Wall clock time and date at job start Fri Apr 10 2020 18:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 120.00421 * 2 1 4 4 H 1.48501 * 109.47100 * 355.21962 * 3 2 1 5 5 H 1.48497 * 109.47163 * 115.21731 * 3 2 1 6 6 H 1.48491 * 109.47269 * 235.22007 * 3 2 1 7 7 C 1.38809 * 119.99562 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00353 * 353.91458 * 7 2 1 9 9 N 1.36933 * 119.99825 * 173.91975 * 7 2 1 10 10 C 1.47064 * 136.05913 * 7.28686 * 9 7 2 11 11 C 1.53761 * 87.89023 * 152.96584 * 10 9 7 12 12 N 1.46506 * 114.39030 * 272.67669 * 11 10 9 13 13 C 1.35312 * 125.87097 * 8.58534 * 12 11 10 14 14 C 1.35347 * 106.17489 * 179.97438 * 13 12 11 15 15 C 1.50703 * 126.75233 * 179.97438 * 14 13 12 16 16 N 1.46502 * 109.47187 * 94.99968 * 15 14 13 17 17 C 1.34773 * 119.99795 * 180.02562 * 16 15 14 18 18 O 1.21280 * 120.00018 * 359.97438 * 17 16 15 19 19 C 1.50704 * 119.99544 * 180.02562 * 17 16 15 20 20 H 1.08992 * 110.43301 * 300.69447 * 19 17 16 21 21 C 1.54818 * 110.48362 * 178.15139 * 19 17 16 22 22 C 1.55229 * 101.98389 * 220.51678 * 21 19 17 23 23 O 1.44379 * 103.56783 * 36.88478 * 22 21 19 24 24 C 1.43751 * 106.97418 * 320.00992 * 23 22 21 25 25 N 1.33770 * 106.49963 * 0.02562 * 14 13 12 26 26 N 1.28635 * 108.88214 * 359.73074 * 25 14 13 27 27 C 1.47072 * 136.05483 * 187.65697 * 9 7 2 28 28 H 0.96997 * 120.00374 * 178.88405 * 1 2 3 29 29 H 1.09007 * 113.46988 * 267.69330 * 10 9 7 30 30 H 1.08999 * 113.46749 * 38.13830 * 10 9 7 31 31 H 1.08994 * 114.09041 * 139.78548 * 11 10 9 32 32 H 1.08001 * 126.90772 * 359.97438 * 13 12 11 33 33 H 1.08994 * 109.47429 * 215.00762 * 15 14 13 34 34 H 1.09004 * 109.46578 * 335.00418 * 15 14 13 35 35 H 0.96999 * 119.99691 * 0.02562 * 16 15 14 36 36 H 1.08999 * 110.90744 * 338.63569 * 21 19 17 37 37 H 1.08995 * 110.90587 * 102.24662 * 21 19 17 38 38 H 1.08991 * 110.51786 * 278.38681 * 22 21 19 39 39 H 1.09000 * 110.77345 * 155.49957 * 22 21 19 40 40 H 1.09001 * 109.87849 * 267.09290 * 24 23 22 41 41 H 1.08995 * 109.87671 * 145.94072 * 24 23 22 42 42 H 1.09002 * 113.47138 * 321.86074 * 27 9 7 43 43 H 1.08997 * 113.46773 * 92.24968 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2896 2.7440 -0.1167 5 1 3.0144 1.7480 1.2666 6 1 3.1894 1.6470 -1.1499 7 6 2.0102 -1.2022 0.0005 8 1 1.4747 -2.1348 0.1001 9 7 3.3737 -1.2056 -0.1251 10 6 4.4377 -0.1906 -0.1476 11 6 5.3971 -1.2663 0.3877 12 7 5.4219 -1.3824 1.8479 13 6 4.5804 -0.7621 2.7070 14 6 4.9572 -1.1477 3.9484 15 6 4.3293 -0.7281 5.2525 16 7 3.3430 -1.7300 5.6644 17 6 2.6510 -1.5636 6.8089 18 8 2.8451 -0.5846 7.4980 19 6 1.6368 -2.5945 7.2328 20 1 0.8630 -2.7020 6.4728 21 6 1.0092 -2.2091 8.5945 22 6 0.9315 -3.5825 9.3139 23 8 2.1373 -4.2548 8.8914 24 6 2.3230 -3.9484 7.4993 25 7 5.9974 -1.9738 3.7903 26 7 6.2445 -2.0963 2.5338 27 6 4.4181 -2.2257 -0.3034 28 1 -0.4850 -0.8398 -0.0164 29 1 4.6881 0.1537 -1.1511 30 1 4.2699 0.6296 0.5505 31 1 6.3898 -1.2404 -0.0616 32 1 3.7710 -0.0937 2.4531 33 1 5.1016 -0.6428 6.0169 34 1 3.8365 0.2358 5.1249 35 1 3.1881 -2.5131 5.1134 36 1 1.6551 -1.5209 9.1397 37 1 0.0155 -1.7825 8.4580 38 1 0.0500 -4.1348 8.9885 39 1 0.9237 -3.4522 10.3960 40 1 1.8647 -4.7234 6.8849 41 1 3.3870 -3.8753 7.2746 42 1 4.2338 -3.1392 0.2619 43 1 4.6626 -2.4185 -1.3479 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094277615.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:28 Heat of formation + Delta-G solvation = 88.650838 kcal Electronic energy + Delta-G solvation = -27245.181436 eV Core-core repulsion = 23330.402261 eV Total energy + Delta-G solvation = -3914.779175 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.13419 -40.44545 -39.01398 -38.49694 -35.22809 -33.38666 -32.58822 -32.22746 -31.21401 -29.54022 -28.43163 -26.72327 -25.81586 -24.16520 -23.55788 -22.36189 -21.83732 -21.20832 -20.16821 -19.71593 -17.97940 -17.70299 -17.04812 -16.73120 -16.48552 -16.06226 -15.67077 -15.20391 -15.01160 -14.88216 -14.48448 -14.29123 -14.12099 -13.92977 -13.41229 -13.30001 -13.03969 -12.72280 -12.36545 -12.23171 -11.75229 -11.69209 -11.66517 -11.56741 -11.34584 -11.13538 -10.91050 -10.81029 -10.70247 -10.27239 -9.90925 -9.73621 -9.55535 -9.44765 -9.20830 -9.12221 -9.03722 -7.53448 -6.57990 -3.54236 1.80158 2.40706 2.51303 2.54235 3.10139 3.16822 3.34071 3.38957 3.68679 4.10490 4.14392 4.31526 4.33469 4.45061 4.56780 4.66992 4.87248 4.92397 4.99393 5.03992 5.10962 5.16715 5.33031 5.36095 5.41892 5.43668 5.48244 5.61000 5.65406 5.67592 5.73037 5.77080 5.93114 5.93841 6.07290 6.08121 6.24168 6.32570 6.56351 6.67233 6.90208 7.42379 7.97316 8.12566 8.68512 8.69231 9.18483 9.98703 10.92951 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.013199 B = 0.003645 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.847611 B = 7680.061541 C = 8684.022416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.018 4.018 3 Si 1.063 2.937 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.285 1.285 7 C -0.314 4.314 8 H 0.086 0.914 9 N -0.623 5.623 10 C 0.093 3.907 11 C 0.084 3.916 12 N -0.257 5.257 13 C 0.014 3.986 14 C -0.069 4.069 15 C 0.216 3.784 16 N -0.720 5.720 17 C 0.526 3.474 18 O -0.537 6.537 19 C -0.148 4.148 20 H 0.114 0.886 21 C -0.140 4.140 22 C 0.045 3.955 23 O -0.375 6.375 24 C 0.058 3.942 25 N -0.260 5.260 26 N -0.091 5.091 27 C 0.119 3.881 28 H 0.264 0.736 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.125 0.875 32 H 0.192 0.808 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.404 0.596 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.062 0.938 39 H 0.096 0.904 40 H 0.070 0.930 41 H 0.089 0.911 42 H 0.056 0.944 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.704 -4.088 9.355 11.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.218 4.218 3 Si 0.895 3.105 4 H -0.215 1.215 5 H -0.221 1.221 6 H -0.212 1.212 7 C -0.439 4.439 8 H 0.103 0.897 9 N -0.352 5.352 10 C -0.034 4.034 11 C -0.019 4.019 12 N -0.048 5.048 13 C -0.139 4.139 14 C -0.207 4.207 15 C 0.091 3.909 16 N -0.372 5.372 17 C 0.312 3.688 18 O -0.414 6.414 19 C -0.170 4.170 20 H 0.132 0.868 21 C -0.178 4.178 22 C -0.031 4.031 23 O -0.293 6.293 24 C -0.020 4.020 25 N -0.127 5.127 26 N -0.070 5.070 27 C -0.009 4.009 28 H 0.074 0.926 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.143 0.857 32 H 0.209 0.791 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.239 0.761 36 H 0.116 0.884 37 H 0.105 0.895 38 H 0.080 0.920 39 H 0.114 0.886 40 H 0.088 0.912 41 H 0.107 0.893 42 H 0.075 0.925 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.717 -2.832 9.918 12.308 hybrid contribution -1.040 -1.204 -1.015 1.887 sum 5.677 -4.036 8.903 11.304 Atomic orbital electron populations 1.70911 1.05387 1.29318 1.50738 1.25707 0.96461 1.00794 0.98827 0.83824 0.74264 0.76487 0.75952 1.21517 1.22087 1.21171 1.20098 0.77642 0.95974 1.50229 0.89681 1.46173 1.02039 1.01149 1.85822 1.23253 0.86790 0.93477 0.99832 1.23358 1.01311 1.03108 0.74145 1.46822 1.20660 1.28988 1.08318 1.23591 0.98836 1.02624 0.88837 1.21666 0.99563 1.04318 0.95130 1.19279 0.90344 0.91229 0.90057 1.46032 1.40816 1.26236 1.24099 1.20209 0.81277 0.86921 0.80415 1.90689 1.66611 1.30813 1.53294 1.22769 0.98200 0.95301 1.00741 0.86839 1.23162 1.02370 0.98502 0.93721 1.23656 0.87879 0.91229 1.00347 1.88894 1.43699 1.72428 1.24319 1.23143 1.01477 0.93568 0.83796 1.74993 1.13944 1.15935 1.07860 1.78239 1.15520 1.15209 0.98020 1.22722 0.86290 0.93860 0.97980 0.92564 0.90543 0.91795 0.85745 0.79115 0.89678 0.89580 0.76140 0.88388 0.89538 0.91973 0.88619 0.91153 0.89275 0.92543 0.91539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.78 13.71 55.49 0.76 -26.02 16 2 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 3 Si 1.06 23.53 25.16 -169.99 -4.28 19.26 16 4 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 5 H -0.29 -5.88 6.21 56.52 0.35 -5.53 16 6 H -0.28 -5.76 6.20 56.52 0.35 -5.41 16 7 C -0.31 -7.98 11.08 -15.06 -0.17 -8.14 16 8 H 0.09 2.35 8.05 -52.49 -0.42 1.92 16 9 N -0.62 -12.97 3.42 -184.59 -0.63 -13.60 16 10 C 0.09 1.60 4.87 -8.37 -0.04 1.56 16 11 C 0.08 1.25 5.37 -67.67 -0.36 0.89 16 12 N -0.26 -4.26 3.56 -54.43 -0.19 -4.46 16 13 C 0.01 0.24 10.38 -17.05 -0.18 0.07 16 14 C -0.07 -1.08 6.61 -82.78 -0.55 -1.63 16 15 C 0.22 3.02 6.23 -5.19 -0.03 2.98 16 16 N -0.72 -9.39 5.45 -61.47 -0.33 -9.73 16 17 C 0.53 7.12 6.95 -10.98 -0.08 7.04 16 18 O -0.54 -8.95 15.45 5.56 0.09 -8.86 16 19 C -0.15 -1.57 3.43 -90.24 -0.31 -1.88 16 20 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 21 C -0.14 -1.39 6.53 -24.59 -0.16 -1.55 16 22 C 0.05 0.41 7.72 38.34 0.30 0.70 16 23 O -0.37 -4.43 11.52 -35.23 -0.41 -4.84 16 24 C 0.06 0.59 7.33 37.73 0.28 0.87 16 25 N -0.26 -4.47 12.41 33.29 0.41 -4.05 16 26 N -0.09 -1.57 13.16 60.35 0.79 -0.78 16 27 C 0.12 1.97 8.49 -8.50 -0.07 1.90 16 28 H 0.26 7.62 8.73 -40.82 -0.36 7.26 16 29 H 0.08 1.20 7.67 -51.93 -0.40 0.80 16 30 H 0.06 1.15 3.57 -51.93 -0.19 0.96 16 31 H 0.12 1.42 8.14 -51.93 -0.42 1.00 16 32 H 0.19 3.42 6.91 -52.49 -0.36 3.06 16 33 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.40 4.87 8.46 -40.82 -0.35 4.52 16 36 H 0.10 1.16 6.90 -51.93 -0.36 0.80 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.09 0.95 7.63 -51.93 -0.40 0.55 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 353.19 15.07 5.32 5.32 Total: -1.00 -31.92 353.19 -5.89 -37.81 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -5.95 Total: 7.71 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: -1.47 Total: 2.24 kcal Atomic # 7 Polarization: -59.44 SS G_CDS: 0.81 Total: -58.63 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: -0.32 Total: -13.70 kcal Atomic # 14 Polarization: 23.53 SS G_CDS: -4.28 Total: 19.26 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.92 -5.89 -37.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094277615.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.456 kcal (2) G-P(sol) polarization free energy of solvation -31.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds