Wall clock time and date at job start Fri Apr 10 2020 18:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50693 * 120.00288 * 2 1 4 4 N 1.46505 * 109.47326 * 125.00417 * 3 2 1 5 5 C 1.34807 * 126.59522 * 124.99959 * 4 3 2 6 6 C 1.36594 * 106.83969 * 180.02562 * 5 4 3 7 7 C 1.47523 * 125.77638 * 179.97438 * 6 5 4 8 8 O 1.21601 * 119.99555 * 0.02562 * 7 6 5 9 9 N 1.34771 * 120.00243 * 180.02562 * 7 6 5 10 10 C 1.46501 * 119.99939 * 180.02562 * 9 7 6 11 11 H 1.09003 * 109.45206 * 35.02793 * 10 9 7 12 12 C 1.53045 * 109.48356 * 275.08449 * 10 9 7 13 13 C 1.53194 * 109.33832 * 178.64710 * 12 10 9 14 14 N 1.46925 * 108.77556 * 54.61610 * 13 12 10 15 15 C 1.36939 * 120.62733 * 126.41882 * 14 13 12 16 16 H 1.07999 * 119.99732 * 207.66546 * 15 14 13 17 17 C 1.38808 * 120.00366 * 27.65892 * 15 14 13 18 18 N 1.31620 * 119.99948 * 17.36594 * 17 15 14 19 19 Si 1.86801 * 120.00142 * 197.37364 * 17 15 14 20 20 H 1.48503 * 109.47351 * 89.99858 * 19 17 15 21 21 H 1.48504 * 109.47193 * 209.99976 * 19 17 15 22 22 H 1.48504 * 109.46880 * 329.99851 * 19 17 15 23 23 C 1.46927 * 118.74262 * 306.39085 * 14 13 12 24 24 C 1.53038 * 109.46410 * 155.00050 * 10 9 7 25 25 H 1.09001 * 109.49931 * 61.39924 * 24 10 9 26 26 O 1.42901 * 109.49537 * 301.33362 * 24 10 9 27 27 N 1.34402 * 108.45897 * 0.24409 * 6 5 4 28 28 N 1.28769 * 109.52217 * 359.58811 * 27 6 5 29 29 H 1.08002 * 119.99710 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.00315 * 179.97438 * 1 2 3 31 31 H 1.08002 * 119.99710 * 180.02562 * 2 1 3 32 32 H 1.09004 * 109.47358 * 5.00032 * 3 2 1 33 33 H 1.09009 * 109.47430 * 245.00263 * 3 2 1 34 34 H 1.08002 * 126.58169 * 0.02562 * 5 4 3 35 35 H 0.96996 * 120.00196 * 359.97438 * 9 7 6 36 36 H 1.08994 * 109.49616 * 58.67741 * 12 10 9 37 37 H 1.08995 * 109.49667 * 298.61294 * 12 10 9 38 38 H 1.09008 * 109.58744 * 294.82878 * 13 12 10 39 39 H 1.09002 * 109.58660 * 174.40659 * 13 12 10 40 40 H 0.97003 * 119.99832 * 179.97438 * 18 17 15 41 41 H 1.08999 * 109.58634 * 293.82580 * 23 14 13 42 42 H 1.08991 * 109.70371 * 173.46808 * 23 14 13 43 43 H 0.96694 * 114.00500 * 180.02562 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9939 1.3318 1.1314 5 6 4.3230 1.5495 1.0739 6 6 4.7902 1.4858 2.3559 7 6 6.1943 1.6639 2.7720 8 8 7.0511 1.8900 1.9393 9 7 6.5274 1.5761 4.0749 10 6 7.9217 1.7536 4.4881 11 1 8.3972 2.4990 3.8506 12 6 8.6661 0.4227 4.3576 13 6 10.1316 0.6198 4.7582 14 7 10.1790 1.2083 6.1035 15 6 10.9137 0.6188 7.0974 16 1 10.6257 0.7470 8.1304 17 6 12.0286 -0.1437 6.7773 18 7 12.5833 -0.0318 5.5890 19 14 12.7415 -1.3289 8.0330 20 1 12.0970 -2.6580 7.8809 21 1 14.2046 -1.4603 7.8147 22 1 12.4899 -0.8103 9.4016 23 6 9.4237 2.4418 6.3622 24 6 7.9663 2.2243 5.9436 25 1 7.5127 1.4683 6.5846 26 8 7.2455 3.4517 6.0702 27 7 3.7554 1.2274 3.1736 28 7 2.6731 1.1351 2.4821 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3587 2.1316 0.0896 33 1 2.6214 1.4026 -0.9315 34 1 4.9065 1.7381 0.1849 35 1 5.8439 1.3962 4.7392 36 1 8.6145 0.0768 3.3253 37 1 8.2062 -0.3171 5.0127 38 1 10.6174 1.2899 4.0488 39 1 10.6419 -0.3434 4.7624 40 1 13.3626 -0.5644 5.3654 41 1 9.8517 3.2604 5.7836 42 1 9.4669 2.6833 7.4241 43 1 7.2325 3.8094 6.9684 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090638333.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:07 Heat of formation + Delta-G solvation = 59.615823 kcal Electronic energy + Delta-G solvation = -26721.448559 eV Core-core repulsion = 22805.410331 eV Total energy + Delta-G solvation = -3916.038228 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.33154 -39.50511 -37.80561 -36.36969 -35.34963 -34.28507 -33.13414 -31.94906 -31.01962 -29.83890 -28.51718 -27.47767 -25.29834 -23.57825 -22.57859 -22.28481 -21.65937 -20.82053 -20.07569 -19.51033 -18.19040 -17.06541 -16.56945 -16.26703 -16.19716 -15.89519 -15.70302 -14.88321 -14.73315 -14.61631 -14.25977 -13.87338 -13.86208 -13.55031 -13.17310 -12.93369 -12.71869 -12.31573 -12.22417 -12.04931 -11.98632 -11.53733 -11.46452 -11.07951 -10.86104 -10.65841 -10.64255 -10.29619 -10.22160 -10.18666 -9.98878 -9.88440 -9.67173 -9.43221 -9.40397 -8.69055 -8.41309 -6.74668 -5.82251 -3.26059 0.96690 1.29999 1.70014 2.11373 3.34132 3.38121 3.43927 3.45055 3.45414 3.97266 4.10217 4.19033 4.40956 4.44883 4.55728 4.67188 4.84626 4.87499 5.13601 5.25208 5.34371 5.35983 5.51432 5.62070 5.66621 5.82536 5.91195 5.95441 6.02895 6.14778 6.16130 6.36672 6.52810 6.57139 6.71143 6.81422 6.90751 7.32714 7.62995 7.67313 7.76034 7.92436 7.99328 8.40457 8.43539 9.16005 9.78428 10.34301 11.26302 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.024538 B = 0.002478 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.817020 B =11298.418928 C =11653.253545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.181 4.181 3 C 0.152 3.848 4 N -0.362 5.362 5 C 0.089 3.911 6 C -0.094 4.094 7 C 0.601 3.399 8 O -0.542 6.542 9 N -0.698 5.698 10 C 0.163 3.837 11 H 0.090 0.910 12 C -0.147 4.147 13 C 0.171 3.829 14 N -0.588 5.588 15 C -0.258 4.258 16 H 0.067 0.933 17 C 0.004 3.996 18 N -0.899 5.899 19 Si 0.905 3.095 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.279 1.279 23 C 0.122 3.878 24 C 0.080 3.920 25 H 0.057 0.943 26 O -0.570 6.570 27 N -0.205 5.205 28 N -0.063 5.063 29 H 0.103 0.897 30 H 0.108 0.892 31 H 0.118 0.882 32 H 0.101 0.899 33 H 0.114 0.886 34 H 0.205 0.795 35 H 0.404 0.596 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.024 0.976 39 H 0.094 0.906 40 H 0.255 0.745 41 H 0.029 0.971 42 H 0.060 0.940 43 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.156 2.568 -11.207 24.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.200 4.200 3 C 0.031 3.969 4 N -0.147 5.147 5 C -0.067 4.067 6 C -0.233 4.233 7 C 0.384 3.616 8 O -0.419 6.419 9 N -0.346 5.346 10 C 0.060 3.940 11 H 0.108 0.892 12 C -0.187 4.187 13 C 0.045 3.955 14 N -0.312 5.312 15 C -0.387 4.387 16 H 0.085 0.915 17 C -0.195 4.195 18 N -0.543 5.543 19 Si 0.734 3.266 20 H -0.214 1.214 21 H -0.217 1.217 22 H -0.204 1.204 23 C -0.006 4.006 24 C 0.019 3.981 25 H 0.075 0.925 26 O -0.374 6.374 27 N -0.079 5.079 28 N -0.043 5.043 29 H 0.121 0.879 30 H 0.126 0.874 31 H 0.136 0.864 32 H 0.120 0.880 33 H 0.132 0.868 34 H 0.222 0.778 35 H 0.239 0.761 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.043 0.957 39 H 0.112 0.888 40 H 0.065 0.935 41 H 0.047 0.953 42 H 0.079 0.921 43 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -22.585 2.289 -11.518 25.456 hybrid contribution 0.816 -0.493 0.635 1.146 sum -21.769 1.796 -10.883 24.404 Atomic orbital electron populations 1.23994 0.95460 1.02834 0.96390 1.22880 0.96386 0.97443 1.03281 1.21095 0.91949 0.98148 0.85689 1.50526 1.06644 1.48502 1.09074 1.23411 0.84513 0.97972 1.00789 1.21623 0.95663 1.15567 0.90447 1.16736 0.84604 0.77041 0.83211 1.90813 1.49228 1.50148 1.51664 1.45884 1.10965 1.70654 1.07141 1.21061 0.80155 0.98649 0.94181 0.89237 1.22619 0.99970 0.95158 1.00998 1.20843 0.89448 1.00209 0.84997 1.44050 1.54684 1.23330 1.09162 1.19175 1.04760 1.26741 0.88026 0.91498 1.25068 0.95834 1.01541 0.97061 1.70039 1.21952 1.41216 1.21094 0.86262 0.78003 0.81429 0.80875 1.21364 1.21728 1.20410 1.21522 0.89413 0.90582 0.99090 1.22776 0.94516 0.85328 0.95526 0.92471 1.86488 1.76316 1.40471 1.34170 1.74659 0.96455 1.09813 1.26923 1.81995 1.16969 1.21981 0.83339 0.87902 0.87372 0.86393 0.88043 0.86810 0.77830 0.76110 0.91847 0.92239 0.95743 0.88827 0.93467 0.95285 0.92135 0.77996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.64 14.32 29.01 0.42 -0.22 16 2 C -0.18 -0.97 9.72 -36.03 -0.35 -1.32 16 3 C 0.15 0.75 6.98 -5.19 -0.04 0.71 16 4 N -0.36 -3.42 3.68 -62.24 -0.23 -3.65 16 5 C 0.09 0.94 11.27 -16.84 -0.19 0.75 16 6 C -0.09 -1.32 6.99 -83.55 -0.58 -1.90 16 7 C 0.60 10.09 7.78 -12.48 -0.10 9.99 16 8 O -0.54 -10.43 16.53 5.28 0.09 -10.34 16 9 N -0.70 -11.64 4.92 -54.81 -0.27 -11.91 16 10 C 0.16 3.05 2.12 -67.89 -0.14 2.91 16 11 H 0.09 1.88 7.58 -51.93 -0.39 1.48 16 12 C -0.15 -2.96 5.65 -26.61 -0.15 -3.11 16 13 C 0.17 4.13 5.31 -3.71 -0.02 4.11 16 14 N -0.59 -14.53 2.99 -172.32 -0.52 -15.04 16 15 C -0.26 -6.93 9.59 -15.06 -0.14 -7.07 16 16 H 0.07 1.75 7.89 -52.49 -0.41 1.34 16 17 C 0.00 0.11 4.91 -17.43 -0.09 0.03 16 18 N -0.90 -25.93 11.19 55.49 0.62 -25.31 16 19 Si 0.90 21.46 29.59 -169.99 -5.03 16.43 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 23 C 0.12 2.51 6.14 -3.71 -0.02 2.48 16 24 C 0.08 1.41 3.14 -26.61 -0.08 1.32 16 25 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 26 O -0.57 -9.00 13.16 -35.23 -0.46 -9.46 16 27 N -0.20 -2.97 12.04 32.85 0.40 -2.57 16 28 N -0.06 -0.81 13.63 60.35 0.82 0.02 16 29 H 0.10 0.33 7.84 -52.49 -0.41 -0.09 16 30 H 0.11 0.39 8.06 -52.49 -0.42 -0.04 16 31 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 32 H 0.10 0.37 7.79 -51.93 -0.40 -0.04 16 33 H 0.11 0.24 8.08 -51.92 -0.42 -0.18 16 34 H 0.20 1.48 8.06 -52.49 -0.42 1.06 16 35 H 0.40 6.24 8.29 -40.82 -0.34 5.90 16 36 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.02 0.63 8.14 -51.92 -0.42 0.20 16 39 H 0.09 2.50 6.04 -51.93 -0.31 2.19 16 40 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 41 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 1.17 7.94 -51.93 -0.41 0.76 16 43 H 0.37 4.28 9.08 45.56 0.41 4.69 16 LS Contribution 366.68 15.07 5.53 5.53 Total: -1.00 -34.21 366.68 -5.76 -39.96 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -5.21 Total: 7.68 kcal Atomic # 6 Polarization: 10.16 SS G_CDS: -1.49 Total: 8.67 kcal Atomic # 7 Polarization: -59.29 SS G_CDS: 0.82 Total: -58.47 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -0.38 Total: -19.80 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.21 -5.76 -39.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090638333.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.580 kcal (2) G-P(sol) polarization free energy of solvation -34.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds