Wall clock time and date at job start Fri Apr 10 2020 18:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50691 * 119.99984 * 2 1 4 4 C 1.53006 * 109.46918 * 125.00293 * 3 2 1 5 5 N 1.46504 * 109.46930 * 179.97438 * 4 3 2 6 6 C 1.34817 * 126.59450 * 125.27280 * 5 4 3 7 7 C 1.36593 * 106.83932 * 180.10249 * 6 5 4 8 8 C 1.47527 * 125.77013 * 179.89432 * 7 6 5 9 9 O 1.21595 * 119.99558 * 359.72597 * 8 7 6 10 10 N 1.34772 * 119.99962 * 179.72047 * 8 7 6 11 11 C 1.46498 * 120.00124 * 180.02562 * 10 8 7 12 12 H 1.08999 * 110.77990 * 36.78232 * 11 10 8 13 13 C 1.54320 * 110.71809 * 273.54731 * 11 10 8 14 14 N 1.47019 * 107.27105 * 263.82374 * 13 11 10 15 15 C 1.36938 * 125.65267 * 181.02425 * 14 13 11 16 16 H 1.07994 * 120.00561 * 161.51230 * 15 14 13 17 17 C 1.38815 * 119.99711 * 341.78318 * 15 14 13 18 18 N 1.31620 * 120.00188 * 156.20996 * 17 15 14 19 19 Si 1.86804 * 119.99893 * 336.21020 * 17 15 14 20 20 H 1.48498 * 109.47148 * 84.65859 * 19 17 15 21 21 H 1.48503 * 109.47027 * 204.66164 * 19 17 15 22 22 H 1.48500 * 109.47071 * 324.65684 * 19 17 15 23 23 C 1.47425 * 108.70411 * 1.28995 * 14 13 11 24 24 C 1.55132 * 104.72045 * 335.55398 * 23 14 13 25 25 H 1.09007 * 111.21915 * 279.17562 * 24 23 14 26 26 O 1.42899 * 110.90939 * 155.27747 * 24 23 14 27 27 N 1.34401 * 108.45884 * 359.63863 * 7 6 5 28 28 N 1.28759 * 109.52037 * 0.22353 * 27 7 6 29 29 H 1.07996 * 119.99917 * 180.02562 * 1 2 3 30 30 H 1.07998 * 119.99420 * 0.02562 * 1 2 3 31 31 H 1.07998 * 119.99420 * 179.97438 * 2 1 3 32 32 H 1.09004 * 109.47423 * 5.00092 * 3 2 1 33 33 H 1.09006 * 109.47346 * 244.99818 * 3 2 1 34 34 H 1.08994 * 109.47397 * 59.99768 * 4 3 2 35 35 H 1.08998 * 109.46963 * 299.99702 * 4 3 2 36 36 H 1.08003 * 126.57633 * 359.97197 * 6 5 4 37 37 H 0.96998 * 120.00359 * 359.97438 * 10 8 7 38 38 H 1.09003 * 109.88167 * 144.40996 * 13 11 10 39 39 H 1.08994 * 110.01291 * 23.31745 * 13 11 10 40 40 H 0.96997 * 119.99857 * 180.02562 * 18 17 15 41 41 H 1.09004 * 110.36737 * 94.47912 * 23 14 13 42 42 H 1.09000 * 110.37185 * 216.80576 * 23 14 13 43 43 H 0.96701 * 114.00414 * 67.96944 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3329 1.1816 5 7 3.7681 2.6014 1.1813 6 6 3.8539 3.4804 2.2000 7 6 4.6300 4.5165 1.7643 8 6 4.9920 5.7122 2.5490 9 8 4.5856 5.8376 3.6881 10 7 5.7730 6.6653 2.0033 11 6 6.1329 7.8524 2.7827 12 1 6.2938 7.5938 3.8292 13 6 5.0482 8.9420 2.6501 14 7 5.4857 9.8673 1.5946 15 6 4.8107 10.9856 1.1834 16 1 5.3279 11.7558 0.6306 17 6 3.4630 11.1319 1.4821 18 7 2.9252 12.3324 1.5259 19 14 2.4127 9.6249 1.8219 20 1 2.5485 9.2386 3.2493 21 1 0.9910 9.9355 1.5262 22 1 2.8638 8.5027 0.9603 23 6 6.7682 9.3883 1.0477 24 6 7.3903 8.5394 2.1875 25 1 7.8780 9.1719 2.9294 26 8 8.3027 7.5725 1.6635 27 7 5.0129 4.2598 0.5018 28 7 4.5200 3.1320 0.1236 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5399 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6214 1.4026 -0.9314 34 1 3.7400 0.5064 1.0921 35 1 2.4774 1.2354 2.1130 36 1 3.3950 3.3847 3.1729 37 1 6.0976 6.5650 1.0947 38 1 4.9442 9.4783 3.5934 39 1 4.0960 8.4889 2.3745 40 1 1.9835 12.4346 1.7350 41 1 6.5978 8.7738 0.1637 42 1 7.4160 10.2309 0.8060 43 1 9.1042 7.9549 1.2807 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083846861.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:44 Heat of formation + Delta-G solvation = 41.630851 kcal Electronic energy + Delta-G solvation = -26950.270777 eV Core-core repulsion = 23033.452662 eV Total energy + Delta-G solvation = -3916.818115 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.31167 -41.07355 -39.37909 -37.36270 -36.82545 -35.41601 -34.73802 -33.90633 -32.21864 -30.85983 -30.07462 -29.31243 -26.29152 -25.61645 -24.83554 -22.86096 -22.65056 -21.91766 -21.45847 -20.79074 -19.34765 -18.96091 -18.53293 -17.52281 -17.28656 -17.13498 -17.00614 -16.30689 -16.15075 -15.86233 -15.64372 -15.50760 -15.37756 -14.92716 -14.80099 -14.18796 -14.09587 -13.97522 -13.72542 -13.68418 -13.20439 -13.18088 -13.11206 -12.71148 -12.68530 -12.25815 -12.19037 -12.06292 -11.99691 -11.50607 -11.37920 -11.33115 -11.03334 -10.76758 -10.50316 -10.32168 -10.12049 -9.14556 -8.26146 -5.50006 0.06869 0.53297 0.98425 1.22632 1.28536 1.36819 1.37511 2.00184 2.15037 2.32033 2.82124 3.07102 3.12578 3.31362 3.36238 3.59054 3.72654 3.75682 3.77947 3.88669 4.00688 4.17565 4.21369 4.30624 4.32121 4.36673 4.47159 4.54847 4.65317 4.76430 4.81101 4.90411 4.94072 5.03567 5.09355 5.35341 5.38765 5.60399 5.68753 5.80264 6.04096 6.34193 6.66614 6.82137 6.90833 7.05781 7.46234 8.01185 8.93836 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.013813 B = 0.003445 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.646660 B = 8125.593334 C = 9422.808040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.156 4.156 3 C -0.105 4.105 4 C 0.118 3.882 5 N -0.348 5.348 6 C 0.112 3.888 7 C -0.128 4.128 8 C 0.599 3.401 9 O -0.569 6.569 10 N -0.688 5.688 11 C 0.148 3.852 12 H 0.113 0.887 13 C 0.105 3.895 14 N -0.620 5.620 15 C -0.227 4.227 16 H 0.076 0.924 17 C -0.025 4.025 18 N -0.946 5.946 19 Si 0.938 3.062 20 H -0.281 1.281 21 H -0.306 1.306 22 H -0.289 1.289 23 C 0.098 3.902 24 C 0.108 3.892 25 H 0.108 0.892 26 O -0.558 6.558 27 N -0.225 5.225 28 N -0.082 5.082 29 H 0.114 0.886 30 H 0.090 0.910 31 H 0.134 0.866 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.123 0.877 35 H 0.139 0.861 36 H 0.239 0.761 37 H 0.415 0.585 38 H 0.044 0.956 39 H 0.013 0.987 40 H 0.263 0.737 41 H 0.033 0.967 42 H 0.069 0.931 43 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.508 -27.683 1.017 27.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.174 4.174 3 C -0.143 4.143 4 C 0.000 4.000 5 N -0.132 5.132 6 C -0.046 4.046 7 C -0.268 4.268 8 C 0.384 3.616 9 O -0.448 6.448 10 N -0.337 5.337 11 C 0.042 3.958 12 H 0.130 0.870 13 C -0.021 4.021 14 N -0.348 5.348 15 C -0.356 4.356 16 H 0.093 0.907 17 C -0.221 4.221 18 N -0.593 5.593 19 Si 0.771 3.229 20 H -0.208 1.208 21 H -0.235 1.235 22 H -0.217 1.217 23 C -0.027 4.027 24 C 0.047 3.953 25 H 0.126 0.874 26 O -0.366 6.366 27 N -0.099 5.099 28 N -0.062 5.062 29 H 0.133 0.867 30 H 0.109 0.891 31 H 0.151 0.849 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.141 0.859 35 H 0.157 0.843 36 H 0.255 0.745 37 H 0.251 0.749 38 H 0.062 0.938 39 H 0.030 0.970 40 H 0.073 0.927 41 H 0.051 0.949 42 H 0.087 0.913 43 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 3.097 -28.098 0.559 28.274 hybrid contribution -0.981 0.374 0.194 1.068 sum 2.116 -27.724 0.753 27.815 Atomic orbital electron populations 1.24108 0.96178 1.02662 0.99404 1.22758 0.95878 0.97445 1.01340 1.20977 0.97830 0.97272 0.98262 1.22530 0.94780 0.79814 1.02885 1.50842 1.34662 1.18212 1.09521 1.23841 0.96431 0.87926 0.96399 1.21412 1.10870 1.00663 0.93857 1.17103 0.77864 0.81469 0.85158 1.90765 1.55844 1.79473 1.18716 1.45484 1.50150 1.19432 1.18644 1.21971 0.93050 0.83600 0.97198 0.86953 1.22170 0.96222 0.91183 0.92519 1.44738 1.23683 1.27138 1.39247 1.18661 0.91497 0.93739 1.31698 0.90653 1.25396 0.97752 0.97666 1.01267 1.69928 1.13482 1.21951 1.53893 0.86072 0.77595 0.81263 0.77963 1.20850 1.23505 1.21668 1.22563 0.87097 0.97358 0.95656 1.23048 0.88339 0.88905 0.95007 0.87421 1.86424 1.34636 1.34752 1.80769 1.74635 1.16308 1.08317 1.10623 1.81853 1.09843 1.04838 1.09699 0.86748 0.89125 0.84861 0.91907 0.90455 0.85854 0.84275 0.74482 0.74879 0.93828 0.96960 0.92744 0.94898 0.91312 0.74548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.58 14.32 67.77 0.97 -0.61 16 2 C -0.16 -1.18 9.52 25.64 0.24 -0.94 16 3 C -0.11 -1.15 5.86 29.85 0.17 -0.97 16 4 C 0.12 1.01 6.52 86.38 0.56 1.57 16 5 N -0.35 -6.50 3.69 -347.09 -1.28 -7.78 16 6 C 0.11 2.38 11.27 83.85 0.95 3.32 16 7 C -0.13 -3.91 6.99 40.82 0.29 -3.62 16 8 C 0.60 21.46 7.81 86.69 0.68 22.14 16 9 O -0.57 -22.41 16.59 -4.01 -0.07 -22.47 16 10 N -0.69 -24.48 4.78 -440.10 -2.10 -26.59 16 11 C 0.15 5.26 3.13 46.18 0.14 5.41 16 12 H 0.11 3.79 7.70 -2.39 -0.02 3.78 16 13 C 0.10 4.78 4.92 86.73 0.43 5.21 16 14 N -0.62 -29.89 3.20 -691.55 -2.22 -32.11 16 15 C -0.23 -13.13 10.56 84.03 0.89 -12.25 16 16 H 0.08 4.57 8.06 -2.91 -0.02 4.54 16 17 C -0.03 -1.54 5.43 84.86 0.46 -1.08 16 18 N -0.95 -60.50 13.97 21.65 0.30 -60.20 16 19 Si 0.94 51.17 24.40 68.60 1.67 52.84 16 20 H -0.28 -15.08 6.83 99.48 0.68 -14.40 16 21 H -0.31 -16.59 7.11 99.48 0.71 -15.89 16 22 H -0.29 -15.97 6.89 99.48 0.69 -15.28 16 23 C 0.10 3.57 6.95 86.93 0.60 4.18 16 24 C 0.11 3.11 4.23 32.06 0.14 3.25 16 25 H 0.11 2.68 8.14 -2.38 -0.02 2.66 16 26 O -0.56 -13.13 12.63 -148.98 -1.88 -15.01 16 27 N -0.23 -7.13 12.04 -49.99 -0.60 -7.73 16 28 N -0.08 -2.20 13.65 37.02 0.51 -1.70 16 29 H 0.11 0.68 8.06 -2.91 -0.02 0.65 16 30 H 0.09 0.90 7.84 -2.91 -0.02 0.87 16 31 H 0.13 0.53 8.06 -2.91 -0.02 0.51 16 32 H 0.06 0.87 7.79 -2.39 -0.02 0.85 16 33 H 0.08 1.08 8.14 -2.38 -0.02 1.07 16 34 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.14 0.36 8.08 -2.39 -0.02 0.34 16 36 H 0.24 3.20 8.06 -2.91 -0.02 3.18 16 37 H 0.41 14.37 7.88 -92.71 -0.73 13.64 16 38 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.01 0.66 3.42 -2.39 -0.01 0.65 16 40 H 0.26 16.08 8.31 -92.71 -0.77 15.31 16 41 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 43 H 0.40 5.44 9.12 -74.06 -0.68 4.76 16 Total: -1.00 -82.22 364.55 0.45 -81.77 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -0.40 Total: 13.36 kcal Atomic # 6 Polarization: 19.10 SS G_CDS: 6.52 Total: 25.62 kcal Atomic # 7 Polarization: -130.71 SS G_CDS: -5.39 Total: -136.10 kcal Atomic # 8 Polarization: -35.53 SS G_CDS: -1.95 Total: -37.48 kcal Atomic # 14 Polarization: 51.17 SS G_CDS: 1.67 Total: 52.84 kcal Total: -82.22 0.45 -81.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083846861.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.397 kcal (2) G-P(sol) polarization free energy of solvation -82.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds