Wall clock time and date at job start Fri Apr 10 2020 18:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00222 * 2 1 4 4 H 1.48498 * 109.47028 * 240.00373 * 3 2 1 5 5 H 1.48503 * 109.46851 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47412 * 119.99982 * 3 2 1 7 7 C 1.38817 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99438 * 180.27052 * 7 2 1 9 9 N 1.36935 * 119.99990 * 0.02562 * 7 2 1 10 10 C 1.47026 * 125.64458 * 179.97438 * 9 7 2 11 11 C 1.54325 * 107.26658 * 181.02332 * 10 9 7 12 12 H 1.08996 * 110.72050 * 140.55670 * 11 10 9 13 13 N 1.46503 * 110.71811 * 263.82756 * 11 10 9 14 14 C 1.34776 * 120.00155 * 273.54768 * 13 11 10 15 15 O 1.21601 * 119.99831 * 0.02562 * 14 13 11 16 16 C 1.47526 * 120.00201 * 179.97438 * 14 13 11 17 17 C 1.36594 * 125.77139 * 179.71434 * 16 14 13 18 18 N 1.34813 * 106.83956 * 179.89967 * 17 16 14 19 19 C 1.46497 * 126.59411 * 180.15136 * 18 17 16 20 20 C 1.53003 * 109.47183 * 125.27414 * 19 18 17 21 21 C 1.52997 * 117.50018 * 243.62501 * 20 19 18 22 22 C 1.52995 * 117.49944 * 174.99825 * 20 19 18 23 23 N 1.40215 * 106.80706 * 0.35926 * 18 17 16 24 24 N 1.28757 * 108.36921 * 359.77103 * 23 18 17 25 25 C 1.55155 * 102.94360 * 22.19234 * 11 10 9 26 26 H 1.08993 * 111.00355 * 82.61403 * 25 11 10 27 27 O 1.42910 * 111.00217 * 206.42690 * 25 11 10 28 28 C 1.47421 * 125.64725 * 359.68754 * 9 7 2 29 29 H 0.96996 * 119.99743 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.87892 * 300.43506 * 10 9 7 31 31 H 1.09001 * 109.88127 * 61.44933 * 10 9 7 32 32 H 0.96996 * 119.99996 * 93.54834 * 13 11 10 33 33 H 1.08006 * 126.57709 * 0.04425 * 17 16 14 34 34 H 1.08999 * 109.47269 * 245.27327 * 19 18 17 35 35 H 1.08995 * 109.47258 * 5.27738 * 19 18 17 36 36 H 1.09002 * 115.54794 * 29.33104 * 20 19 18 37 37 H 1.09009 * 117.49725 * 359.97438 * 21 20 19 38 38 H 1.09000 * 117.50417 * 145.01627 * 21 20 19 39 39 H 1.09000 * 117.50276 * 214.97580 * 22 20 19 40 40 H 1.08994 * 117.50069 * 0.02562 * 22 20 19 41 41 H 0.96700 * 113.99676 * 180.02562 * 27 25 11 42 42 H 1.09001 * 110.36459 * 274.74494 * 28 9 7 43 43 H 1.09000 * 110.37050 * 37.07344 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0050 9 7 1.3255 -2.3881 0.0005 10 6 1.9318 -3.7275 0.0005 11 6 0.7784 -4.7524 -0.0258 12 1 1.0235 -5.5923 -0.6758 13 7 0.4667 -5.2168 1.3283 14 6 1.1464 -6.2527 1.8586 15 8 2.0188 -6.8016 1.2134 16 6 0.8330 -6.7200 3.2224 17 6 1.4410 -7.7573 3.8704 18 7 0.8647 -7.8502 5.0856 19 6 1.1926 -8.8172 6.1361 20 6 1.5250 -8.0714 7.4301 21 6 2.9459 -8.2097 7.9802 22 6 1.7817 -8.9107 8.6833 23 7 -0.1123 -6.8465 5.1488 24 7 -0.1032 -6.2007 4.0349 25 6 -0.4020 -3.9323 -0.6102 26 1 -0.3534 -3.8989 -1.6985 27 8 -1.6569 -4.4573 -0.1721 28 6 -0.1415 -2.5331 0.0065 29 1 -0.4849 0.8400 -0.0004 30 1 2.5577 -3.8510 -0.8833 31 1 2.5310 -3.8632 0.9009 32 1 -0.2289 -4.7788 1.8431 33 1 2.2333 -8.3817 3.4844 34 1 0.3394 -9.4743 6.3044 35 1 2.0531 -9.4108 5.8278 36 1 1.0255 -7.1114 7.5609 37 1 3.6439 -8.8324 7.4205 38 1 3.3817 -7.3406 8.4730 39 1 1.4516 -8.5028 9.6386 40 1 1.7143 -9.9942 8.5858 41 1 -2.4243 -3.9772 -0.5122 42 1 -0.5229 -2.4889 1.0267 43 1 -0.6020 -1.7576 -0.6055 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083895718.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:48 Heat of formation + Delta-G solvation = 75.045544 kcal Electronic energy + Delta-G solvation = -26739.105150 eV Core-core repulsion = 22823.736005 eV Total energy + Delta-G solvation = -3915.369145 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.23017 -39.41032 -38.17584 -37.58508 -35.01023 -34.35330 -33.62479 -31.68485 -30.89651 -28.66889 -27.97732 -26.97486 -24.56231 -23.50312 -22.93201 -22.67055 -21.40001 -20.43922 -20.28759 -19.61064 -18.28973 -17.02652 -16.80071 -16.50954 -16.22978 -15.71213 -15.37145 -14.87337 -14.82761 -14.62218 -14.27433 -14.01958 -13.91076 -13.58496 -12.94098 -12.72481 -12.50725 -12.33004 -12.20897 -12.09856 -12.02150 -11.31170 -11.27704 -11.07584 -11.04403 -10.91633 -10.82492 -10.75407 -10.36065 -10.19670 -10.07458 -9.84726 -9.68981 -9.30768 -9.14217 -8.71092 -8.52038 -6.87039 -5.67673 -3.09624 1.08001 1.81570 1.85442 3.19160 3.40888 3.44163 3.45608 3.46761 3.54506 3.83957 4.21126 4.22847 4.39411 4.43261 4.45803 4.63045 4.71659 4.77981 4.86055 5.00816 5.11709 5.29714 5.34592 5.37271 5.43173 5.57057 5.57782 5.63196 5.75284 5.81346 5.91821 6.18887 6.23686 6.29432 6.53707 6.68800 7.02878 7.35910 7.57514 7.75662 7.80388 8.06790 8.13415 8.30571 8.53993 9.18698 9.79246 10.42367 11.36320 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.015376 B = 0.002843 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.628660 B = 9846.883349 C =10736.279833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.011 4.011 3 Si 0.917 3.083 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.221 4.221 8 H 0.079 0.921 9 N -0.600 5.600 10 C 0.126 3.874 11 C 0.144 3.856 12 H 0.093 0.907 13 N -0.680 5.680 14 C 0.601 3.399 15 O -0.551 6.551 16 C -0.092 4.092 17 C 0.090 3.910 18 N -0.362 5.362 19 C 0.156 3.844 20 C -0.176 4.176 21 C -0.176 4.176 22 C -0.165 4.165 23 N -0.065 5.065 24 N -0.198 5.198 25 C 0.063 3.937 26 H 0.072 0.928 27 O -0.564 6.564 28 C 0.127 3.873 29 H 0.253 0.747 30 H 0.037 0.963 31 H 0.032 0.968 32 H 0.414 0.586 33 H 0.203 0.797 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.121 0.879 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.378 0.622 42 H 0.023 0.977 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.864 -19.743 11.734 22.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.207 4.207 3 Si 0.747 3.253 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.349 4.349 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.000 4.000 11 C 0.039 3.961 12 H 0.111 0.889 13 N -0.329 5.329 14 C 0.385 3.615 15 O -0.429 6.429 16 C -0.231 4.231 17 C -0.067 4.067 18 N -0.147 5.147 19 C 0.035 3.965 20 C -0.195 4.195 21 C -0.213 4.213 22 C -0.203 4.203 23 N -0.046 5.046 24 N -0.072 5.072 25 C 0.003 3.997 26 H 0.090 0.910 27 O -0.369 6.369 28 C 0.001 3.999 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.250 0.750 33 H 0.220 0.780 34 H 0.120 0.880 35 H 0.123 0.877 36 H 0.139 0.861 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.117 0.883 41 H 0.225 0.775 42 H 0.040 0.960 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 0.742 -19.687 12.446 23.303 hybrid contribution 0.645 0.934 -0.375 1.196 sum 1.387 -18.753 12.072 22.345 Atomic orbital electron populations 1.69731 1.04889 1.24969 1.57678 1.24786 0.95771 0.97764 1.02343 0.86110 0.78377 0.82852 0.77912 1.21116 1.21569 1.21223 1.19050 0.90550 0.82232 1.43098 0.90346 1.44330 1.01497 0.99845 1.87094 1.21754 0.93688 0.85454 0.99153 1.22053 0.95061 0.96369 0.82637 0.88933 1.45490 1.38469 1.32219 1.16693 1.16726 0.81499 0.80134 0.83129 1.90773 1.32626 1.58276 1.61230 1.21552 1.01801 1.00996 0.98793 1.23329 0.98914 0.98925 0.85521 1.50439 1.26603 1.25692 1.11952 1.21553 1.02738 0.88155 0.84090 1.22550 1.01159 1.02468 0.93331 1.23148 0.90852 1.03430 1.03855 1.22988 1.02415 0.99028 0.95862 1.81975 1.08109 0.98835 1.15639 1.74705 1.15072 1.19064 0.98324 1.23744 0.82421 0.96039 0.97518 0.90987 1.86364 1.15502 1.58842 1.76181 1.22623 0.85521 0.92508 0.99207 0.93622 0.94491 0.94981 0.74956 0.77984 0.87991 0.87699 0.86072 0.88305 0.88251 0.88053 0.88255 0.77462 0.95956 0.87104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.56 10.08 55.49 0.56 -26.00 16 2 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 3 Si 0.92 22.14 29.55 -169.99 -5.02 17.11 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 7 C -0.22 -6.18 10.27 -15.06 -0.15 -6.34 16 8 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 9 N -0.60 -15.41 3.39 -169.94 -0.58 -15.98 16 10 C 0.13 2.79 6.98 -3.06 -0.02 2.77 16 11 C 0.14 2.79 3.13 -66.09 -0.21 2.58 16 12 H 0.09 1.71 7.70 -51.93 -0.40 1.31 16 13 N -0.68 -12.75 4.78 -53.07 -0.25 -13.00 16 14 C 0.60 10.82 7.81 -12.47 -0.10 10.72 16 15 O -0.55 -10.69 16.59 5.28 0.09 -10.60 16 16 C -0.09 -1.43 6.99 -83.55 -0.58 -2.02 16 17 C 0.09 1.04 11.27 -16.84 -0.19 0.85 16 18 N -0.36 -3.83 3.69 -61.06 -0.23 -4.06 16 19 C 0.16 0.94 6.82 -4.04 -0.03 0.92 16 20 C -0.18 -1.16 5.93 -90.62 -0.54 -1.70 16 21 C -0.18 -0.97 10.18 -26.73 -0.27 -1.24 16 22 C -0.17 -0.77 10.25 -26.73 -0.27 -1.04 16 23 N -0.07 -0.94 13.48 60.35 0.81 -0.12 16 24 N -0.20 -3.26 12.04 32.85 0.40 -2.87 16 25 C 0.06 1.20 4.23 -24.47 -0.10 1.10 16 26 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 27 O -0.56 -9.53 12.63 -35.23 -0.45 -9.97 16 28 C 0.13 3.01 5.62 -2.42 -0.01 2.99 16 29 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.03 0.75 8.05 -51.93 -0.42 0.33 16 32 H 0.41 7.96 7.88 -40.82 -0.32 7.64 16 33 H 0.20 1.64 8.06 -52.48 -0.42 1.22 16 34 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.10 0.35 7.82 -51.93 -0.41 -0.06 16 36 H 0.12 1.08 7.94 -51.93 -0.41 0.67 16 37 H 0.10 0.43 8.03 -51.92 -0.42 0.02 16 38 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.38 4.91 9.12 45.56 0.42 5.33 16 42 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.11 2.90 5.86 -51.93 -0.30 2.60 16 LS Contribution 366.13 15.07 5.52 5.52 Total: -1.00 -34.25 366.13 -6.92 -41.17 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -5.19 Total: 9.63 kcal Atomic # 6 Polarization: 11.75 SS G_CDS: -2.58 Total: 9.17 kcal Atomic # 7 Polarization: -62.74 SS G_CDS: 0.71 Total: -62.03 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -0.36 Total: -20.58 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.25 -6.92 -41.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083895718.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.214 kcal (2) G-P(sol) polarization free energy of solvation -34.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds