Wall clock time and date at job start Fri Apr 10 2020 18:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46897 * 110.99819 * 2 1 4 4 C 1.50706 * 109.47040 * 66.04632 * 3 2 1 5 5 H 1.07997 * 119.99920 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99754 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00008 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 119.99772 * 180.02562 * 6 4 3 9 9 H 1.48495 * 109.47480 * 89.99981 * 8 6 4 10 10 H 1.48501 * 109.46683 * 210.00273 * 8 6 4 11 11 H 1.48500 * 109.46828 * 329.99796 * 8 6 4 12 12 C 1.46900 * 111.00067 * 236.04423 * 2 1 3 13 13 C 1.52996 * 109.47266 * 199.84778 * 12 2 1 14 14 H 1.08995 * 109.47295 * 300.46832 * 13 12 2 15 15 O 1.42900 * 109.46956 * 60.46458 * 13 12 2 16 16 C 1.52995 * 109.47238 * 180.46423 * 13 12 2 17 17 N 1.46903 * 109.47354 * 180.02562 * 16 13 12 18 18 C 1.46903 * 111.00168 * 180.02562 * 17 16 13 19 19 C 1.50692 * 109.47057 * 179.97438 * 18 17 16 20 20 C 1.38353 * 119.86190 * 105.00089 * 19 18 17 21 21 C 1.37927 * 120.18231 * 180.23433 * 20 19 18 22 22 C 1.39653 * 119.89840 * 359.49098 * 21 20 19 23 23 C 1.43202 * 120.14261 * 180.23660 * 22 21 20 24 24 N 9.71282 * 169.84810 * 75.47221 * 13 1 2 25 25 C 1.39588 * 119.72255 * 0.50460 * 22 21 20 26 26 C 1.38201 * 119.81714 * 359.74909 * 25 22 21 27 27 F 1.35102 * 119.95061 * 179.97438 * 26 25 22 28 28 H 1.09004 * 109.46822 * 188.77533 * 1 2 3 29 29 H 1.08999 * 109.46907 * 308.77271 * 1 2 3 30 30 H 1.08993 * 109.47225 * 68.77665 * 1 2 3 31 31 H 1.09002 * 109.47274 * 186.04144 * 3 2 1 32 32 H 1.08997 * 109.47080 * 306.04476 * 3 2 1 33 33 H 0.96998 * 119.99668 * 179.97438 * 7 6 4 34 34 H 1.08998 * 109.46675 * 79.84827 * 12 2 1 35 35 H 1.09002 * 109.47181 * 319.85590 * 12 2 1 36 36 H 0.96708 * 114.00430 * 59.99767 * 15 13 12 37 37 H 1.08991 * 109.47169 * 60.00112 * 16 13 12 38 38 H 1.09005 * 109.47167 * 300.00415 * 16 13 12 39 39 H 1.00902 * 110.99507 * 56.04455 * 17 16 13 40 40 H 1.08995 * 109.46883 * 60.00068 * 18 17 16 41 41 H 1.09005 * 109.46789 * 300.00228 * 18 17 16 42 42 H 1.08003 * 119.90758 * 359.95253 * 20 19 18 43 43 H 1.08001 * 120.05570 * 179.74387 * 21 20 19 44 44 H 1.07996 * 120.09481 * 179.77150 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2985 5 1 1.0746 1.5112 2.0488 6 6 2.0276 3.3492 1.5289 7 7 2.7136 4.0013 0.6158 8 14 1.5838 4.1865 3.1387 9 1 2.6606 3.9494 4.1334 10 1 1.4320 5.6462 2.9119 11 1 0.3059 3.6295 3.6504 12 6 1.9955 -0.7660 -1.1376 13 6 3.4449 -1.1666 -0.8556 14 1 4.0464 -0.2706 -0.7027 15 8 3.4946 -1.9797 0.3184 16 6 3.9969 -1.9545 -2.0453 17 7 5.3884 -2.3396 -1.7744 18 6 5.9528 -3.0991 -2.8981 19 6 7.3780 -3.4753 -2.5847 20 6 7.6853 -4.7776 -2.2331 21 6 8.9867 -5.1281 -1.9403 22 6 9.9986 -4.1680 -2.0092 23 6 11.3523 -4.5274 -1.7111 24 7 12.4262 -4.8126 -1.4746 25 6 9.6839 -2.8553 -2.3644 26 6 8.3752 -2.5156 -2.6504 27 9 8.0676 -1.2457 -2.9939 28 1 -0.3633 -1.0157 0.1568 29 1 -0.3633 0.6436 0.8012 30 1 -0.3633 0.3720 -0.9579 31 1 3.0797 1.3444 -0.1082 32 1 1.5611 1.9273 -0.8309 33 1 2.9882 4.9174 0.7778 34 1 1.9566 -0.1526 -2.0377 35 1 1.3923 -1.6623 -1.2824 36 1 2.9803 -2.7961 0.2536 37 1 3.9590 -1.3343 -2.9408 38 1 3.3954 -2.8506 -2.1982 39 1 5.4581 -2.8614 -0.9136 40 1 5.9289 -2.4863 -3.7992 41 1 5.3647 -4.0029 -3.0576 42 1 6.9032 -5.5208 -2.1835 43 1 9.2237 -6.1444 -1.6620 44 1 10.4611 -2.1072 -2.4160 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591733991.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:05 Heat of formation + Delta-G solvation = -33.114443 kcal Electronic energy + Delta-G solvation = -25744.623394 eV Core-core repulsion = 21804.644118 eV Total energy + Delta-G solvation = -3939.979276 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.08104 -39.89653 -38.27778 -37.01620 -36.02912 -35.02771 -32.47265 -32.26552 -31.15092 -29.70765 -27.36566 -26.89068 -24.92015 -23.42703 -23.28331 -22.32885 -21.49358 -20.03788 -19.67764 -17.22294 -16.88848 -16.42584 -16.38927 -16.00708 -15.85671 -15.58612 -14.90408 -14.74715 -14.50230 -14.43699 -14.29758 -14.25662 -13.91420 -13.67986 -13.34143 -13.30134 -13.20677 -12.68928 -12.48143 -12.22788 -12.05865 -11.92430 -11.87298 -11.57329 -11.40666 -11.14494 -10.88735 -10.71401 -10.59341 -10.33407 -9.74922 -9.67079 -9.52385 -9.15546 -9.08819 -8.55323 -8.38359 -7.18982 -5.98116 -3.98606 0.12732 0.68251 2.19678 2.37552 3.23866 3.29678 3.36101 3.41756 3.44964 3.90362 3.96609 4.23113 4.31181 4.43882 4.47398 4.68939 4.76650 4.89157 5.02583 5.09858 5.23424 5.30284 5.35993 5.40620 5.46730 5.51005 5.56539 5.66818 5.69914 5.77225 5.79212 6.03489 6.13218 6.26977 6.32510 6.52261 6.72854 6.80724 7.00847 7.25558 7.31839 7.34804 7.83366 8.06393 8.13824 8.23806 8.58849 9.08471 9.65026 11.12941 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.015517 B = 0.002324 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.994675 B =12046.271157 C =13004.755683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.531 5.531 3 C 0.192 3.808 4 C -0.504 4.504 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.274 1.274 12 C 0.026 3.974 13 C 0.116 3.884 14 H 0.112 0.888 15 O -0.540 6.540 16 C 0.031 3.969 17 N -0.677 5.677 18 C 0.094 3.906 19 C -0.090 4.090 20 C -0.085 4.085 21 C -0.083 4.083 22 C 0.000 4.000 23 C 0.255 3.745 24 N -0.409 5.409 25 C -0.111 4.111 26 C 0.131 3.869 27 F -0.118 7.118 28 H 0.043 0.957 29 H 0.077 0.923 30 H 0.007 0.993 31 H 0.032 0.968 32 H -0.012 1.012 33 H 0.261 0.739 34 H 0.033 0.967 35 H 0.058 0.942 36 H 0.358 0.642 37 H 0.080 0.920 38 H 0.030 0.970 39 H 0.351 0.649 40 H 0.087 0.913 41 H 0.046 0.954 42 H 0.142 0.858 43 H 0.140 0.860 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.812 -20.169 -10.620 24.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.255 5.255 3 C 0.067 3.933 4 C -0.543 4.543 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.199 1.199 12 C -0.103 4.103 13 C 0.056 3.944 14 H 0.129 0.871 15 O -0.342 6.342 16 C -0.099 4.099 17 N -0.309 5.309 18 C -0.034 4.034 19 C -0.093 4.093 20 C -0.104 4.104 21 C -0.104 4.104 22 C -0.004 4.004 23 C -0.060 4.060 24 N -0.084 5.084 25 C -0.133 4.133 26 C 0.111 3.889 27 F -0.096 7.096 28 H 0.062 0.938 29 H 0.095 0.905 30 H 0.026 0.974 31 H 0.050 0.950 32 H 0.006 0.994 33 H 0.070 0.930 34 H 0.051 0.949 35 H 0.076 0.924 36 H 0.203 0.797 37 H 0.099 0.901 38 H 0.048 0.952 39 H 0.171 0.829 40 H 0.105 0.895 41 H 0.064 0.936 42 H 0.160 0.840 43 H 0.157 0.843 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 10.334 -19.501 -9.869 24.176 hybrid contribution -1.695 0.118 -0.291 1.724 sum 8.639 -19.383 -10.160 23.528 Atomic orbital electron populations 1.22226 0.88937 0.99875 1.00061 1.62028 1.06444 1.17869 1.39132 1.19773 0.95565 0.81443 0.96496 1.21149 1.34679 0.96789 1.01695 0.91901 1.24991 0.95368 0.97402 0.96937 1.69957 1.38421 1.11458 1.34028 0.86504 0.78834 0.78337 0.83756 1.20596 1.21402 1.19930 1.22655 0.95827 0.98100 0.93767 1.21975 0.95286 0.93894 0.83213 0.87061 1.86719 1.73174 1.35803 1.38521 1.22695 0.87763 0.98962 1.00441 1.60317 1.19174 1.46734 1.04688 1.20879 0.89436 0.97191 0.95918 1.20192 0.95822 0.93190 1.00047 1.20912 0.96474 0.95147 0.97840 1.21176 0.91646 0.99238 0.98323 1.15658 0.86058 0.93856 1.04824 1.25539 0.92616 0.93952 0.93932 1.81287 1.11352 1.07426 1.08356 1.21151 0.95981 0.95964 1.00166 1.17203 0.92248 0.79936 0.99518 1.91604 1.93544 1.35548 1.88924 0.93837 0.90450 0.97429 0.94988 0.99414 0.92975 0.94881 0.92377 0.79716 0.90120 0.95176 0.82929 0.89456 0.93596 0.83987 0.84257 0.83584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 9.37 60.07 0.56 1.28 16 2 N -0.53 -11.26 4.56 -244.37 -1.11 -12.37 16 3 C 0.19 5.02 4.55 -4.97 -0.02 4.99 16 4 C -0.50 -14.35 8.39 -34.43 -0.29 -14.64 16 5 H 0.06 1.78 7.17 -52.49 -0.38 1.40 16 6 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 8 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 9 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 12 C 0.03 0.44 4.66 -3.83 -0.02 0.42 16 13 C 0.12 1.78 3.30 -26.74 -0.09 1.69 16 14 H 0.11 2.16 6.78 -51.93 -0.35 1.80 16 15 O -0.54 -8.33 12.55 -35.23 -0.44 -8.77 16 16 C 0.03 0.35 5.39 -3.82 -0.02 0.33 16 17 N -0.68 -7.23 6.49 -115.06 -0.75 -7.98 16 18 C 0.09 0.75 5.49 -4.98 -0.03 0.72 16 19 C -0.09 -0.68 5.40 -104.47 -0.56 -1.24 16 20 C -0.09 -0.44 9.65 -39.65 -0.38 -0.82 16 21 C -0.08 -0.43 9.75 -39.17 -0.38 -0.81 16 22 C 0.00 0.00 5.73 -106.94 -0.61 -0.61 16 23 C 0.26 2.21 15.33 -22.47 -0.34 1.86 16 24 N -0.41 -4.54 18.54 41.84 0.78 -3.77 16 25 C -0.11 -0.84 9.74 -39.09 -0.38 -1.22 16 26 C 0.13 1.17 7.24 -39.48 -0.29 0.89 16 27 F -0.12 -1.36 16.74 2.25 0.04 -1.32 16 28 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.08 1.62 6.67 -51.93 -0.35 1.27 16 30 H 0.01 0.13 8.13 -51.93 -0.42 -0.29 16 31 H 0.03 0.90 6.63 -51.93 -0.34 0.55 16 32 H -0.01 -0.33 8.12 -51.93 -0.42 -0.75 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.03 0.56 8.00 -51.93 -0.42 0.15 16 35 H 0.06 0.80 7.94 -51.93 -0.41 0.39 16 36 H 0.36 4.00 9.05 45.56 0.41 4.41 16 37 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 39 H 0.35 3.69 8.11 -39.29 -0.32 3.37 16 40 H 0.09 0.74 8.07 -51.93 -0.42 0.32 16 41 H 0.05 0.28 7.94 -51.93 -0.41 -0.14 16 42 H 0.14 0.41 7.99 -52.48 -0.42 -0.01 16 43 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 44 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 381.89 15.07 5.76 5.76 Total: -1.00 -33.44 381.89 -8.47 -41.91 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -5.50 Total: 1.58 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -2.95 Total: -5.70 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: -0.35 Total: -50.39 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: -0.44 Total: -8.77 kcal Atomic # 9 Polarization: -1.36 SS G_CDS: 0.04 Total: -1.32 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.44 -8.47 -41.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591733991.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.792 kcal (2) G-P(sol) polarization free energy of solvation -33.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds