Wall clock time and date at job start Fri Apr 10 2020 18:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86808 * 119.99966 * 2 1 4 4 H 1.48500 * 109.46888 * 274.98650 * 3 2 1 5 5 H 1.48503 * 109.47109 * 34.98261 * 3 2 1 6 6 H 1.48499 * 109.47213 * 154.98516 * 3 2 1 7 7 C 1.38803 * 120.00091 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00047 * 186.76358 * 7 2 1 9 9 N 1.36938 * 119.99934 * 6.75894 * 7 2 1 10 10 C 1.47487 * 125.68954 * 173.78022 * 9 7 2 11 11 C 1.55392 * 104.78582 * 155.59937 * 10 9 7 12 12 H 1.08994 * 113.09663 * 157.53891 * 11 10 9 13 13 O 1.42771 * 107.09721 * 281.69405 * 11 10 9 14 14 C 1.42651 * 115.69466 * 166.04548 * 13 11 10 15 15 C 1.53993 * 108.29197 * 295.41580 * 14 13 11 16 16 N 1.47049 * 107.12197 * 55.84048 * 15 14 13 17 17 C 1.34771 * 120.11331 * 130.15441 * 16 15 14 18 18 O 1.21283 * 119.99785 * 179.72205 * 17 16 15 19 19 C 1.50706 * 120.00440 * 359.72997 * 17 16 15 20 20 C 1.53001 * 109.47105 * 179.97438 * 19 17 16 21 21 N 1.46504 * 109.46726 * 179.97438 * 20 19 17 22 22 C 1.35312 * 125.86849 * 124.99983 * 21 20 19 23 23 C 1.35349 * 106.17548 * 180.02562 * 22 21 20 24 24 N 1.33769 * 106.49869 * 0.02562 * 23 22 21 25 25 N 1.28634 * 108.88277 * 359.97438 * 24 23 22 26 26 C 1.45661 * 119.76437 * 309.88285 * 16 15 14 27 27 H 1.09003 * 109.95316 * 165.76388 * 26 16 15 28 28 C 1.47212 * 125.68932 * 353.78703 * 9 7 2 29 29 H 0.97005 * 119.99965 * 0.02562 * 1 2 3 30 30 H 1.09001 * 110.37367 * 36.77810 * 10 9 7 31 31 H 1.08999 * 110.37764 * 274.43142 * 10 9 7 32 32 H 1.09000 * 109.67464 * 55.26866 * 14 13 11 33 33 H 1.08998 * 109.68296 * 175.81962 * 14 13 11 34 34 H 1.08996 * 110.04335 * 296.41963 * 15 14 13 35 35 H 1.08993 * 109.93784 * 175.20397 * 15 14 13 36 36 H 1.08993 * 109.47124 * 59.99475 * 19 17 16 37 37 H 1.09001 * 109.46499 * 299.99269 * 19 17 16 38 38 H 1.09000 * 109.46875 * 59.99837 * 20 19 17 39 39 H 1.08990 * 109.47261 * 299.99373 * 20 19 17 40 40 H 1.08003 * 126.90670 * 359.97321 * 22 21 20 41 41 H 1.08001 * 126.75155 * 179.97438 * 23 22 21 42 42 H 1.08997 * 109.95875 * 61.88953 * 28 9 7 43 43 H 1.09000 * 109.95879 * 300.64906 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3923 2.1073 -1.3948 5 1 1.5042 2.6201 0.8027 6 1 3.5965 1.4122 0.5920 7 6 2.0102 -1.2021 0.0005 8 1 3.0846 -1.2053 0.1107 9 7 1.3327 -2.3839 -0.1385 10 6 1.9479 -3.7164 -0.2844 11 6 0.8649 -4.7105 0.2193 12 1 0.9960 -5.7195 -0.1714 13 8 0.8944 -4.6757 1.6462 14 6 -0.2203 -5.2769 2.3027 15 6 -1.4820 -4.4663 1.9529 16 7 -1.5805 -4.4300 0.4862 17 6 -2.7391 -4.7528 -0.1219 18 8 -2.8195 -4.7173 -1.3315 19 6 -3.9349 -5.1576 0.7011 20 6 -5.1108 -5.4692 -0.2268 21 7 -6.2731 -5.8633 0.5733 22 6 -7.4998 -5.2943 0.5234 23 6 -8.2619 -5.9621 1.4207 24 7 -7.4745 -6.8943 1.9688 25 7 -6.3026 -6.8097 1.4452 26 6 -0.4231 -4.0384 -0.3068 27 1 -0.5815 -4.3035 -1.3522 28 6 -0.1313 -2.5364 -0.1674 29 1 -0.4850 0.8401 -0.0004 30 1 2.8452 -3.7894 0.3301 31 1 2.1859 -3.9121 -1.3299 32 1 -0.3355 -6.3059 1.9622 33 1 -0.0630 -5.2620 3.3812 34 1 -1.3950 -3.4525 2.3438 35 1 -2.3635 -4.9515 2.3718 36 1 -4.2074 -4.3425 1.3714 37 1 -3.6895 -6.0433 1.2871 38 1 -4.8385 -6.2842 -0.8973 39 1 -5.3561 -4.5833 -0.8125 40 1 -7.8082 -4.4721 -0.1053 41 1 -9.3012 -5.7780 1.6497 42 1 -0.5448 -1.9963 -1.0191 43 1 -0.5631 -2.1578 0.7590 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083063154.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:30 Heat of formation + Delta-G solvation = 45.277632 kcal Electronic energy + Delta-G solvation = -27716.122312 eV Core-core repulsion = 23799.462333 eV Total energy + Delta-G solvation = -3916.659978 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.17871 -41.82801 -39.89667 -37.41598 -36.29590 -36.01054 -34.22868 -32.33687 -31.91239 -31.27269 -29.43122 -28.98092 -26.88724 -25.79299 -24.49293 -23.60512 -22.74133 -22.20174 -21.62707 -19.78458 -19.08322 -19.03008 -17.98187 -17.74722 -17.52238 -17.08761 -16.80723 -16.31526 -16.23655 -15.82118 -15.66123 -15.34746 -15.21051 -14.86640 -14.55737 -14.23674 -14.09566 -13.79357 -13.55111 -13.34663 -13.05274 -12.86318 -12.85099 -12.62541 -12.54632 -12.42008 -12.19980 -12.04413 -11.86465 -11.81395 -11.52065 -11.20259 -11.04135 -10.89748 -10.71837 -10.31209 -9.57971 -8.92564 -7.87680 -5.22430 0.66291 1.27277 1.42456 1.45151 1.47118 1.55818 1.65457 1.86196 2.48461 2.76781 3.30888 3.32608 3.35187 3.54708 3.60994 3.64969 3.75197 3.89389 4.03200 4.04965 4.12754 4.21617 4.26010 4.32053 4.35048 4.37324 4.44642 4.59696 4.64682 4.74599 4.85994 4.88268 4.92130 4.97834 5.18176 5.30309 5.44258 5.49147 5.63206 5.68726 6.13583 6.26195 6.35049 6.95166 7.06170 7.53670 7.72714 8.36989 9.23024 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.018172 B = 0.003129 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.427384 B = 8945.299644 C = 9734.654822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.066 4.066 3 Si 0.978 3.022 4 H -0.288 1.288 5 H -0.296 1.296 6 H -0.266 1.266 7 C -0.237 4.237 8 H 0.085 0.915 9 N -0.620 5.620 10 C 0.133 3.867 11 C 0.083 3.917 12 H 0.110 0.890 13 O -0.388 6.388 14 C 0.047 3.953 15 C 0.069 3.931 16 N -0.594 5.594 17 C 0.520 3.480 18 O -0.576 6.576 19 C -0.139 4.139 20 C 0.134 3.866 21 N -0.290 5.290 22 C -0.036 4.036 23 C -0.063 4.063 24 N -0.310 5.310 25 N -0.120 5.120 26 C 0.096 3.904 27 H 0.095 0.905 28 C 0.200 3.800 29 H 0.245 0.755 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.126 0.874 34 H 0.060 0.940 35 H 0.131 0.869 36 H 0.115 0.885 37 H 0.127 0.873 38 H 0.109 0.891 39 H 0.129 0.871 40 H 0.229 0.771 41 H 0.218 0.782 42 H 0.002 0.998 43 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.926 -13.024 2.910 17.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.259 4.259 3 Si 0.807 3.193 4 H -0.215 1.215 5 H -0.222 1.222 6 H -0.191 1.191 7 C -0.366 4.366 8 H 0.103 0.897 9 N -0.347 5.347 10 C 0.007 3.993 11 C 0.024 3.976 12 H 0.127 0.873 13 O -0.307 6.307 14 C -0.030 4.030 15 C -0.053 4.053 16 N -0.326 5.326 17 C 0.309 3.691 18 O -0.456 6.456 19 C -0.179 4.179 20 C 0.013 3.987 21 N -0.084 5.084 22 C -0.187 4.187 23 C -0.221 4.221 24 N -0.176 5.176 25 N -0.100 5.100 26 C -0.010 4.010 27 H 0.113 0.887 28 C 0.074 3.926 29 H 0.054 0.946 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.144 0.856 34 H 0.078 0.922 35 H 0.149 0.851 36 H 0.133 0.867 37 H 0.145 0.855 38 H 0.127 0.873 39 H 0.147 0.853 40 H 0.245 0.755 41 H 0.235 0.765 42 H 0.020 0.980 43 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -10.994 -13.837 3.109 17.944 hybrid contribution -0.364 2.204 -0.817 2.378 sum -11.358 -11.633 2.292 16.419 Atomic orbital electron populations 1.70190 1.06358 1.25129 1.58288 1.25655 0.96578 1.01028 1.02614 0.85055 0.77907 0.79165 0.77191 1.21546 1.22242 1.19086 1.19455 0.91623 0.83495 1.41998 0.89687 1.44620 1.01795 1.02366 1.85880 1.21933 0.95243 0.83861 0.98215 1.23689 0.93964 0.98335 0.81595 0.87275 1.87862 1.44078 1.80583 1.18131 1.23247 0.84588 0.95776 0.99360 1.22842 1.01967 1.02018 0.78499 1.47664 1.10970 1.65952 1.07986 1.20791 0.84060 0.76141 0.88072 1.90705 1.83903 1.55131 1.15829 1.21810 0.91291 1.05844 0.98985 1.21885 0.81023 1.04424 0.91360 1.47655 1.11403 1.22221 1.27086 1.24437 0.84613 1.04377 1.05281 1.24232 1.03285 0.96010 0.98538 1.75068 0.97815 1.21972 1.22699 1.78235 1.17291 1.09506 1.04923 1.22284 0.86262 0.96108 0.96313 0.88746 1.20807 0.84377 0.89850 0.97572 0.94576 0.92453 0.93138 0.90666 0.85583 0.92177 0.85072 0.86714 0.85539 0.87271 0.85287 0.75499 0.76544 0.98026 0.96649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.60 10.37 21.65 0.22 -57.38 16 2 C -0.07 -3.77 5.48 84.86 0.47 -3.31 16 3 Si 0.98 46.00 29.56 68.60 2.03 48.03 16 4 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 5 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.24 -13.33 10.27 84.03 0.86 -12.46 16 8 H 0.09 4.56 7.84 -2.91 -0.02 4.54 16 9 N -0.62 -31.99 3.40 -691.72 -2.35 -34.34 16 10 C 0.13 5.34 6.81 87.01 0.59 5.93 16 11 C 0.08 2.79 4.12 31.93 0.13 2.92 16 12 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 13 O -0.39 -12.98 10.09 -148.98 -1.50 -14.48 16 14 C 0.05 1.08 7.04 72.32 0.51 1.59 16 15 C 0.07 1.66 6.30 86.61 0.55 2.20 16 16 N -0.59 -17.89 2.72 -792.40 -2.15 -20.04 16 17 C 0.52 14.24 7.68 87.66 0.67 14.91 16 18 O -0.58 -19.67 15.39 -3.04 -0.05 -19.71 16 19 C -0.14 -2.46 4.17 29.85 0.12 -2.33 16 20 C 0.13 2.15 5.74 86.38 0.50 2.65 16 21 N -0.29 -5.16 3.44 -347.73 -1.20 -6.36 16 22 C -0.04 -0.48 11.57 83.49 0.97 0.49 16 23 C -0.06 -1.01 12.05 83.73 1.01 0.00 16 24 N -0.31 -7.49 12.41 -58.26 -0.72 -8.21 16 25 N -0.12 -2.84 12.91 37.02 0.48 -2.36 16 26 C 0.10 3.62 3.09 45.88 0.14 3.76 16 27 H 0.09 3.72 7.06 -2.39 -0.02 3.70 16 28 C 0.20 10.01 5.00 86.46 0.43 10.45 16 29 H 0.25 14.48 8.31 -92.70 -0.77 13.71 16 30 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.13 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.06 1.81 7.54 -2.39 -0.02 1.80 16 35 H 0.13 2.02 5.95 -2.39 -0.01 2.00 16 36 H 0.11 1.84 7.99 -2.39 -0.02 1.82 16 37 H 0.13 1.90 7.59 -2.39 -0.02 1.88 16 38 H 0.11 1.81 8.10 -2.39 -0.02 1.79 16 39 H 0.13 1.79 8.03 -2.39 -0.02 1.77 16 40 H 0.23 1.09 8.06 -2.91 -0.02 1.06 16 41 H 0.22 1.84 8.06 -2.91 -0.02 1.82 16 42 H 0.00 0.09 7.38 -2.39 -0.02 0.07 16 43 H 0.02 0.86 6.64 -2.39 -0.02 0.84 16 Total: -1.00 -80.42 350.17 2.73 -77.69 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: 1.02 Total: 10.39 kcal Atomic # 6 Polarization: 19.83 SS G_CDS: 6.95 Total: 26.78 kcal Atomic # 7 Polarization: -122.98 SS G_CDS: -5.72 Total: -128.70 kcal Atomic # 8 Polarization: -32.65 SS G_CDS: -1.55 Total: -34.20 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -80.42 2.73 -77.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083063154.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.969 kcal (2) G-P(sol) polarization free energy of solvation -80.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds