Wall clock time and date at job start Fri Apr 10 2020 18:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86791 * 120.00135 * 2 1 4 4 H 1.48502 * 109.47223 * 240.00101 * 3 2 1 5 5 H 1.48502 * 109.47350 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47295 * 120.00284 * 3 2 1 7 7 C 1.38811 * 119.99404 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99861 * 194.54339 * 7 2 1 9 9 N 1.36941 * 120.00200 * 14.55017 * 7 2 1 10 10 C 1.46496 * 119.99914 * 188.94824 * 9 7 2 11 11 H 1.08999 * 109.17712 * 55.80437 * 10 9 7 12 12 C 1.51685 * 108.25241 * 296.48344 * 10 9 7 13 13 C 1.53969 * 109.09698 * 294.56670 * 12 10 9 14 14 H 1.08996 * 113.67407 * 169.00227 * 13 12 10 15 15 C 1.57167 * 106.25964 * 294.09628 * 13 12 10 16 16 C 1.55172 * 99.58694 * 73.65732 * 15 13 12 17 17 H 1.08998 * 112.48287 * 162.91470 * 16 15 13 18 18 C 1.52986 * 109.32642 * 175.36150 * 10 9 7 19 19 N 1.47788 * 104.87880 * 40.38887 * 16 15 13 20 20 C 1.34776 * 125.85527 * 153.23481 * 19 16 15 21 21 O 1.21285 * 119.99944 * 355.96402 * 20 19 16 22 22 C 1.50702 * 120.00259 * 175.96810 * 20 19 16 23 23 N 1.46497 * 109.47600 * 173.02303 * 22 20 19 24 24 C 1.36597 * 127.11882 * 264.68864 * 23 22 20 25 25 N 1.30327 * 107.28302 * 179.89174 * 24 23 22 26 26 N 1.28534 * 109.99398 * 0.37734 * 25 24 23 27 27 C 1.31034 * 109.86069 * 359.75798 * 26 25 24 28 28 O 1.35528 * 126.45142 * 180.02562 * 27 26 25 29 29 C 1.47078 * 108.28895 * 333.25704 * 19 16 15 30 30 H 0.97005 * 119.99886 * 359.97438 * 1 2 3 31 31 H 0.97001 * 119.99888 * 8.94910 * 9 7 2 32 32 H 1.08994 * 109.08348 * 174.89909 * 12 10 9 33 33 H 1.08998 * 109.80615 * 54.67128 * 12 10 9 34 34 H 1.08993 * 111.97027 * 315.99270 * 15 13 12 35 35 H 1.08998 * 111.20761 * 191.01294 * 15 13 12 36 36 H 1.08998 * 109.52964 * 305.28908 * 18 10 9 37 37 H 1.08996 * 109.53451 * 185.13971 * 18 10 9 38 38 H 1.09005 * 109.46629 * 293.02064 * 22 20 19 39 39 H 1.09000 * 109.46994 * 53.01480 * 22 20 19 40 40 H 1.08008 * 126.35905 * 0.03029 * 24 23 22 41 41 H 0.96699 * 114.00439 * 270.00156 * 28 27 26 42 42 H 1.08993 * 109.98076 * 120.45829 * 29 19 16 43 43 H 1.09010 * 109.97481 * 241.70084 * 29 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0642 -1.2172 0.2354 9 7 1.3583 -2.3692 -0.2969 10 6 2.0346 -3.6548 -0.1072 11 1 2.3763 -3.7308 0.9251 12 6 3.2263 -3.7075 -1.0443 13 6 2.7230 -3.7121 -2.4994 14 1 3.5118 -3.5581 -3.2357 15 6 1.9522 -5.0678 -2.6942 16 6 0.6642 -4.7508 -1.8890 17 1 -0.1524 -5.4338 -2.1230 18 6 1.0534 -4.7913 -0.4007 19 7 0.3414 -3.3485 -2.2261 20 6 -0.8863 -2.7932 -2.2016 21 8 -1.8564 -3.4772 -1.9525 22 6 -1.0539 -1.3223 -2.4837 23 7 -2.4807 -0.9994 -2.5615 24 6 -3.2486 -0.9241 -3.6887 25 7 -4.4573 -0.6129 -3.3137 26 7 -4.5007 -0.4802 -2.0360 27 6 -3.3156 -0.7062 -1.5246 28 8 -2.9827 -0.6579 -0.2117 29 6 1.5898 -2.6631 -2.5935 30 1 -0.4850 0.8401 0.0004 31 1 0.4488 -2.3446 -0.6331 32 1 3.7919 -4.6189 -0.8506 33 1 3.8633 -2.8383 -0.8808 34 1 2.4918 -5.9097 -2.2604 35 1 1.7267 -5.2456 -3.7456 36 1 0.1608 -4.6696 0.2129 37 1 1.5245 -5.7474 -0.1731 38 1 -0.5937 -0.7440 -1.6825 39 1 -0.5736 -1.0771 -3.4309 40 1 -2.9163 -1.0934 -4.7024 41 1 -2.6873 0.2129 0.0875 42 1 1.5193 -2.2814 -3.6119 43 1 1.7821 -1.8432 -1.9013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094900946.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:31 Heat of formation + Delta-G solvation = 90.963806 kcal Electronic energy + Delta-G solvation = -30049.059544 eV Core-core repulsion = 26134.380667 eV Total energy + Delta-G solvation = -3914.678877 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.46544 -41.12825 -38.09747 -36.83423 -34.66563 -34.07821 -33.07645 -31.36863 -30.91930 -29.29186 -28.43222 -27.27587 -25.31025 -23.98497 -22.54956 -21.82145 -21.43939 -21.25859 -19.43078 -18.64223 -18.06330 -17.77959 -16.88107 -16.28239 -15.70842 -15.34454 -15.07572 -14.96518 -14.76747 -14.17397 -13.96561 -13.72450 -13.42208 -13.19791 -12.85327 -12.59673 -12.24254 -12.02566 -11.97187 -11.84914 -11.65566 -11.59238 -11.44876 -11.18787 -11.01274 -10.91335 -10.57175 -10.49767 -10.30821 -10.16766 -10.00369 -9.73242 -9.64531 -9.19293 -8.81387 -8.63140 -8.02744 -6.97648 -6.24361 -3.52759 2.14343 2.63610 3.03822 3.16557 3.23666 3.24972 3.26336 3.50752 4.22920 4.43363 4.62525 4.85323 4.93455 4.97177 4.99000 5.07689 5.19706 5.38556 5.49445 5.55296 5.56428 5.63394 5.71864 5.83135 5.87535 5.98019 6.07692 6.13563 6.15741 6.30529 6.38889 6.41860 6.57401 6.59818 6.62256 6.68672 6.83062 7.03904 7.14078 7.34936 7.91908 7.97238 8.07867 8.56052 9.06599 9.13515 9.64139 10.05317 10.91459 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.011436 B = 0.007238 C = 0.005110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2447.910844 B = 3867.408968 C = 5478.240042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.023 4.023 3 Si 0.910 3.090 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.223 4.223 8 H 0.078 0.922 9 N -0.726 5.726 10 C 0.168 3.832 11 H 0.038 0.962 12 C -0.125 4.125 13 C -0.088 4.088 14 H 0.089 0.911 15 C -0.129 4.129 16 C 0.135 3.865 17 H 0.089 0.911 18 C -0.135 4.135 19 N -0.594 5.594 20 C 0.525 3.475 21 O -0.545 6.545 22 C 0.047 3.953 23 N -0.456 5.456 24 C 0.146 3.854 25 N -0.290 5.290 26 N -0.310 5.310 27 C 0.386 3.614 28 O -0.420 6.420 29 C 0.060 3.940 30 H 0.256 0.744 31 H 0.389 0.611 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.200 0.800 39 H 0.103 0.897 40 H 0.215 0.785 41 H 0.407 0.593 42 H 0.032 0.968 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.173 -4.644 -6.524 10.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.217 4.217 3 Si 0.740 3.260 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.353 4.353 8 H 0.096 0.904 9 N -0.375 5.375 10 C 0.059 3.941 11 H 0.056 0.944 12 C -0.164 4.164 13 C -0.107 4.107 14 H 0.107 0.893 15 C -0.167 4.167 16 C 0.032 3.968 17 H 0.107 0.893 18 C -0.174 4.174 19 N -0.329 5.329 20 C 0.313 3.687 21 O -0.423 6.423 22 C -0.079 4.079 23 N -0.157 5.157 24 C -0.142 4.142 25 N -0.132 5.132 26 N -0.162 5.162 27 C 0.081 3.919 28 O -0.219 6.219 29 C -0.062 4.062 30 H 0.066 0.934 31 H 0.230 0.770 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.215 0.785 39 H 0.121 0.879 40 H 0.231 0.769 41 H 0.265 0.735 42 H 0.050 0.950 43 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 5.124 -5.085 -6.171 9.497 hybrid contribution 1.921 0.854 0.086 2.104 sum 7.045 -4.230 -6.085 10.225 Atomic orbital electron populations 1.69364 1.05075 1.25486 1.57162 1.24760 0.95544 0.98038 1.03349 0.86185 0.78797 0.82764 0.78234 1.21043 1.21471 1.21020 1.19439 0.93613 0.84881 1.37329 0.90417 1.43781 1.17250 1.00150 1.76316 1.20041 0.91463 0.86340 0.96217 0.94384 1.21975 0.98933 1.01013 0.94524 1.22732 0.96690 0.93631 0.97674 0.89309 1.23331 0.95908 0.97908 0.99593 1.22121 0.96439 0.83509 0.94740 0.89331 1.22274 1.00253 0.98956 0.95918 1.48544 1.06695 1.11344 1.66289 1.20186 0.81795 0.89365 0.77370 1.90720 1.38239 1.63414 1.49897 1.23130 0.78427 0.96385 1.09993 1.46469 1.10702 1.50967 1.07560 1.26112 0.88988 1.05868 0.93183 1.74051 1.16944 1.17840 1.04346 1.74521 1.16788 1.22816 1.02108 1.22173 0.86030 1.00245 0.83464 1.84937 1.85648 1.37720 1.13602 1.23464 0.81946 1.00550 1.00204 0.93438 0.77022 0.93053 0.91040 0.90018 0.91571 0.91605 0.91093 0.78527 0.87855 0.76894 0.73484 0.94995 0.81692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -20.87 9.79 55.49 0.54 -20.33 16 2 C -0.02 -0.52 5.43 -17.43 -0.09 -0.61 16 3 Si 0.91 18.33 29.58 -169.99 -5.03 13.30 16 4 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.29 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 7 C -0.22 -4.84 7.51 -15.06 -0.11 -4.95 16 8 H 0.08 1.66 7.15 -52.49 -0.38 1.28 16 9 N -0.73 -14.76 2.77 -54.09 -0.15 -14.91 16 10 C 0.17 2.89 3.19 -68.61 -0.22 2.67 16 11 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 12 C -0.12 -1.76 5.09 -26.89 -0.14 -1.90 16 13 C -0.09 -1.15 4.37 -86.95 -0.38 -1.53 16 14 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 15 C -0.13 -1.56 6.30 -23.32 -0.15 -1.71 16 16 C 0.14 2.10 3.96 -65.61 -0.26 1.84 16 17 H 0.09 1.43 7.98 -51.93 -0.41 1.02 16 18 C -0.14 -2.16 5.40 -26.28 -0.14 -2.30 16 19 N -0.59 -10.33 1.72 -161.81 -0.28 -10.61 16 20 C 0.52 10.53 6.29 -10.98 -0.07 10.46 16 21 O -0.55 -12.94 16.62 5.55 0.09 -12.85 16 22 C 0.05 0.86 5.82 -5.19 -0.03 0.83 16 23 N -0.46 -8.73 2.32 -121.04 -0.28 -9.01 16 24 C 0.15 2.53 12.79 -89.08 -1.14 1.39 16 25 N -0.29 -5.82 12.18 29.87 0.36 -5.46 16 26 N -0.31 -6.74 12.22 29.65 0.36 -6.38 16 27 C 0.39 8.16 9.15 -88.75 -0.81 7.34 16 28 O -0.42 -8.73 13.58 -18.28 -0.25 -8.98 16 29 C 0.06 0.95 4.99 -2.83 -0.01 0.93 16 30 H 0.26 5.63 7.93 -40.82 -0.32 5.30 16 31 H 0.39 8.39 3.19 -40.82 -0.13 8.26 16 32 H 0.05 0.62 8.00 -51.93 -0.42 0.20 16 33 H 0.07 1.08 7.02 -51.93 -0.36 0.71 16 34 H 0.08 0.84 7.79 -51.93 -0.40 0.44 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 37 H 0.07 0.92 8.00 -51.93 -0.42 0.51 16 38 H 0.20 4.02 4.01 -51.93 -0.21 3.82 16 39 H 0.10 1.56 8.06 -51.93 -0.42 1.14 16 40 H 0.21 2.59 8.06 -52.48 -0.42 2.16 16 41 H 0.41 7.09 8.49 45.56 0.39 7.48 16 42 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.17 3.07 3.65 -60.70 -0.22 2.85 16 LS Contribution 332.42 15.07 5.01 5.01 Total: -1.00 -29.15 332.42 -7.81 -36.96 By element: Atomic # 1 Polarization: 25.42 SS G_CDS: -4.64 Total: 20.79 kcal Atomic # 6 Polarization: 16.02 SS G_CDS: -3.56 Total: 12.46 kcal Atomic # 7 Polarization: -67.25 SS G_CDS: 0.56 Total: -66.69 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -0.16 Total: -21.83 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.03 Total: 13.30 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.15 -7.81 -36.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094900946.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.924 kcal (2) G-P(sol) polarization free energy of solvation -29.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds