Wall clock time and date at job start Fri Apr 10 2020 18:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46897 * 110.99819 * 2 1 4 4 C 1.50706 * 109.47040 * 66.04632 * 3 2 1 5 5 H 1.07997 * 119.99920 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99754 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00008 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 119.99772 * 180.02562 * 6 4 3 9 9 H 1.48495 * 109.47480 * 89.99981 * 8 6 4 10 10 H 1.48501 * 109.46683 * 210.00273 * 8 6 4 11 11 H 1.48500 * 109.46828 * 329.99796 * 8 6 4 12 12 C 1.46900 * 111.00067 * 236.04423 * 2 1 3 13 13 C 1.52996 * 109.47266 * 199.84778 * 12 2 1 14 14 H 1.08995 * 109.47295 * 300.46832 * 13 12 2 15 15 O 1.42900 * 109.46956 * 60.46458 * 13 12 2 16 16 C 1.52995 * 109.47238 * 180.46423 * 13 12 2 17 17 N 1.46903 * 109.47354 * 180.02562 * 16 13 12 18 18 C 1.46903 * 111.00168 * 180.02562 * 17 16 13 19 19 C 1.50692 * 109.47057 * 179.97438 * 18 17 16 20 20 C 1.38353 * 119.86190 * 105.00089 * 19 18 17 21 21 C 1.37927 * 120.18231 * 180.23433 * 20 19 18 22 22 C 1.39653 * 119.89840 * 359.49098 * 21 20 19 23 23 C 1.43202 * 120.14261 * 180.23660 * 22 21 20 24 24 N 9.71282 * 169.84810 * 75.47221 * 13 1 2 25 25 C 1.39588 * 119.72255 * 0.50460 * 22 21 20 26 26 C 1.38201 * 119.81714 * 359.74909 * 25 22 21 27 27 F 1.35102 * 119.95061 * 179.97438 * 26 25 22 28 28 H 1.09004 * 109.46822 * 188.77533 * 1 2 3 29 29 H 1.08999 * 109.46907 * 308.77271 * 1 2 3 30 30 H 1.08993 * 109.47225 * 68.77665 * 1 2 3 31 31 H 1.09002 * 109.47274 * 186.04144 * 3 2 1 32 32 H 1.08997 * 109.47080 * 306.04476 * 3 2 1 33 33 H 0.96998 * 119.99668 * 179.97438 * 7 6 4 34 34 H 1.08998 * 109.46675 * 79.84827 * 12 2 1 35 35 H 1.09002 * 109.47181 * 319.85590 * 12 2 1 36 36 H 0.96708 * 114.00430 * 59.99767 * 15 13 12 37 37 H 1.08991 * 109.47169 * 60.00112 * 16 13 12 38 38 H 1.09005 * 109.47167 * 300.00415 * 16 13 12 39 39 H 1.00902 * 110.99507 * 56.04455 * 17 16 13 40 40 H 1.08995 * 109.46883 * 60.00068 * 18 17 16 41 41 H 1.09005 * 109.46789 * 300.00228 * 18 17 16 42 42 H 1.08003 * 119.90758 * 359.95253 * 20 19 18 43 43 H 1.08001 * 120.05570 * 179.74387 * 21 20 19 44 44 H 1.07996 * 120.09481 * 179.77150 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2985 5 1 1.0746 1.5112 2.0488 6 6 2.0276 3.3492 1.5289 7 7 2.7136 4.0013 0.6158 8 14 1.5838 4.1865 3.1387 9 1 2.6606 3.9494 4.1334 10 1 1.4320 5.6462 2.9119 11 1 0.3059 3.6295 3.6504 12 6 1.9955 -0.7660 -1.1376 13 6 3.4449 -1.1666 -0.8556 14 1 4.0464 -0.2706 -0.7027 15 8 3.4946 -1.9797 0.3184 16 6 3.9969 -1.9545 -2.0453 17 7 5.3884 -2.3396 -1.7744 18 6 5.9528 -3.0991 -2.8981 19 6 7.3780 -3.4753 -2.5847 20 6 7.6853 -4.7776 -2.2331 21 6 8.9867 -5.1281 -1.9403 22 6 9.9986 -4.1680 -2.0092 23 6 11.3523 -4.5274 -1.7111 24 7 12.4262 -4.8126 -1.4746 25 6 9.6839 -2.8553 -2.3644 26 6 8.3752 -2.5156 -2.6504 27 9 8.0676 -1.2457 -2.9939 28 1 -0.3633 -1.0157 0.1568 29 1 -0.3633 0.6436 0.8012 30 1 -0.3633 0.3720 -0.9579 31 1 3.0797 1.3444 -0.1082 32 1 1.5611 1.9273 -0.8309 33 1 2.9882 4.9174 0.7778 34 1 1.9566 -0.1526 -2.0377 35 1 1.3923 -1.6623 -1.2824 36 1 2.9803 -2.7961 0.2536 37 1 3.9590 -1.3343 -2.9408 38 1 3.3954 -2.8506 -2.1982 39 1 5.4581 -2.8614 -0.9136 40 1 5.9289 -2.4863 -3.7992 41 1 5.3647 -4.0029 -3.0576 42 1 6.9032 -5.5208 -2.1835 43 1 9.2237 -6.1444 -1.6620 44 1 10.4611 -2.1072 -2.4160 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591733991.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:05 Heat of formation + Delta-G solvation = -58.721187 kcal Electronic energy + Delta-G solvation = -25745.733785 eV Core-core repulsion = 21804.644118 eV Total energy + Delta-G solvation = -3941.089667 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.82890 -40.45751 -39.50342 -37.84956 -37.30683 -36.06929 -34.58416 -33.00658 -31.69049 -30.87340 -29.30571 -27.89053 -26.21611 -24.91297 -23.92067 -23.00554 -22.73056 -21.64975 -20.28828 -18.60153 -17.89040 -17.64012 -17.18842 -16.98847 -16.71142 -16.59566 -16.52378 -15.98101 -15.68583 -15.44786 -15.06018 -15.00648 -14.96655 -14.81677 -14.59853 -14.27926 -13.99839 -13.92726 -13.73804 -13.41102 -13.12944 -13.00585 -12.85462 -12.76243 -12.53210 -12.52503 -12.41689 -12.27885 -12.18364 -12.11036 -11.48001 -11.30605 -10.73519 -10.59299 -10.06742 -9.72111 -9.28328 -8.91445 -8.18761 -6.28157 -0.43656 0.16686 1.40649 1.43285 1.50866 1.53577 1.75486 2.41445 2.62520 2.69197 3.06273 3.14139 3.38207 3.51539 3.67230 3.76240 3.78594 3.97269 4.07073 4.20973 4.22580 4.40072 4.45756 4.54392 4.58223 4.60859 4.67960 4.74449 4.81774 4.86835 4.95282 5.04469 5.11666 5.17543 5.18348 5.27651 5.30509 5.33718 5.66541 5.73306 6.04178 6.10086 6.33800 6.37911 6.50940 6.68739 6.88313 7.13616 7.41091 8.92370 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.015517 B = 0.002324 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.994675 B =12046.271157 C =13004.755683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.541 5.541 3 C 0.210 3.790 4 C -0.521 4.521 5 H 0.062 0.938 6 C -0.002 4.002 7 N -0.935 5.935 8 Si 0.969 3.031 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.262 1.262 12 C 0.026 3.974 13 C 0.125 3.875 14 H 0.057 0.943 15 O -0.557 6.557 16 C 0.047 3.953 17 N -0.698 5.698 18 C 0.097 3.903 19 C -0.092 4.092 20 C -0.073 4.073 21 C -0.067 4.067 22 C -0.007 4.007 23 C 0.280 3.720 24 N -0.456 5.456 25 C -0.113 4.113 26 C 0.100 3.900 27 F -0.142 7.142 28 H 0.083 0.917 29 H 0.052 0.948 30 H 0.011 0.989 31 H 0.001 0.999 32 H -0.042 1.042 33 H 0.263 0.737 34 H 0.026 0.974 35 H 0.100 0.900 36 H 0.380 0.620 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.353 0.647 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.177 0.823 43 H 0.168 0.832 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.382 -23.148 -10.243 26.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.265 5.265 3 C 0.083 3.917 4 C -0.560 4.560 5 H 0.080 0.920 6 C -0.200 4.200 7 N -0.576 5.576 8 Si 0.793 3.207 9 H -0.201 1.201 10 H -0.207 1.207 11 H -0.186 1.186 12 C -0.103 4.103 13 C 0.065 3.935 14 H 0.075 0.925 15 O -0.363 6.363 16 C -0.083 4.083 17 N -0.332 5.332 18 C -0.031 4.031 19 C -0.094 4.094 20 C -0.091 4.091 21 C -0.087 4.087 22 C -0.011 4.011 23 C -0.035 4.035 24 N -0.132 5.132 25 C -0.135 4.135 26 C 0.080 3.920 27 F -0.121 7.121 28 H 0.102 0.898 29 H 0.071 0.929 30 H 0.030 0.970 31 H 0.020 0.980 32 H -0.025 1.025 33 H 0.072 0.928 34 H 0.044 0.956 35 H 0.118 0.882 36 H 0.228 0.772 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.172 0.828 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.195 0.805 43 H 0.186 0.814 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 8.891 -22.517 -9.504 26.008 hybrid contribution -1.270 0.960 -0.437 1.651 sum 7.621 -21.557 -9.941 24.932 Atomic orbital electron populations 1.22249 0.87516 1.01787 0.99383 1.61938 1.07836 1.14939 1.41809 1.19359 0.93620 0.84086 0.94588 1.21493 1.34616 0.97380 1.02483 0.91989 1.25943 0.95132 0.98197 1.00702 1.70093 1.39455 1.11872 1.36196 0.85392 0.78976 0.77263 0.79047 1.20100 1.20714 1.18621 1.22803 0.97127 0.98689 0.91694 1.21664 0.93822 0.93001 0.84989 0.92497 1.86665 1.73890 1.36963 1.38776 1.22432 0.88605 0.99524 0.97711 1.60214 1.18987 1.48179 1.05772 1.20902 0.89920 0.97932 0.94385 1.20319 0.95209 0.93882 1.00040 1.21249 0.97234 0.94561 0.96036 1.21531 0.91022 0.99964 0.96172 1.15698 0.85640 0.94020 1.05760 1.25710 0.92558 0.92642 0.92566 1.81310 1.12628 1.09027 1.10208 1.21162 0.95691 0.96518 1.00101 1.17520 0.93341 0.79538 1.01555 1.91539 1.93767 1.37261 1.89524 0.89833 0.92871 0.97023 0.98048 1.02483 0.92787 0.95615 0.88199 0.77249 0.90696 0.91642 0.82761 0.90502 0.90399 0.80538 0.81424 0.83515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.44 9.37 127.69 1.20 2.64 16 2 N -0.54 -22.97 4.56 -927.05 -4.22 -27.19 16 3 C 0.21 11.44 4.55 85.56 0.39 11.83 16 4 C -0.52 -30.41 8.39 25.60 0.21 -30.19 16 5 H 0.06 3.55 7.17 -2.91 -0.02 3.53 16 6 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 7 N -0.94 -57.95 13.29 21.45 0.28 -57.66 16 8 Si 0.97 45.50 29.54 68.60 2.03 47.52 16 9 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 12 C 0.03 0.83 4.66 86.30 0.40 1.23 16 13 C 0.13 3.83 3.30 30.59 0.10 3.93 16 14 H 0.06 2.37 6.78 -2.39 -0.02 2.35 16 15 O -0.56 -16.51 12.55 -148.98 -1.87 -18.38 16 16 C 0.05 0.97 5.39 86.30 0.47 1.44 16 17 N -0.70 -14.07 6.49 -517.95 -3.36 -17.43 16 18 C 0.10 1.33 5.49 85.55 0.47 1.80 16 19 C -0.09 -1.21 5.40 -19.76 -0.11 -1.32 16 20 C -0.07 -0.48 9.65 22.22 0.21 -0.27 16 21 C -0.07 -0.47 9.75 22.54 0.22 -0.25 16 22 C -0.01 -0.09 5.73 -21.37 -0.12 -0.21 16 23 C 0.28 4.64 15.33 88.33 1.35 5.99 16 24 N -0.46 -10.06 18.54 19.00 0.35 -9.71 16 25 C -0.11 -1.70 9.74 22.59 0.22 -1.48 16 26 C 0.10 1.80 7.24 22.34 0.16 1.96 16 27 F -0.14 -3.49 16.74 44.97 0.75 -2.74 16 28 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 29 H 0.05 2.21 6.67 -2.39 -0.02 2.19 16 30 H 0.01 0.41 8.13 -2.39 -0.02 0.39 16 31 H 0.00 0.09 6.63 -2.39 -0.02 0.07 16 32 H -0.04 -2.51 8.12 -2.39 -0.02 -2.53 16 33 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 34 H 0.03 0.87 8.00 -2.39 -0.02 0.85 16 35 H 0.10 2.38 7.94 -2.39 -0.02 2.37 16 36 H 0.38 7.32 9.05 -74.05 -0.67 6.65 16 37 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 39 H 0.35 6.79 8.11 -89.69 -0.73 6.06 16 40 H 0.08 1.22 8.07 -2.39 -0.02 1.20 16 41 H 0.08 0.59 7.94 -2.38 -0.02 0.57 16 42 H 0.18 0.01 7.99 -2.91 -0.02 -0.01 16 43 H 0.17 0.29 8.06 -2.91 -0.02 0.27 16 44 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -77.05 381.89 -0.76 -77.80 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -0.36 Total: 10.37 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: 5.64 Total: -2.58 kcal Atomic # 7 Polarization: -105.05 SS G_CDS: -6.95 Total: -112.00 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -1.87 Total: -18.38 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.75 Total: -2.74 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.52 kcal Total: -77.05 -0.76 -77.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591733991.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.084 kcal (2) G-P(sol) polarization free energy of solvation -77.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds