.47 -7.17 2.29 -647.65 -1.48 -8.65 16 20 C 0.19 3.12 12.80 179.81 2.30 5.42 16 21 N -0.33 -8.54 12.18 -59.40 -0.72 -9.27 16 22 N -0.34 -9.49 12.22 -173.67 -2.12 -11.62 16 23 C 0.36 7.68 9.22 179.70 1.66 9.34 16 24 O -0.44 -7.02 13.62 -88.46 -1.20 -8.22 16 25 C -0.11 -3.10 1.07 -52.31 -0.06 -3.15 16 26 C -0.11 -2.56 6.78 30.89 0.21 -2.35 16 27 C -0.12 -2.32 8.08 31.23 0.25 -2.07 16 28 C -0.13 -3.23 7.84 30.88 0.24 -2.99 16 29 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 30 H 0.38 18.50 6.17 -92.71 -0.57 17.92 16 31 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 32 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.42 4.27 6.72 -92.71 -0.62 3.65 16 34 H 0.16 -0.11 8.14 -2.38 -0.02 -0.13 16 35 H 0.18 -0.35 8.14 -2.39 -0.02 -0.37 16 36 H 0.27 1.68 8.06 -2.91 -0.02 1.65 16 37 H 0.43 1.16 9.06 -74.06 -0.67 0.49 16 38 H 0.07 2.10 6.99 -2.39 -0.02 2.08 16 39 H 0.08 1.51 6.42 -2.39 -0.02 1.50 16 40 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 43 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -85.43 363.16 -0.30 -85.73 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: -0.79 Total: 22.41 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: 7.80 Total: 4.90 kcal Atomic # 7 Polarization: -126.07 SS G_CDS: -8.08 Total: -134.15 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -1.25 Total: -25.91 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -85.43 -0.30 -85.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078602071.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.472 kcal (2) G-P(sol) polarization free energy of solvation -85.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds