Wall clock time and date at job start Fri Apr 10 2020 18:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00222 * 2 1 4 4 H 1.48498 * 109.47028 * 240.00373 * 3 2 1 5 5 H 1.48503 * 109.46851 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47412 * 119.99982 * 3 2 1 7 7 C 1.38817 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99438 * 180.27052 * 7 2 1 9 9 N 1.36935 * 119.99990 * 0.02562 * 7 2 1 10 10 C 1.47026 * 125.64458 * 179.97438 * 9 7 2 11 11 C 1.54325 * 107.26658 * 181.02332 * 10 9 7 12 12 H 1.08996 * 110.72050 * 140.55670 * 11 10 9 13 13 N 1.46503 * 110.71811 * 263.82756 * 11 10 9 14 14 C 1.34776 * 120.00155 * 273.54768 * 13 11 10 15 15 O 1.21601 * 119.99831 * 0.02562 * 14 13 11 16 16 C 1.47526 * 120.00201 * 179.97438 * 14 13 11 17 17 C 1.36594 * 125.77139 * 179.71434 * 16 14 13 18 18 N 1.34813 * 106.83956 * 179.89967 * 17 16 14 19 19 C 1.46497 * 126.59411 * 180.15136 * 18 17 16 20 20 C 1.53003 * 109.47183 * 125.27414 * 19 18 17 21 21 C 1.52997 * 117.50018 * 243.62501 * 20 19 18 22 22 C 1.52995 * 117.49944 * 174.99825 * 20 19 18 23 23 N 1.40215 * 106.80706 * 0.35926 * 18 17 16 24 24 N 1.28757 * 108.36921 * 359.77103 * 23 18 17 25 25 C 1.55155 * 102.94360 * 22.19234 * 11 10 9 26 26 H 1.08993 * 111.00355 * 82.61403 * 25 11 10 27 27 O 1.42910 * 111.00217 * 206.42690 * 25 11 10 28 28 C 1.47421 * 125.64725 * 359.68754 * 9 7 2 29 29 H 0.96996 * 119.99743 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.87892 * 300.43506 * 10 9 7 31 31 H 1.09001 * 109.88127 * 61.44933 * 10 9 7 32 32 H 0.96996 * 119.99996 * 93.54834 * 13 11 10 33 33 H 1.08006 * 126.57709 * 0.04425 * 17 16 14 34 34 H 1.08999 * 109.47269 * 245.27327 * 19 18 17 35 35 H 1.08995 * 109.47258 * 5.27738 * 19 18 17 36 36 H 1.09002 * 115.54794 * 29.33104 * 20 19 18 37 37 H 1.09009 * 117.49725 * 359.97438 * 21 20 19 38 38 H 1.09000 * 117.50417 * 145.01627 * 21 20 19 39 39 H 1.09000 * 117.50276 * 214.97580 * 22 20 19 40 40 H 1.08994 * 117.50069 * 0.02562 * 22 20 19 41 41 H 0.96700 * 113.99676 * 180.02562 * 27 25 11 42 42 H 1.09001 * 110.36459 * 274.74494 * 28 9 7 43 43 H 1.09000 * 110.37050 * 37.07344 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0050 9 7 1.3255 -2.3881 0.0005 10 6 1.9318 -3.7275 0.0005 11 6 0.7784 -4.7524 -0.0258 12 1 1.0235 -5.5923 -0.6758 13 7 0.4667 -5.2168 1.3283 14 6 1.1464 -6.2527 1.8586 15 8 2.0188 -6.8016 1.2134 16 6 0.8330 -6.7200 3.2224 17 6 1.4410 -7.7573 3.8704 18 7 0.8647 -7.8502 5.0856 19 6 1.1926 -8.8172 6.1361 20 6 1.5250 -8.0714 7.4301 21 6 2.9459 -8.2097 7.9802 22 6 1.7817 -8.9107 8.6833 23 7 -0.1123 -6.8465 5.1488 24 7 -0.1032 -6.2007 4.0349 25 6 -0.4020 -3.9323 -0.6102 26 1 -0.3534 -3.8989 -1.6985 27 8 -1.6569 -4.4573 -0.1721 28 6 -0.1415 -2.5331 0.0065 29 1 -0.4849 0.8400 -0.0004 30 1 2.5577 -3.8510 -0.8833 31 1 2.5310 -3.8632 0.9009 32 1 -0.2289 -4.7788 1.8431 33 1 2.2333 -8.3817 3.4844 34 1 0.3394 -9.4743 6.3044 35 1 2.0531 -9.4108 5.8278 36 1 1.0255 -7.1114 7.5609 37 1 3.6439 -8.8324 7.4205 38 1 3.3817 -7.3406 8.4730 39 1 1.4516 -8.5028 9.6386 40 1 1.7143 -9.9942 8.5858 41 1 -2.4243 -3.9772 -0.5122 42 1 -0.5229 -2.4889 1.0267 43 1 -0.6020 -1.7576 -0.6055 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083895718.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:47 Heat of formation + Delta-G solvation = 48.067668 kcal Electronic energy + Delta-G solvation = -26740.274998 eV Core-core repulsion = 22823.736005 eV Total energy + Delta-G solvation = -3916.538993 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.24553 -40.89216 -39.20546 -38.61739 -36.63103 -35.45795 -35.01932 -33.52060 -32.04023 -30.26028 -29.07257 -28.55733 -26.44024 -24.76698 -23.60227 -23.26395 -22.37279 -22.20088 -21.45791 -21.02835 -19.39312 -18.87879 -18.25176 -17.50982 -17.24459 -17.19893 -16.66657 -16.15152 -15.96990 -15.72985 -15.50291 -15.29447 -15.05230 -14.70934 -14.50658 -14.39236 -14.02848 -13.86435 -13.33477 -13.16810 -12.87141 -12.82064 -12.72596 -12.69868 -12.42264 -12.23990 -12.08395 -11.93608 -11.65988 -11.62747 -11.33493 -11.17773 -10.97229 -10.82358 -10.73966 -10.40356 -10.02065 -8.93124 -7.79317 -5.24650 0.14550 0.61020 1.08105 1.46961 1.50010 1.56296 2.10555 2.23924 2.47862 2.78187 3.08030 3.20683 3.27882 3.31285 3.68264 3.73072 3.81523 3.87022 3.91762 3.96649 4.03694 4.04650 4.14829 4.33490 4.44203 4.51111 4.56149 4.65306 4.76757 4.77934 4.88303 4.93822 4.98696 5.12868 5.22337 5.41991 5.44894 5.47670 5.50567 5.72932 6.25031 6.44506 6.86883 6.91758 7.07443 7.13930 7.72751 8.35510 9.21845 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.015376 B = 0.002843 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.628660 B = 9846.883349 C =10736.279833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.063 4.063 3 Si 0.982 3.018 4 H -0.274 1.274 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.242 4.242 8 H 0.079 0.921 9 N -0.618 5.618 10 C 0.127 3.873 11 C 0.152 3.848 12 H 0.109 0.891 13 N -0.686 5.686 14 C 0.603 3.397 15 O -0.568 6.568 16 C -0.126 4.126 17 C 0.115 3.885 18 N -0.345 5.345 19 C 0.147 3.853 20 C -0.194 4.194 21 C -0.179 4.179 22 C -0.149 4.149 23 N -0.087 5.087 24 N -0.231 5.231 25 C 0.086 3.914 26 H 0.091 0.909 27 O -0.563 6.563 28 C 0.135 3.865 29 H 0.249 0.751 30 H 0.046 0.954 31 H 0.016 0.984 32 H 0.410 0.590 33 H 0.242 0.758 34 H 0.121 0.879 35 H 0.144 0.856 36 H 0.090 0.910 37 H 0.116 0.884 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.122 0.878 41 H 0.397 0.603 42 H -0.008 1.008 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.875 -22.122 12.138 25.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.256 4.256 3 Si 0.810 3.190 4 H -0.200 1.200 5 H -0.217 1.217 6 H -0.209 1.209 7 C -0.371 4.371 8 H 0.097 0.903 9 N -0.346 5.346 10 C 0.000 4.000 11 C 0.046 3.954 12 H 0.126 0.874 13 N -0.334 5.334 14 C 0.388 3.612 15 O -0.447 6.447 16 C -0.266 4.266 17 C -0.043 4.043 18 N -0.129 5.129 19 C 0.029 3.971 20 C -0.213 4.213 21 C -0.216 4.216 22 C -0.186 4.186 23 N -0.067 5.067 24 N -0.104 5.104 25 C 0.025 3.975 26 H 0.108 0.892 27 O -0.370 6.370 28 C 0.009 3.991 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.034 0.966 32 H 0.245 0.755 33 H 0.259 0.741 34 H 0.139 0.861 35 H 0.162 0.838 36 H 0.108 0.892 37 H 0.135 0.865 38 H 0.106 0.894 39 H 0.117 0.883 40 H 0.141 0.859 41 H 0.247 0.753 42 H 0.010 0.990 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.735 -22.097 12.882 25.637 hybrid contribution 0.354 1.592 -0.367 1.671 sum 2.089 -20.505 12.515 24.113 Atomic orbital electron populations 1.69967 1.06029 1.25259 1.58222 1.25608 0.96723 1.00852 1.02378 0.85105 0.77144 0.78671 0.78100 1.20002 1.21721 1.20943 1.19392 0.90996 0.83544 1.43136 0.90291 1.44577 1.02457 1.00588 1.86973 1.21837 0.94712 0.84781 0.98627 1.21934 0.94008 0.95982 0.83488 0.87350 1.45520 1.38682 1.32691 1.16516 1.17008 0.80797 0.79457 0.83921 1.90745 1.33213 1.58739 1.62018 1.21452 1.03657 1.03186 0.98269 1.23844 0.98158 0.97345 0.84951 1.50754 1.24822 1.24848 1.12479 1.22093 1.05128 0.87349 0.82578 1.22438 1.02061 1.01976 0.94807 1.23242 0.90766 1.03553 1.03993 1.23089 1.00815 1.00014 0.94719 1.81883 1.09682 1.00101 1.15078 1.74678 1.16212 1.20376 0.99137 1.23383 0.83383 0.92748 0.97942 0.89160 1.86345 1.15472 1.58711 1.76447 1.22404 0.84497 0.94883 0.97302 0.94129 0.93574 0.96584 0.75454 0.74144 0.86126 0.83825 0.89203 0.86536 0.89370 0.88260 0.85943 0.75300 0.98995 0.89645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.64 10.08 21.65 0.22 -55.42 16 2 C -0.06 -3.57 5.49 84.86 0.47 -3.10 16 3 Si 0.98 45.94 29.55 68.60 2.03 47.97 16 4 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 6 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 7 C -0.24 -13.77 10.27 84.04 0.86 -12.91 16 8 H 0.08 4.35 7.83 -2.91 -0.02 4.32 16 9 N -0.62 -32.41 3.39 -691.57 -2.35 -34.76 16 10 C 0.13 5.64 6.98 86.73 0.61 6.25 16 11 C 0.15 5.79 3.13 46.18 0.14 5.94 16 12 H 0.11 3.85 7.70 -2.39 -0.02 3.83 16 13 N -0.69 -25.88 4.78 -440.07 -2.10 -27.98 16 14 C 0.60 21.49 7.81 86.69 0.68 22.16 16 15 O -0.57 -21.44 16.59 -4.03 -0.07 -21.51 16 16 C -0.13 -3.85 6.99 40.82 0.29 -3.57 16 17 C 0.12 2.39 11.27 83.85 0.95 3.34 16 18 N -0.34 -6.62 3.69 -347.10 -1.28 -7.90 16 19 C 0.15 1.32 6.82 86.38 0.59 1.91 16 20 C -0.19 -2.23 5.93 -10.80 -0.06 -2.30 16 21 C -0.18 -1.59 10.18 30.59 0.31 -1.28 16 22 C -0.15 -1.01 10.25 30.59 0.31 -0.70 16 23 N -0.09 -2.49 13.48 37.02 0.50 -1.99 16 24 N -0.23 -7.71 12.04 -50.00 -0.60 -8.32 16 25 C 0.09 3.23 4.23 32.06 0.14 3.37 16 26 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 27 O -0.56 -18.48 12.63 -148.98 -1.88 -20.37 16 28 C 0.13 6.55 5.62 86.93 0.49 7.04 16 29 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 30 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.02 0.77 8.05 -2.39 -0.02 0.75 16 32 H 0.41 16.19 7.88 -92.71 -0.73 15.46 16 33 H 0.24 2.92 8.06 -2.91 -0.02 2.89 16 34 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.14 0.23 7.82 -2.39 -0.02 0.21 16 36 H 0.09 1.63 7.94 -2.39 -0.02 1.61 16 37 H 0.12 0.62 8.03 -2.38 -0.02 0.60 16 38 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 41 H 0.40 9.83 9.12 -74.06 -0.68 9.16 16 42 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 43 H 0.09 4.61 5.86 -2.39 -0.01 4.60 16 Total: -1.00 -76.66 366.13 -0.12 -76.78 By element: Atomic # 1 Polarization: 27.68 SS G_CDS: -0.35 Total: 27.34 kcal Atomic # 6 Polarization: 20.39 SS G_CDS: 5.76 Total: 26.15 kcal Atomic # 7 Polarization: -130.75 SS G_CDS: -5.62 Total: -136.37 kcal Atomic # 8 Polarization: -39.92 SS G_CDS: -1.95 Total: -41.87 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -76.66 -0.12 -76.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083895718.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.851 kcal (2) G-P(sol) polarization free energy of solvation -76.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds