Wall clock time and date at job start Fri Apr 10 2020 18:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50693 * 120.00358 * 2 1 4 4 N 1.46506 * 109.46947 * 125.00159 * 3 2 1 5 5 C 1.34811 * 126.59357 * 125.00453 * 4 3 2 6 6 C 1.36592 * 106.84145 * 180.02562 * 5 4 3 7 7 C 1.47521 * 125.77061 * 179.97438 * 6 5 4 8 8 O 1.21592 * 120.00339 * 359.97438 * 7 6 5 9 9 N 1.34781 * 119.99997 * 179.97438 * 7 6 5 10 10 C 1.46499 * 119.99985 * 179.97438 * 9 7 6 11 11 H 1.08996 * 109.46208 * 324.97375 * 10 9 7 12 12 C 1.53044 * 109.46007 * 84.93549 * 10 9 7 13 13 C 1.52755 * 109.38132 * 181.25927 * 12 10 9 14 14 N 1.46923 * 109.00900 * 305.58408 * 13 12 10 15 15 C 1.36943 * 120.62930 * 233.58508 * 14 13 12 16 16 H 1.08004 * 119.99477 * 152.17479 * 15 14 13 17 17 C 1.38811 * 119.99955 * 332.17173 * 15 14 13 18 18 N 1.31614 * 120.00254 * 342.76805 * 17 15 14 19 19 Si 1.86800 * 119.99811 * 162.76720 * 17 15 14 20 20 H 1.48500 * 109.47142 * 179.97438 * 19 17 15 21 21 H 1.48496 * 109.47443 * 300.00287 * 19 17 15 22 22 H 1.48507 * 109.46844 * 60.00261 * 19 17 15 23 23 C 1.46927 * 118.73893 * 53.31139 * 14 13 12 24 24 C 1.53046 * 109.45791 * 204.99746 * 10 9 7 25 25 H 1.09004 * 109.49497 * 58.66620 * 24 10 9 26 26 O 1.42895 * 109.52575 * 298.58207 * 24 10 9 27 27 N 1.34400 * 108.45922 * 0.24050 * 6 5 4 28 28 N 1.28764 * 109.52089 * 359.58709 * 27 6 5 29 29 H 1.08007 * 119.99484 * 359.97438 * 1 2 3 30 30 H 1.07999 * 120.00544 * 179.97438 * 1 2 3 31 31 H 1.08001 * 119.99092 * 180.02562 * 2 1 3 32 32 H 1.09005 * 109.46971 * 5.00730 * 3 2 1 33 33 H 1.08992 * 109.47826 * 245.00632 * 3 2 1 34 34 H 1.08002 * 126.57794 * 359.97438 * 5 4 3 35 35 H 0.97006 * 119.99849 * 359.97438 * 9 7 6 36 36 H 1.09007 * 109.49256 * 301.33300 * 12 10 9 37 37 H 1.08998 * 109.49776 * 61.39965 * 12 10 9 38 38 H 1.09005 * 109.50719 * 185.70148 * 13 12 10 39 39 H 1.09006 * 109.43430 * 65.42411 * 13 12 10 40 40 H 0.97000 * 119.99965 * 179.97438 * 18 17 15 41 41 H 1.09004 * 109.58525 * 66.43417 * 23 14 13 42 42 H 1.08995 * 109.58430 * 186.71314 * 23 14 13 43 43 H 0.96706 * 113.99955 * 180.14000 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9939 1.3317 1.1315 5 6 4.3231 1.5495 1.0741 6 6 4.7903 1.4856 2.3560 7 6 6.1943 1.6638 2.7720 8 8 7.0513 1.8890 1.9393 9 7 6.5274 1.5769 4.0751 10 6 7.9218 1.7533 4.4881 11 1 8.5815 1.3388 3.7259 12 6 8.2175 3.2449 4.6616 13 6 9.6802 3.4285 5.0617 14 7 9.9558 2.6158 6.2542 15 6 10.5067 3.1824 7.3726 16 1 10.3075 2.7593 8.3462 17 6 11.3210 4.3004 7.2550 18 7 11.8403 4.6164 6.0876 19 14 11.6799 5.3563 8.7535 20 1 12.5686 6.4809 8.3653 21 1 10.4069 5.8952 9.2958 22 1 12.3502 4.5317 9.7910 23 6 9.6234 1.1849 6.2262 24 6 8.1562 1.0275 5.8150 25 1 7.9230 -0.0308 5.6969 26 8 7.3152 1.5917 6.8231 27 7 3.7554 1.2273 3.1737 28 7 2.6732 1.1351 2.4821 29 1 -0.5400 0.9354 0.0004 30 1 -0.5401 -0.9352 -0.0004 31 1 1.8499 -0.9354 -0.0004 32 1 1.3587 2.1316 0.0897 33 1 2.6213 1.4026 -0.9313 34 1 4.9066 1.7374 0.1849 35 1 5.8437 1.3976 4.7395 36 1 8.0278 3.7649 3.7225 37 1 7.5749 3.6549 5.4407 38 1 9.8676 4.4791 5.2841 39 1 10.3234 3.1059 4.2429 40 1 12.4090 5.3979 6.0054 41 1 10.2620 0.6755 5.5044 42 1 9.7758 0.7550 7.2161 43 1 7.4132 1.1801 7.6927 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090638330.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:59 Heat of formation + Delta-G solvation = 62.470863 kcal Electronic energy + Delta-G solvation = -26828.763341 eV Core-core repulsion = 22912.848917 eV Total energy + Delta-G solvation = -3915.914424 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.34732 -39.52393 -37.85232 -36.38432 -34.86226 -34.26193 -33.14209 -31.84690 -31.01071 -29.82055 -28.70727 -27.49168 -25.25299 -23.55646 -22.58740 -22.23248 -21.67049 -20.82499 -20.03807 -19.43698 -18.17697 -17.10722 -16.34923 -16.25720 -16.06965 -15.72661 -15.67628 -14.81361 -14.69357 -14.57986 -14.28757 -14.05826 -13.82151 -13.63867 -13.16885 -12.95825 -12.72811 -12.31442 -12.05487 -12.03037 -11.95830 -11.47837 -11.16904 -10.97665 -10.79134 -10.67800 -10.66386 -10.25348 -10.20649 -10.18722 -9.99515 -9.93608 -9.58253 -9.41915 -9.26479 -8.61597 -8.34829 -6.62676 -5.74070 -3.15965 0.95249 1.28439 1.68044 2.09964 3.33051 3.42206 3.43201 3.48153 3.49881 3.96136 4.08961 4.17801 4.43569 4.52062 4.62773 4.76809 4.83701 4.88147 5.12306 5.23527 5.31442 5.43104 5.45182 5.65059 5.66254 5.82329 5.89460 5.93843 6.02194 6.13363 6.30384 6.45394 6.54969 6.63367 6.69958 6.88434 6.98910 7.46362 7.65777 7.73330 7.83057 7.92956 8.18059 8.41650 8.49312 9.24473 9.87468 10.43669 11.34437 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.032208 B = 0.002422 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.151057 B =11559.834301 C =11768.216780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.181 4.181 3 C 0.151 3.849 4 N -0.362 5.362 5 C 0.090 3.910 6 C -0.095 4.095 7 C 0.598 3.402 8 O -0.542 6.542 9 N -0.701 5.701 10 C 0.162 3.838 11 H 0.092 0.908 12 C -0.144 4.144 13 C 0.174 3.826 14 N -0.582 5.582 15 C -0.248 4.248 16 H 0.064 0.936 17 C 0.001 3.999 18 N -0.902 5.902 19 Si 0.903 3.097 20 H -0.291 1.291 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.119 3.881 24 C 0.081 3.919 25 H 0.046 0.954 26 O -0.553 6.553 27 N -0.204 5.204 28 N -0.062 5.062 29 H 0.103 0.897 30 H 0.108 0.892 31 H 0.118 0.882 32 H 0.102 0.898 33 H 0.114 0.886 34 H 0.205 0.795 35 H 0.409 0.591 36 H 0.052 0.948 37 H 0.067 0.933 38 H 0.090 0.910 39 H 0.019 0.981 40 H 0.254 0.746 41 H 0.027 0.973 42 H 0.061 0.939 43 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.293 -9.378 -13.081 25.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.200 4.200 3 C 0.031 3.969 4 N -0.147 5.147 5 C -0.067 4.067 6 C -0.234 4.234 7 C 0.381 3.619 8 O -0.419 6.419 9 N -0.350 5.350 10 C 0.058 3.942 11 H 0.110 0.890 12 C -0.184 4.184 13 C 0.048 3.952 14 N -0.304 5.304 15 C -0.378 4.378 16 H 0.081 0.919 17 C -0.197 4.197 18 N -0.546 5.546 19 Si 0.733 3.267 20 H -0.217 1.217 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.009 4.009 24 C 0.020 3.980 25 H 0.064 0.936 26 O -0.358 6.358 27 N -0.078 5.078 28 N -0.042 5.042 29 H 0.121 0.879 30 H 0.126 0.874 31 H 0.136 0.864 32 H 0.120 0.880 33 H 0.132 0.868 34 H 0.222 0.778 35 H 0.245 0.755 36 H 0.071 0.929 37 H 0.085 0.915 38 H 0.108 0.892 39 H 0.038 0.962 40 H 0.064 0.936 41 H 0.045 0.955 42 H 0.080 0.920 43 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -20.842 -8.967 -13.229 26.264 hybrid contribution 0.706 0.306 0.598 0.975 sum -20.135 -8.660 -12.631 25.298 Atomic orbital electron populations 1.24002 0.95467 1.02854 0.96319 1.22872 0.96377 0.97409 1.03350 1.21096 0.91968 0.98166 0.85673 1.50537 1.06640 1.48481 1.09083 1.23414 0.84527 0.97945 1.00790 1.21627 0.95690 1.15683 0.90444 1.16791 0.84687 0.77146 0.83234 1.90813 1.49143 1.50132 1.51816 1.46012 1.11386 1.70594 1.07051 1.21084 0.80838 0.98072 0.94157 0.88965 1.22432 1.01850 0.93576 1.00545 1.20693 0.88323 0.98496 0.87724 1.43891 1.71219 1.01538 1.13746 1.19075 1.22384 1.10568 0.85778 0.91856 1.25026 0.96958 1.01044 0.96693 1.70025 1.33771 1.27623 1.23214 0.86362 0.77697 0.80173 0.82456 1.21712 1.21037 1.20986 1.21540 0.91551 0.88388 0.99397 1.22622 0.93324 0.94154 0.87901 0.93604 1.86464 1.63893 1.64243 1.21211 1.74674 0.96440 1.09793 1.26867 1.82002 1.16962 1.21957 0.83320 0.87877 0.87374 0.86429 0.88014 0.86805 0.77826 0.75549 0.92932 0.91474 0.89153 0.96248 0.93578 0.95496 0.92009 0.78124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 14.32 29.01 0.42 -0.20 16 2 C -0.18 -0.92 9.72 -36.03 -0.35 -1.27 16 3 C 0.15 0.73 6.98 -5.19 -0.04 0.69 16 4 N -0.36 -3.36 3.68 -62.24 -0.23 -3.59 16 5 C 0.09 0.92 11.27 -16.84 -0.19 0.73 16 6 C -0.10 -1.32 6.99 -83.55 -0.58 -1.90 16 7 C 0.60 9.82 7.78 -12.47 -0.10 9.72 16 8 O -0.54 -10.17 16.53 5.28 0.09 -10.08 16 9 N -0.70 -11.57 5.05 -54.81 -0.28 -11.84 16 10 C 0.16 2.99 2.20 -67.88 -0.15 2.84 16 11 H 0.09 1.79 7.58 -51.93 -0.39 1.40 16 12 C -0.14 -3.05 5.50 -26.83 -0.15 -3.19 16 13 C 0.17 4.31 5.28 -3.94 -0.02 4.29 16 14 N -0.58 -14.51 2.94 -172.58 -0.51 -15.02 16 15 C -0.25 -6.79 9.58 -15.06 -0.14 -6.93 16 16 H 0.06 1.68 7.89 -52.48 -0.41 1.27 16 17 C 0.00 0.04 4.91 -17.43 -0.09 -0.05 16 18 N -0.90 -26.49 11.19 55.49 0.62 -25.87 16 19 Si 0.90 21.95 29.59 -169.99 -5.03 16.92 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 23 C 0.12 2.41 6.16 -3.71 -0.02 2.39 16 24 C 0.08 1.40 3.38 -26.61 -0.09 1.31 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 26 O -0.55 -9.51 12.09 -35.23 -0.43 -9.93 16 27 N -0.20 -2.94 12.04 32.84 0.40 -2.54 16 28 N -0.06 -0.80 13.63 60.35 0.82 0.03 16 29 H 0.10 0.32 7.84 -52.48 -0.41 -0.09 16 30 H 0.11 0.36 8.06 -52.49 -0.42 -0.06 16 31 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 32 H 0.10 0.37 7.79 -51.93 -0.40 -0.03 16 33 H 0.11 0.22 8.08 -51.93 -0.42 -0.20 16 34 H 0.21 1.43 8.06 -52.49 -0.42 1.01 16 35 H 0.41 6.44 7.94 -40.82 -0.32 6.11 16 36 H 0.05 1.10 8.14 -51.92 -0.42 0.68 16 37 H 0.07 1.51 7.61 -51.93 -0.40 1.11 16 38 H 0.09 2.51 6.04 -51.93 -0.31 2.19 16 39 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 41 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 1.18 7.93 -51.93 -0.41 0.76 16 43 H 0.37 5.08 9.08 45.56 0.41 5.49 16 LS Contribution 364.97 15.07 5.50 5.50 Total: -1.00 -34.63 364.97 -5.71 -40.35 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -5.17 Total: 7.66 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: -1.50 Total: 8.42 kcal Atomic # 7 Polarization: -59.66 SS G_CDS: 0.83 Total: -58.84 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.34 Total: -20.02 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.63 -5.71 -40.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090638330.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.818 kcal (2) G-P(sol) polarization free energy of solvation -34.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds