Wall clock time and date at job start Fri Apr 10 2020 18:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86808 * 119.99966 * 2 1 4 4 H 1.48500 * 109.46888 * 274.98650 * 3 2 1 5 5 H 1.48503 * 109.47109 * 34.98261 * 3 2 1 6 6 H 1.48499 * 109.47213 * 154.98516 * 3 2 1 7 7 C 1.38803 * 120.00091 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00047 * 186.76358 * 7 2 1 9 9 N 1.36938 * 119.99934 * 6.75894 * 7 2 1 10 10 C 1.47487 * 125.68954 * 173.78022 * 9 7 2 11 11 C 1.55392 * 104.78582 * 155.59937 * 10 9 7 12 12 H 1.08994 * 113.09663 * 157.53891 * 11 10 9 13 13 O 1.42771 * 107.09721 * 281.69405 * 11 10 9 14 14 C 1.42651 * 115.69466 * 166.04548 * 13 11 10 15 15 C 1.53993 * 108.29197 * 295.41580 * 14 13 11 16 16 N 1.47049 * 107.12197 * 55.84048 * 15 14 13 17 17 C 1.34771 * 120.11331 * 130.15441 * 16 15 14 18 18 O 1.21283 * 119.99785 * 179.72205 * 17 16 15 19 19 C 1.50706 * 120.00440 * 359.72997 * 17 16 15 20 20 C 1.53001 * 109.47105 * 179.97438 * 19 17 16 21 21 N 1.46504 * 109.46726 * 179.97438 * 20 19 17 22 22 C 1.35312 * 125.86849 * 124.99983 * 21 20 19 23 23 C 1.35349 * 106.17548 * 180.02562 * 22 21 20 24 24 N 1.33769 * 106.49869 * 0.02562 * 23 22 21 25 25 N 1.28634 * 108.88277 * 359.97438 * 24 23 22 26 26 C 1.45661 * 119.76437 * 309.88285 * 16 15 14 27 27 H 1.09003 * 109.95316 * 165.76388 * 26 16 15 28 28 C 1.47212 * 125.68932 * 353.78703 * 9 7 2 29 29 H 0.97005 * 119.99965 * 0.02562 * 1 2 3 30 30 H 1.09001 * 110.37367 * 36.77810 * 10 9 7 31 31 H 1.08999 * 110.37764 * 274.43142 * 10 9 7 32 32 H 1.09000 * 109.67464 * 55.26866 * 14 13 11 33 33 H 1.08998 * 109.68296 * 175.81962 * 14 13 11 34 34 H 1.08996 * 110.04335 * 296.41963 * 15 14 13 35 35 H 1.08993 * 109.93784 * 175.20397 * 15 14 13 36 36 H 1.08993 * 109.47124 * 59.99475 * 19 17 16 37 37 H 1.09001 * 109.46499 * 299.99269 * 19 17 16 38 38 H 1.09000 * 109.46875 * 59.99837 * 20 19 17 39 39 H 1.08990 * 109.47261 * 299.99373 * 20 19 17 40 40 H 1.08003 * 126.90670 * 359.97321 * 22 21 20 41 41 H 1.08001 * 126.75155 * 179.97438 * 23 22 21 42 42 H 1.08997 * 109.95875 * 61.88953 * 28 9 7 43 43 H 1.09000 * 109.95879 * 300.64906 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3923 2.1073 -1.3948 5 1 1.5042 2.6201 0.8027 6 1 3.5965 1.4122 0.5920 7 6 2.0102 -1.2021 0.0005 8 1 3.0846 -1.2053 0.1107 9 7 1.3327 -2.3839 -0.1385 10 6 1.9479 -3.7164 -0.2844 11 6 0.8649 -4.7105 0.2193 12 1 0.9960 -5.7195 -0.1714 13 8 0.8944 -4.6757 1.6462 14 6 -0.2203 -5.2769 2.3027 15 6 -1.4820 -4.4663 1.9529 16 7 -1.5805 -4.4300 0.4862 17 6 -2.7391 -4.7528 -0.1219 18 8 -2.8195 -4.7173 -1.3315 19 6 -3.9349 -5.1576 0.7011 20 6 -5.1108 -5.4692 -0.2268 21 7 -6.2731 -5.8633 0.5733 22 6 -7.4998 -5.2943 0.5234 23 6 -8.2619 -5.9621 1.4207 24 7 -7.4745 -6.8943 1.9688 25 7 -6.3026 -6.8097 1.4452 26 6 -0.4231 -4.0384 -0.3068 27 1 -0.5815 -4.3035 -1.3522 28 6 -0.1313 -2.5364 -0.1674 29 1 -0.4850 0.8401 -0.0004 30 1 2.8452 -3.7894 0.3301 31 1 2.1859 -3.9121 -1.3299 32 1 -0.3355 -6.3059 1.9622 33 1 -0.0630 -5.2620 3.3812 34 1 -1.3950 -3.4525 2.3438 35 1 -2.3635 -4.9515 2.3718 36 1 -4.2074 -4.3425 1.3714 37 1 -3.6895 -6.0433 1.2871 38 1 -4.8385 -6.2842 -0.8973 39 1 -5.3561 -4.5833 -0.8125 40 1 -7.8082 -4.4721 -0.1053 41 1 -9.3012 -5.7780 1.6497 42 1 -0.5448 -1.9963 -1.0191 43 1 -0.5631 -2.1578 0.7590 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083063154.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:31 Heat of formation + Delta-G solvation = 71.023171 kcal Electronic energy + Delta-G solvation = -27715.005902 eV Core-core repulsion = 23799.462333 eV Total energy + Delta-G solvation = -3915.543568 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.44974 -40.55493 -38.60331 -35.80631 -35.45863 -34.75292 -32.37267 -31.40078 -31.15734 -29.75473 -28.04034 -27.38274 -25.61648 -24.23059 -23.32194 -22.89959 -21.79913 -20.52685 -20.41088 -18.56335 -18.14404 -17.17750 -16.83997 -16.72350 -16.47124 -15.83078 -15.54039 -15.12805 -14.96618 -14.71024 -14.45199 -14.20876 -13.93338 -13.61022 -13.24235 -12.99872 -12.79829 -12.34209 -12.15557 -12.05936 -11.97926 -11.70110 -11.29407 -11.13222 -11.11344 -11.02147 -10.84517 -10.62631 -10.38871 -10.19959 -10.05175 -9.89408 -9.74518 -9.63317 -9.59488 -8.63081 -8.25426 -6.88698 -5.76319 -3.08986 1.36833 2.02769 2.37079 2.55777 2.98971 3.38584 3.43897 3.45634 3.98386 4.08412 4.26017 4.32828 4.44887 4.46800 4.79263 4.83377 4.90077 4.98984 5.02461 5.08890 5.17243 5.22852 5.33470 5.36297 5.43404 5.53585 5.54850 5.70235 5.76872 5.89362 5.90260 5.93046 6.26620 6.31132 6.48349 6.53043 6.56271 7.28876 7.48591 7.56537 7.57666 7.75232 8.12198 8.18436 8.28748 9.15419 9.76290 10.40774 11.36005 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.018172 B = 0.003129 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.427384 B = 8945.299644 C = 9734.654822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.007 4.007 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.280 1.280 7 C -0.224 4.224 8 H 0.080 0.920 9 N -0.598 5.598 10 C 0.142 3.858 11 C 0.065 3.935 12 H 0.072 0.928 13 O -0.360 6.360 14 C 0.051 3.949 15 C 0.068 3.932 16 N -0.588 5.588 17 C 0.521 3.479 18 O -0.543 6.543 19 C -0.153 4.153 20 C 0.131 3.869 21 N -0.289 5.289 22 C -0.046 4.046 23 C -0.056 4.056 24 N -0.274 5.274 25 N -0.087 5.087 26 C 0.084 3.916 27 H 0.103 0.897 28 C 0.182 3.818 29 H 0.252 0.748 30 H 0.056 0.944 31 H 0.038 0.962 32 H 0.049 0.951 33 H 0.102 0.898 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.103 0.897 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.118 0.882 40 H 0.191 0.809 41 H 0.189 0.811 42 H 0.051 0.949 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.336 -11.820 2.292 16.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.353 4.353 8 H 0.098 0.902 9 N -0.325 5.325 10 C 0.015 3.985 11 C 0.006 3.994 12 H 0.090 0.910 13 O -0.278 6.278 14 C -0.027 4.027 15 C -0.055 4.055 16 N -0.320 5.320 17 C 0.308 3.692 18 O -0.421 6.421 19 C -0.194 4.194 20 C 0.010 3.990 21 N -0.083 5.083 22 C -0.197 4.197 23 C -0.213 4.213 24 N -0.140 5.140 25 N -0.067 5.067 26 C -0.021 4.021 27 H 0.121 0.879 28 C 0.057 3.943 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.120 0.880 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.122 0.878 37 H 0.129 0.871 38 H 0.128 0.872 39 H 0.136 0.864 40 H 0.209 0.791 41 H 0.206 0.794 42 H 0.069 0.931 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.424 -12.579 2.464 16.522 hybrid contribution -0.503 1.826 -0.611 1.990 sum -10.927 -10.753 1.852 15.443 Atomic orbital electron populations 1.69956 1.04947 1.25034 1.56962 1.24811 0.95709 0.97706 1.02138 0.86089 0.78677 0.83468 0.77483 1.21614 1.21833 1.20585 1.19058 0.91081 0.82171 1.42941 0.90173 1.44336 1.01011 1.01048 1.86075 1.21701 0.94314 0.85225 0.97267 1.23822 0.96702 0.97740 0.81124 0.90997 1.87916 1.41919 1.79555 1.18376 1.22921 0.86388 0.95037 0.98305 1.22690 0.99711 1.02939 0.80167 1.47587 1.11445 1.65954 1.07045 1.20087 0.83660 0.77340 0.88147 1.90720 1.83429 1.53904 1.14076 1.21895 0.93124 1.04986 0.99406 1.21889 0.81410 1.03950 0.91734 1.47588 1.10703 1.22526 1.27493 1.23778 0.85718 1.04373 1.05830 1.23635 1.02068 0.96814 0.98770 1.75119 0.97077 1.20341 1.21478 1.78282 1.16901 1.08027 1.03471 1.22764 0.83785 0.99705 0.95799 0.87884 1.21232 0.85023 0.86563 1.01525 0.93805 0.92598 0.94483 0.93234 0.87994 0.89349 0.89273 0.87844 0.87136 0.87199 0.86426 0.79149 0.79377 0.93088 0.93261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.75 10.37 55.49 0.58 -26.17 16 2 C -0.01 -0.21 5.48 -17.43 -0.10 -0.30 16 3 Si 0.91 21.93 29.56 -169.99 -5.02 16.91 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.22 -6.17 10.27 -15.06 -0.15 -6.33 16 8 H 0.08 2.13 7.84 -52.48 -0.41 1.72 16 9 N -0.60 -15.02 3.40 -169.99 -0.58 -15.59 16 10 C 0.14 2.86 6.81 -2.23 -0.02 2.85 16 11 C 0.07 1.14 4.12 -24.66 -0.10 1.04 16 12 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 13 O -0.36 -6.31 10.09 -35.23 -0.36 -6.67 16 14 C 0.05 0.66 7.04 37.68 0.27 0.93 16 15 C 0.07 0.88 6.30 -3.22 -0.02 0.86 16 16 N -0.59 -9.11 2.72 -164.39 -0.45 -9.56 16 17 C 0.52 7.43 7.68 -10.99 -0.08 7.34 16 18 O -0.54 -9.38 15.39 5.55 0.09 -9.29 16 19 C -0.15 -1.53 4.17 -27.88 -0.12 -1.65 16 20 C 0.13 1.19 5.74 -4.04 -0.02 1.17 16 21 N -0.29 -2.89 3.44 -61.26 -0.21 -3.11 16 22 C -0.05 -0.37 11.57 -17.05 -0.20 -0.57 16 23 C -0.06 -0.51 12.05 -17.74 -0.21 -0.72 16 24 N -0.27 -3.48 12.41 30.23 0.38 -3.11 16 25 N -0.09 -1.09 12.91 60.35 0.78 -0.31 16 26 C 0.08 1.57 3.09 -67.25 -0.21 1.36 16 27 H 0.10 2.00 7.06 -51.93 -0.37 1.64 16 28 C 0.18 4.35 5.00 -3.32 -0.02 4.34 16 29 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.09 1.33 7.54 -51.93 -0.39 0.94 16 35 H 0.09 0.83 5.95 -51.93 -0.31 0.52 16 36 H 0.10 0.96 7.99 -51.93 -0.41 0.55 16 37 H 0.11 1.01 7.59 -51.93 -0.39 0.61 16 38 H 0.11 1.00 8.10 -51.93 -0.42 0.58 16 39 H 0.12 0.95 8.03 -51.93 -0.42 0.53 16 40 H 0.19 0.83 8.06 -52.48 -0.42 0.41 16 41 H 0.19 1.06 8.06 -52.49 -0.42 0.64 16 42 H 0.05 1.40 7.38 -51.93 -0.38 1.01 16 43 H 0.05 1.30 6.64 -51.93 -0.34 0.96 16 LS Contribution 350.17 15.07 5.28 5.28 Total: -1.00 -34.92 350.17 -6.45 -41.37 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -5.95 Total: -0.06 kcal Atomic # 6 Polarization: 11.29 SS G_CDS: -0.98 Total: 10.31 kcal Atomic # 7 Polarization: -58.34 SS G_CDS: 0.49 Total: -57.85 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -0.27 Total: -15.96 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.92 -6.45 -41.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083063154.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.395 kcal (2) G-P(sol) polarization free energy of solvation -34.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds