Wall clock time and date at job start Fri Apr 10 2020 18:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86791 * 120.00135 * 2 1 4 4 H 1.48502 * 109.47223 * 240.00101 * 3 2 1 5 5 H 1.48502 * 109.47350 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47295 * 120.00284 * 3 2 1 7 7 C 1.38811 * 119.99404 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99861 * 194.54339 * 7 2 1 9 9 N 1.36941 * 120.00200 * 14.55017 * 7 2 1 10 10 C 1.46496 * 119.99914 * 188.94824 * 9 7 2 11 11 H 1.08999 * 109.17712 * 55.80437 * 10 9 7 12 12 C 1.51685 * 108.25241 * 296.48344 * 10 9 7 13 13 C 1.53969 * 109.09698 * 294.56670 * 12 10 9 14 14 H 1.08996 * 113.67407 * 169.00227 * 13 12 10 15 15 C 1.57167 * 106.25964 * 294.09628 * 13 12 10 16 16 C 1.55172 * 99.58694 * 73.65732 * 15 13 12 17 17 H 1.08998 * 112.48287 * 162.91470 * 16 15 13 18 18 C 1.52986 * 109.32642 * 175.36150 * 10 9 7 19 19 N 1.47788 * 104.87880 * 40.38887 * 16 15 13 20 20 C 1.34776 * 125.85527 * 153.23481 * 19 16 15 21 21 O 1.21285 * 119.99944 * 355.96402 * 20 19 16 22 22 C 1.50702 * 120.00259 * 175.96810 * 20 19 16 23 23 N 1.46497 * 109.47600 * 173.02303 * 22 20 19 24 24 C 1.36597 * 127.11882 * 264.68864 * 23 22 20 25 25 N 1.30327 * 107.28302 * 179.89174 * 24 23 22 26 26 N 1.28534 * 109.99398 * 0.37734 * 25 24 23 27 27 C 1.31034 * 109.86069 * 359.75798 * 26 25 24 28 28 O 1.35528 * 126.45142 * 180.02562 * 27 26 25 29 29 C 1.47078 * 108.28895 * 333.25704 * 19 16 15 30 30 H 0.97005 * 119.99886 * 359.97438 * 1 2 3 31 31 H 0.97001 * 119.99888 * 8.94910 * 9 7 2 32 32 H 1.08994 * 109.08348 * 174.89909 * 12 10 9 33 33 H 1.08998 * 109.80615 * 54.67128 * 12 10 9 34 34 H 1.08993 * 111.97027 * 315.99270 * 15 13 12 35 35 H 1.08998 * 111.20761 * 191.01294 * 15 13 12 36 36 H 1.08998 * 109.52964 * 305.28908 * 18 10 9 37 37 H 1.08996 * 109.53451 * 185.13971 * 18 10 9 38 38 H 1.09005 * 109.46629 * 293.02064 * 22 20 19 39 39 H 1.09000 * 109.46994 * 53.01480 * 22 20 19 40 40 H 1.08008 * 126.35905 * 0.03029 * 24 23 22 41 41 H 0.96699 * 114.00439 * 270.00156 * 28 27 26 42 42 H 1.08993 * 109.98076 * 120.45829 * 29 19 16 43 43 H 1.09010 * 109.97481 * 241.70084 * 29 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0642 -1.2172 0.2354 9 7 1.3583 -2.3692 -0.2969 10 6 2.0346 -3.6548 -0.1072 11 1 2.3763 -3.7308 0.9251 12 6 3.2263 -3.7075 -1.0443 13 6 2.7230 -3.7121 -2.4994 14 1 3.5118 -3.5581 -3.2357 15 6 1.9522 -5.0678 -2.6942 16 6 0.6642 -4.7508 -1.8890 17 1 -0.1524 -5.4338 -2.1230 18 6 1.0534 -4.7913 -0.4007 19 7 0.3414 -3.3485 -2.2261 20 6 -0.8863 -2.7932 -2.2016 21 8 -1.8564 -3.4772 -1.9525 22 6 -1.0539 -1.3223 -2.4837 23 7 -2.4807 -0.9994 -2.5615 24 6 -3.2486 -0.9241 -3.6887 25 7 -4.4573 -0.6129 -3.3137 26 7 -4.5007 -0.4802 -2.0360 27 6 -3.3156 -0.7062 -1.5246 28 8 -2.9827 -0.6579 -0.2117 29 6 1.5898 -2.6631 -2.5935 30 1 -0.4850 0.8401 0.0004 31 1 0.4488 -2.3446 -0.6331 32 1 3.7919 -4.6189 -0.8506 33 1 3.8633 -2.8383 -0.8808 34 1 2.4918 -5.9097 -2.2604 35 1 1.7267 -5.2456 -3.7456 36 1 0.1608 -4.6696 0.2129 37 1 1.5245 -5.7474 -0.1731 38 1 -0.5937 -0.7440 -1.6825 39 1 -0.5736 -1.0771 -3.4309 40 1 -2.9163 -1.0934 -4.7024 41 1 -2.6873 0.2129 0.0875 42 1 1.5193 -2.2814 -3.6119 43 1 1.7821 -1.8432 -1.9013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094900946.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:30 Heat of formation + Delta-G solvation = 71.649038 kcal Electronic energy + Delta-G solvation = -30049.897095 eV Core-core repulsion = 26134.380667 eV Total energy + Delta-G solvation = -3915.516429 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.97125 -42.42328 -39.59322 -38.42821 -36.15999 -35.59301 -34.48493 -32.77214 -32.19778 -30.81580 -29.86746 -28.62721 -26.59766 -25.51113 -23.94387 -23.31399 -22.75004 -22.60138 -20.70228 -20.00874 -19.59912 -19.31118 -18.32492 -17.75115 -17.11275 -16.83826 -16.61524 -16.38329 -16.12703 -15.66739 -15.40760 -15.25410 -14.91446 -14.46668 -14.15968 -13.81305 -13.51554 -13.37343 -13.34433 -13.20202 -13.15861 -12.97455 -12.80147 -12.66380 -12.54430 -12.36978 -12.12397 -11.86187 -11.73053 -11.56539 -11.28997 -11.23069 -10.90404 -10.70943 -10.35805 -10.16774 -9.42546 -8.51558 -7.90922 -5.19163 0.66421 1.19546 1.52703 1.55313 1.60851 1.62695 1.74604 2.15455 2.59196 2.92619 3.28876 3.44681 3.67465 3.72331 3.75118 3.82429 3.90061 4.12994 4.18761 4.25290 4.36855 4.44589 4.49863 4.57445 4.67650 4.77739 4.89577 4.91930 4.95337 5.08166 5.10100 5.12856 5.27692 5.37029 5.41871 5.47258 5.58416 5.67540 5.68547 5.87993 6.30584 6.53373 6.58314 7.09284 7.37571 7.61168 8.07047 8.40035 9.24288 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.011436 B = 0.007238 C = 0.005110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2447.910844 B = 3867.408968 C = 5478.240042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.060 4.060 3 Si 0.959 3.041 4 H -0.275 1.275 5 H -0.303 1.303 6 H -0.295 1.295 7 C -0.220 4.220 8 H 0.079 0.921 9 N -0.735 5.735 10 C 0.160 3.840 11 H 0.020 0.980 12 C -0.116 4.116 13 C -0.079 4.079 14 H 0.122 0.878 15 C -0.110 4.110 16 C 0.123 3.877 17 H 0.078 0.922 18 C -0.129 4.129 19 N -0.587 5.587 20 C 0.518 3.482 21 O -0.594 6.594 22 C 0.047 3.953 23 N -0.458 5.458 24 C 0.166 3.834 25 N -0.317 5.317 26 N -0.335 5.335 27 C 0.367 3.633 28 O -0.434 6.434 29 C 0.051 3.949 30 H 0.252 0.748 31 H 0.381 0.619 32 H 0.081 0.919 33 H 0.060 0.940 34 H 0.110 0.890 35 H 0.082 0.918 36 H 0.023 0.977 37 H 0.106 0.894 38 H 0.186 0.814 39 H 0.140 0.860 40 H 0.266 0.734 41 H 0.415 0.585 42 H 0.053 0.947 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.861 -5.848 -8.870 14.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.252 4.252 3 Si 0.790 3.210 4 H -0.201 1.201 5 H -0.230 1.230 6 H -0.222 1.222 7 C -0.351 4.351 8 H 0.097 0.903 9 N -0.383 5.383 10 C 0.052 3.948 11 H 0.038 0.962 12 C -0.155 4.155 13 C -0.098 4.098 14 H 0.140 0.860 15 C -0.148 4.148 16 C 0.020 3.980 17 H 0.096 0.904 18 C -0.168 4.168 19 N -0.320 5.320 20 C 0.307 3.693 21 O -0.476 6.476 22 C -0.078 4.078 23 N -0.158 5.158 24 C -0.121 4.121 25 N -0.158 5.158 26 N -0.187 5.187 27 C 0.061 3.939 28 O -0.235 6.235 29 C -0.070 4.070 30 H 0.062 0.938 31 H 0.221 0.779 32 H 0.100 0.900 33 H 0.079 0.921 34 H 0.128 0.872 35 H 0.101 0.899 36 H 0.042 0.958 37 H 0.124 0.876 38 H 0.201 0.799 39 H 0.158 0.842 40 H 0.282 0.718 41 H 0.275 0.725 42 H 0.071 0.929 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 7.874 -6.302 -8.527 13.207 hybrid contribution 1.120 1.190 0.860 1.847 sum 8.994 -5.113 -7.666 12.877 Atomic orbital electron populations 1.69484 1.05659 1.25449 1.58198 1.25199 0.96031 0.99698 1.04261 0.85435 0.77435 0.80331 0.77809 1.20077 1.22969 1.22232 1.19575 0.93655 0.85502 1.36345 0.90311 1.43952 1.17076 1.00963 1.76333 1.20270 0.92788 0.85387 0.96344 0.96230 1.21851 0.97137 1.02076 0.94485 1.22794 0.96388 0.93076 0.97518 0.86007 1.23323 0.93265 0.98146 1.00079 1.22362 0.98158 0.82485 0.94977 0.90406 1.22240 0.98467 1.00242 0.95834 1.48649 1.06420 1.12303 1.64625 1.20454 0.82105 0.89755 0.77030 1.90688 1.39937 1.64544 1.52459 1.23136 0.78132 0.95250 1.11310 1.46554 1.11007 1.50730 1.07528 1.27151 0.87793 1.02709 0.94487 1.73988 1.18563 1.19571 1.03674 1.74440 1.17435 1.23673 1.03145 1.22310 0.86551 1.01247 0.83779 1.84888 1.85797 1.38653 1.14176 1.23500 0.82148 1.00796 1.00546 0.93841 0.77926 0.90016 0.92081 0.87203 0.89899 0.95835 0.87620 0.79877 0.84246 0.71813 0.72495 0.92869 0.84328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -43.33 9.79 21.65 0.21 -43.12 16 2 C -0.06 -2.68 5.43 84.86 0.46 -2.22 16 3 Si 0.96 37.81 29.58 68.60 2.03 39.84 16 4 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 5 H -0.30 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.30 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.22 -9.52 7.51 84.03 0.63 -8.89 16 8 H 0.08 3.32 7.15 -2.91 -0.02 3.30 16 9 N -0.73 -29.76 2.77 -325.03 -0.90 -30.65 16 10 C 0.16 5.30 3.19 44.56 0.14 5.44 16 11 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 12 C -0.12 -2.87 5.09 30.49 0.16 -2.72 16 13 C -0.08 -1.70 4.37 -8.42 -0.04 -1.73 16 14 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 15 C -0.11 -2.12 6.30 32.80 0.21 -1.91 16 16 C 0.12 3.57 3.96 45.79 0.18 3.75 16 17 H 0.08 2.44 7.98 -2.39 -0.02 2.42 16 18 C -0.13 -3.98 5.40 30.89 0.17 -3.82 16 19 N -0.59 -19.57 1.72 -784.24 -1.35 -20.92 16 20 C 0.52 20.63 6.29 87.66 0.55 21.18 16 21 O -0.59 -28.78 16.62 -3.04 -0.05 -28.83 16 22 C 0.05 1.71 5.82 85.63 0.50 2.21 16 23 N -0.46 -17.34 2.32 -647.66 -1.50 -18.85 16 24 C 0.17 5.48 12.79 179.81 2.30 7.78 16 25 N -0.32 -12.63 12.18 -59.40 -0.72 -13.35 16 26 N -0.34 -14.87 12.22 -173.68 -2.12 -16.99 16 27 C 0.37 15.91 9.15 179.70 1.64 17.56 16 28 O -0.43 -18.96 13.58 -88.31 -1.20 -20.15 16 29 C 0.05 1.47 4.99 86.85 0.43 1.90 16 30 H 0.25 11.42 7.93 -92.70 -0.74 10.68 16 31 H 0.38 16.59 3.19 -92.71 -0.30 16.29 16 32 H 0.08 1.56 8.00 -2.39 -0.02 1.54 16 33 H 0.06 1.66 7.02 -2.39 -0.02 1.64 16 34 H 0.11 1.58 7.79 -2.39 -0.02 1.56 16 35 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.11 2.46 8.00 -2.39 -0.02 2.44 16 38 H 0.19 7.51 4.01 -2.38 -0.01 7.50 16 39 H 0.14 3.86 8.06 -2.39 -0.02 3.84 16 40 H 0.27 5.42 8.06 -2.91 -0.02 5.40 16 41 H 0.42 15.44 8.49 -74.06 -0.63 14.81 16 42 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.14 4.91 3.65 -19.71 -0.07 4.84 16 Total: -1.00 -66.69 332.42 1.85 -64.84 By element: Atomic # 1 Polarization: 49.51 SS G_CDS: 0.13 Total: 49.64 kcal Atomic # 6 Polarization: 31.21 SS G_CDS: 7.33 Total: 38.54 kcal Atomic # 7 Polarization: -137.49 SS G_CDS: -6.39 Total: -143.88 kcal Atomic # 8 Polarization: -47.73 SS G_CDS: -1.25 Total: -48.98 kcal Atomic # 14 Polarization: 37.81 SS G_CDS: 2.03 Total: 39.84 kcal Total: -66.69 1.85 -64.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094900946.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.488 kcal (2) G-P(sol) polarization free energy of solvation -66.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds