Wall clock time and date at job start Fri Apr 10 2020 18:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50693 * 120.00288 * 2 1 4 4 N 1.46505 * 109.47326 * 125.00417 * 3 2 1 5 5 C 1.34807 * 126.59522 * 124.99959 * 4 3 2 6 6 C 1.36594 * 106.83969 * 180.02562 * 5 4 3 7 7 C 1.47523 * 125.77638 * 179.97438 * 6 5 4 8 8 O 1.21601 * 119.99555 * 0.02562 * 7 6 5 9 9 N 1.34771 * 120.00243 * 180.02562 * 7 6 5 10 10 C 1.46501 * 119.99939 * 180.02562 * 9 7 6 11 11 H 1.09003 * 109.45206 * 35.02793 * 10 9 7 12 12 C 1.53045 * 109.48356 * 275.08449 * 10 9 7 13 13 C 1.53194 * 109.33832 * 178.64710 * 12 10 9 14 14 N 1.46925 * 108.77556 * 54.61610 * 13 12 10 15 15 C 1.36939 * 120.62733 * 126.41882 * 14 13 12 16 16 H 1.07999 * 119.99732 * 207.66546 * 15 14 13 17 17 C 1.38808 * 120.00366 * 27.65892 * 15 14 13 18 18 N 1.31620 * 119.99948 * 17.36594 * 17 15 14 19 19 Si 1.86801 * 120.00142 * 197.37364 * 17 15 14 20 20 H 1.48503 * 109.47351 * 89.99858 * 19 17 15 21 21 H 1.48504 * 109.47193 * 209.99976 * 19 17 15 22 22 H 1.48504 * 109.46880 * 329.99851 * 19 17 15 23 23 C 1.46927 * 118.74262 * 306.39085 * 14 13 12 24 24 C 1.53038 * 109.46410 * 155.00050 * 10 9 7 25 25 H 1.09001 * 109.49931 * 61.39924 * 24 10 9 26 26 O 1.42901 * 109.49537 * 301.33362 * 24 10 9 27 27 N 1.34402 * 108.45897 * 0.24409 * 6 5 4 28 28 N 1.28769 * 109.52217 * 359.58811 * 27 6 5 29 29 H 1.08002 * 119.99710 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.00315 * 179.97438 * 1 2 3 31 31 H 1.08002 * 119.99710 * 180.02562 * 2 1 3 32 32 H 1.09004 * 109.47358 * 5.00032 * 3 2 1 33 33 H 1.09009 * 109.47430 * 245.00263 * 3 2 1 34 34 H 1.08002 * 126.58169 * 0.02562 * 5 4 3 35 35 H 0.96996 * 120.00196 * 359.97438 * 9 7 6 36 36 H 1.08994 * 109.49616 * 58.67741 * 12 10 9 37 37 H 1.08995 * 109.49667 * 298.61294 * 12 10 9 38 38 H 1.09008 * 109.58744 * 294.82878 * 13 12 10 39 39 H 1.09002 * 109.58660 * 174.40659 * 13 12 10 40 40 H 0.97003 * 119.99832 * 179.97438 * 18 17 15 41 41 H 1.08999 * 109.58634 * 293.82580 * 23 14 13 42 42 H 1.08991 * 109.70371 * 173.46808 * 23 14 13 43 43 H 0.96694 * 114.00500 * 180.02562 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9939 1.3318 1.1314 5 6 4.3230 1.5495 1.0739 6 6 4.7902 1.4858 2.3559 7 6 6.1943 1.6639 2.7720 8 8 7.0511 1.8900 1.9393 9 7 6.5274 1.5761 4.0749 10 6 7.9217 1.7536 4.4881 11 1 8.3972 2.4990 3.8506 12 6 8.6661 0.4227 4.3576 13 6 10.1316 0.6198 4.7582 14 7 10.1790 1.2083 6.1035 15 6 10.9137 0.6188 7.0974 16 1 10.6257 0.7470 8.1304 17 6 12.0286 -0.1437 6.7773 18 7 12.5833 -0.0318 5.5890 19 14 12.7415 -1.3289 8.0330 20 1 12.0970 -2.6580 7.8809 21 1 14.2046 -1.4603 7.8147 22 1 12.4899 -0.8103 9.4016 23 6 9.4237 2.4418 6.3622 24 6 7.9663 2.2243 5.9436 25 1 7.5127 1.4683 6.5846 26 8 7.2455 3.4517 6.0702 27 7 3.7554 1.2274 3.1736 28 7 2.6731 1.1351 2.4821 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3587 2.1316 0.0896 33 1 2.6214 1.4026 -0.9315 34 1 4.9065 1.7381 0.1849 35 1 5.8439 1.3962 4.7392 36 1 8.6145 0.0768 3.3253 37 1 8.2062 -0.3171 5.0127 38 1 10.6174 1.2899 4.0488 39 1 10.6419 -0.3434 4.7624 40 1 13.3626 -0.5644 5.3654 41 1 9.8517 3.2604 5.7836 42 1 9.4669 2.6833 7.4241 43 1 7.2325 3.8094 6.9684 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090638333.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:07 Heat of formation + Delta-G solvation = 32.228169 kcal Electronic energy + Delta-G solvation = -26722.636176 eV Core-core repulsion = 22805.410331 eV Total energy + Delta-G solvation = -3917.225846 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.23532 -40.91831 -39.30826 -36.96781 -36.91748 -35.77587 -33.93136 -33.62970 -32.24405 -31.38327 -30.14213 -28.12579 -27.05316 -24.92883 -23.91044 -23.46633 -23.13430 -21.64809 -21.25819 -20.80474 -19.30802 -18.72526 -18.01606 -17.44362 -17.21009 -17.06481 -16.74148 -16.14174 -15.79751 -15.74818 -15.62808 -15.55393 -15.01886 -14.93823 -14.57537 -14.40305 -13.86578 -13.59707 -13.51432 -13.26508 -13.07131 -12.96617 -12.72464 -12.51197 -12.37884 -12.30189 -12.10396 -12.03541 -11.87655 -11.45729 -11.37432 -11.16735 -11.00897 -10.59108 -10.55426 -10.36424 -9.99348 -8.75476 -7.88929 -5.35906 0.13893 0.61427 0.78567 1.49212 1.51004 1.58709 1.59536 2.09651 2.23963 2.50287 3.10584 3.19892 3.28391 3.42764 3.64470 3.78323 3.82369 3.89480 3.96694 4.07894 4.11704 4.22750 4.40152 4.44072 4.54173 4.54508 4.65617 4.74751 4.86757 4.94033 4.95309 5.03371 5.13749 5.38970 5.39855 5.44882 5.57279 5.62067 5.66925 5.67699 6.35401 6.43537 6.88923 6.91060 7.11119 7.14994 7.79372 8.32025 9.18400 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.024538 B = 0.002478 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.817020 B =11298.418928 C =11653.253545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.199 4.199 3 C 0.142 3.858 4 N -0.346 5.346 5 C 0.111 3.889 6 C -0.123 4.123 7 C 0.601 3.399 8 O -0.572 6.572 9 N -0.693 5.693 10 C 0.171 3.829 11 H 0.065 0.935 12 C -0.130 4.130 13 C 0.180 3.820 14 N -0.604 5.604 15 C -0.264 4.264 16 H 0.076 0.924 17 C -0.051 4.051 18 N -0.935 5.935 19 Si 0.970 3.030 20 H -0.285 1.285 21 H -0.297 1.297 22 H -0.265 1.265 23 C 0.120 3.880 24 C 0.100 3.900 25 H 0.069 0.931 26 O -0.571 6.571 27 N -0.226 5.226 28 N -0.081 5.081 29 H 0.117 0.883 30 H 0.112 0.888 31 H 0.107 0.893 32 H 0.120 0.880 33 H 0.148 0.852 34 H 0.237 0.763 35 H 0.412 0.588 36 H 0.062 0.938 37 H 0.065 0.935 38 H -0.003 1.003 39 H 0.064 0.936 40 H 0.251 0.749 41 H 0.016 0.984 42 H 0.076 0.924 43 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.635 2.825 -11.277 27.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.218 4.218 3 C 0.024 3.976 4 N -0.130 5.130 5 C -0.047 4.047 6 C -0.263 4.263 7 C 0.387 3.613 8 O -0.451 6.451 9 N -0.342 5.342 10 C 0.066 3.934 11 H 0.083 0.917 12 C -0.170 4.170 13 C 0.054 3.946 14 N -0.329 5.329 15 C -0.394 4.394 16 H 0.093 0.907 17 C -0.247 4.247 18 N -0.581 5.581 19 Si 0.798 3.202 20 H -0.212 1.212 21 H -0.224 1.224 22 H -0.190 1.190 23 C -0.007 4.007 24 C 0.039 3.961 25 H 0.087 0.913 26 O -0.378 6.378 27 N -0.099 5.099 28 N -0.062 5.062 29 H 0.135 0.865 30 H 0.131 0.869 31 H 0.125 0.875 32 H 0.138 0.862 33 H 0.166 0.834 34 H 0.254 0.746 35 H 0.248 0.752 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.015 0.985 39 H 0.082 0.918 40 H 0.060 0.940 41 H 0.034 0.966 42 H 0.094 0.906 43 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -25.148 2.567 -11.557 27.795 hybrid contribution 1.458 -0.499 0.558 1.639 sum -23.691 2.068 -10.999 26.201 Atomic orbital electron populations 1.24206 0.95270 1.03800 0.94649 1.22870 0.96793 0.97270 1.04836 1.21619 0.92166 0.98547 0.85301 1.50842 1.06910 1.46367 1.08931 1.23857 0.84881 0.95495 1.00484 1.21371 0.94346 1.18536 0.92023 1.17067 0.85625 0.75972 0.82679 1.90791 1.50499 1.51556 1.52289 1.45709 1.10019 1.70805 1.07656 1.20729 0.81119 0.96886 0.94643 0.91710 1.22346 0.97454 0.96361 1.00836 1.20568 0.91451 0.97915 0.84696 1.44259 1.55008 1.24833 1.08751 1.19556 1.04577 1.26409 0.88848 0.90666 1.25865 0.96577 1.03342 0.98880 1.70201 1.22490 1.42288 1.23091 0.85223 0.76581 0.79165 0.79189 1.21214 1.22414 1.18961 1.21666 0.90603 0.88530 0.99890 1.22334 0.92645 0.86467 0.94654 0.91299 1.86461 1.75454 1.39540 1.36356 1.74624 0.96805 1.10578 1.27911 1.81901 1.16627 1.22612 0.85033 0.86515 0.86932 0.87474 0.86186 0.83397 0.74638 0.75163 0.91983 0.91623 0.98518 0.91781 0.94005 0.96622 0.90608 0.75428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 14.32 67.78 0.97 0.08 16 2 C -0.20 -1.68 9.72 25.64 0.25 -1.44 16 3 C 0.14 0.95 6.98 85.63 0.60 1.54 16 4 N -0.35 -5.67 3.68 -350.82 -1.29 -6.97 16 5 C 0.11 2.06 11.27 83.85 0.95 3.01 16 6 C -0.12 -3.33 6.99 40.82 0.29 -3.05 16 7 C 0.60 19.96 7.78 86.69 0.67 20.63 16 8 O -0.57 -22.06 16.53 -4.03 -0.07 -22.13 16 9 N -0.69 -22.76 4.92 -445.57 -2.19 -24.95 16 10 C 0.17 6.40 2.12 45.02 0.10 6.49 16 11 H 0.06 2.78 7.58 -2.39 -0.02 2.76 16 12 C -0.13 -5.31 5.65 30.67 0.17 -5.14 16 13 C 0.18 9.01 5.31 86.36 0.46 9.47 16 14 N -0.60 -30.18 2.99 -699.10 -2.09 -32.28 16 15 C -0.26 -14.22 9.59 84.03 0.81 -13.41 16 16 H 0.08 3.86 7.89 -2.91 -0.02 3.83 16 17 C -0.05 -2.83 4.91 84.86 0.42 -2.42 16 18 N -0.94 -55.59 11.19 21.65 0.24 -55.35 16 19 Si 0.97 44.44 29.59 68.60 2.03 46.47 16 20 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 21 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 22 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 23 C 0.12 4.88 6.14 86.36 0.53 5.41 16 24 C 0.10 3.43 3.14 30.67 0.10 3.52 16 25 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 26 O -0.57 -16.85 13.16 -148.98 -1.96 -18.81 16 27 N -0.23 -6.32 12.04 -50.00 -0.60 -6.92 16 28 N -0.08 -1.98 13.63 37.02 0.50 -1.47 16 29 H 0.12 0.40 7.84 -2.91 -0.02 0.37 16 30 H 0.11 0.59 8.06 -2.91 -0.02 0.57 16 31 H 0.11 1.13 8.06 -2.91 -0.02 1.11 16 32 H 0.12 0.43 7.79 -2.39 -0.02 0.41 16 33 H 0.15 0.00 8.08 -2.38 -0.02 -0.02 16 34 H 0.24 2.67 8.06 -2.91 -0.02 2.64 16 35 H 0.41 12.30 8.29 -92.71 -0.77 11.53 16 36 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 37 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 38 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 16 39 H 0.06 3.58 6.04 -2.39 -0.01 3.56 16 40 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 41 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.08 2.82 7.94 -2.39 -0.02 2.80 16 43 H 0.40 7.93 9.08 -74.06 -0.67 7.25 16 Total: -1.00 -75.89 366.68 0.48 -75.42 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: -0.39 Total: 22.28 kcal Atomic # 6 Polarization: 18.42 SS G_CDS: 6.30 Total: 24.72 kcal Atomic # 7 Polarization: -122.50 SS G_CDS: -5.43 Total: -127.93 kcal Atomic # 8 Polarization: -38.92 SS G_CDS: -2.03 Total: -40.94 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -75.89 0.48 -75.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090638333.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.644 kcal (2) G-P(sol) polarization free energy of solvation -75.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds