Wall clock time and date at job start Fri Apr 10 2020 18:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40081 * 126.09848 * 2 1 4 4 C 1.30848 * 108.42034 * 179.75484 * 3 2 1 5 5 C 1.39694 * 108.46163 * 0.44991 * 4 3 2 6 6 C 1.35853 * 126.09925 * 180.02562 * 2 1 3 7 7 N 1.39198 * 126.27170 * 359.95870 * 6 2 1 8 8 C 1.34782 * 120.00206 * 179.97438 * 7 6 2 9 9 O 1.21391 * 119.99731 * 359.97438 * 8 7 6 10 10 C 1.49308 * 120.00210 * 180.02562 * 8 7 6 11 11 O 1.21374 * 119.99860 * 353.50537 * 10 8 7 12 12 N 1.34776 * 120.00003 * 173.50358 * 10 8 7 13 13 C 1.47078 * 120.87685 * 181.19835 * 12 10 8 14 14 C 1.53698 * 108.27171 * 128.76022 * 13 12 10 15 15 N 1.46901 * 109.26140 * 54.08139 * 14 13 12 16 16 C 1.46898 * 110.99914 * 172.60881 * 15 14 13 17 17 C 1.50698 * 109.46979 * 294.29459 * 16 15 14 18 18 H 1.08000 * 120.00229 * 0.02562 * 17 16 15 19 19 C 1.37880 * 120.00004 * 180.02562 * 17 16 15 20 20 N 1.31518 * 119.99570 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00208 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47042 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47095 * 120.00374 * 21 19 17 24 24 H 1.48494 * 109.47029 * 240.00097 * 21 19 17 25 25 C 1.46897 * 111.26583 * 296.75662 * 15 14 13 26 26 C 1.47075 * 120.88161 * 1.47917 * 12 10 8 27 27 H 1.09007 * 109.46422 * 269.95179 * 1 2 3 28 28 H 1.08997 * 109.47376 * 29.94748 * 1 2 3 29 29 H 1.08997 * 109.47384 * 149.95321 * 1 2 3 30 30 H 1.08001 * 125.77120 * 180.27622 * 4 3 2 31 31 H 1.07996 * 126.07461 * 179.81250 * 5 4 3 32 32 H 0.96998 * 120.00058 * 359.97438 * 7 6 2 33 33 H 1.09000 * 109.62767 * 248.52331 * 13 12 10 34 34 H 1.08998 * 109.63609 * 9.10735 * 13 12 10 35 35 H 1.08998 * 109.65062 * 294.07446 * 14 13 12 36 36 H 1.09004 * 109.42093 * 173.94792 * 14 13 12 37 37 H 1.08995 * 109.47300 * 54.30434 * 16 15 14 38 38 H 1.09002 * 109.46473 * 174.30265 * 16 15 14 39 39 H 0.97005 * 119.99462 * 180.02562 * 20 19 17 40 40 H 1.09004 * 109.49352 * 303.14262 * 25 15 14 41 41 H 1.08995 * 109.49101 * 183.06173 * 25 15 14 42 42 H 1.08999 * 109.62773 * 350.89799 * 26 12 10 43 43 H 1.08999 * 109.62675 * 111.47203 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2903 1.1319 0.0000 4 6 3.5370 0.7345 0.0053 5 6 3.5561 -0.6623 -0.0015 6 6 2.2654 -1.0977 -0.0005 7 7 1.8438 -2.4243 -0.0003 8 6 2.7521 -3.4201 -0.0013 9 8 3.9379 -3.1600 -0.0030 10 6 2.3000 -4.8431 -0.0017 11 8 1.1209 -5.1052 0.1179 12 7 3.2010 -5.8364 -0.1348 13 6 2.7743 -7.2437 -0.1640 14 6 3.3988 -7.9111 -1.3996 15 7 4.8530 -7.7039 -1.3793 16 6 5.5091 -8.4720 -2.4458 17 6 5.3459 -9.9458 -2.1766 18 1 4.8082 -10.2785 -1.3010 19 6 5.8831 -10.8694 -3.0480 20 7 6.5383 -10.4642 -4.1139 21 14 5.6802 -12.6962 -2.7147 22 1 4.9082 -12.8878 -1.4607 23 1 4.9526 -13.3277 -3.8447 24 1 7.0179 -13.3252 -2.5740 25 6 5.1892 -6.2771 -1.4750 26 6 4.6376 -5.5423 -0.2486 27 1 -0.3632 -0.0009 1.0278 28 1 -0.3634 0.8904 -0.5130 29 1 -0.3634 -0.8895 -0.5145 30 1 4.4046 1.3777 0.0109 31 1 4.4376 -1.2862 -0.0023 32 1 0.8964 -2.6321 0.0006 33 1 3.1150 -7.7484 0.7401 34 1 1.6874 -7.2956 -0.2282 35 1 2.9812 -7.4702 -2.3048 36 1 3.1834 -8.9795 -1.3822 37 1 5.0533 -8.2251 -3.4046 38 1 6.5699 -8.2230 -2.4729 39 1 6.9159 -11.1140 -4.7272 40 1 4.7466 -5.8589 -2.3791 41 1 6.2723 -6.1604 -1.5122 42 1 4.7831 -4.4688 -0.3687 43 1 5.1539 -5.8866 0.6474 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602077415.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:18 Heat of formation + Delta-G solvation = 35.694512 kcal Electronic energy + Delta-G solvation = -26966.805286 eV Core-core repulsion = 23049.729752 eV Total energy + Delta-G solvation = -3917.075534 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.84554 -41.80330 -40.07288 -39.09687 -36.80141 -35.75354 -34.39958 -34.07266 -32.19914 -30.61481 -30.09137 -27.75171 -27.61481 -26.15364 -24.66037 -23.80872 -22.99053 -22.14361 -21.34190 -20.66344 -19.28977 -18.56061 -18.27547 -18.05429 -17.52368 -16.94071 -16.63177 -16.55912 -16.14772 -15.98576 -15.72754 -15.52560 -15.33947 -15.13548 -14.80318 -14.35356 -14.29782 -14.09933 -13.74115 -13.62866 -13.32634 -13.11548 -12.83078 -12.75459 -12.58933 -12.42146 -12.34299 -12.22148 -12.11455 -11.76832 -11.72115 -11.33876 -10.63413 -10.33297 -10.04914 -9.98051 -9.31412 -9.07986 -8.20448 -6.30465 -0.16033 0.60381 0.88572 1.42617 1.43687 1.56659 1.58341 1.75617 2.00576 2.20556 2.41165 2.88766 3.12172 3.24220 3.57154 3.89822 4.00586 4.07403 4.19564 4.23088 4.34125 4.35112 4.41741 4.45219 4.55196 4.60521 4.66165 4.82456 4.91934 4.96385 4.99190 5.07040 5.11325 5.21428 5.31063 5.61884 5.64649 5.71969 5.88249 6.00821 6.04123 6.26190 6.40649 6.56392 6.61917 6.65216 6.85615 7.39541 8.90957 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.031081 B = 0.002447 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.655318 B =11440.511616 C =11976.460993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.390 5.390 3 N -0.310 5.310 4 C 0.060 3.940 5 C -0.290 4.290 6 C 0.290 3.710 7 N -0.607 5.607 8 C 0.526 3.474 9 O -0.479 6.479 10 C 0.516 3.484 11 O -0.539 6.539 12 N -0.570 5.570 13 C 0.123 3.877 14 C 0.054 3.946 15 N -0.541 5.541 16 C 0.208 3.792 17 C -0.521 4.521 18 H 0.068 0.932 19 C 0.000 4.000 20 N -0.936 5.936 21 Si 0.970 3.030 22 H -0.260 1.260 23 H -0.281 1.281 24 H -0.280 1.280 25 C 0.040 3.960 26 C 0.072 3.928 27 H 0.091 0.909 28 H 0.104 0.896 29 H 0.101 0.899 30 H 0.216 0.784 31 H 0.169 0.831 32 H 0.432 0.568 33 H 0.093 0.907 34 H 0.104 0.896 35 H 0.015 0.985 36 H 0.087 0.913 37 H -0.041 1.041 38 H 0.008 0.992 39 H 0.264 0.736 40 H 0.017 0.983 41 H 0.085 0.915 42 H 0.160 0.840 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.775 19.893 10.241 25.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.178 5.178 3 N -0.133 5.133 4 C -0.125 4.125 5 C -0.321 4.321 6 C 0.070 3.930 7 N -0.257 5.257 8 C 0.309 3.691 9 O -0.353 6.353 10 C 0.297 3.703 11 O -0.418 6.418 12 N -0.302 5.302 13 C 0.001 3.999 14 C -0.075 4.075 15 N -0.266 5.266 16 C 0.082 3.918 17 C -0.559 4.559 18 H 0.086 0.914 19 C -0.198 4.198 20 N -0.576 5.576 21 Si 0.794 3.206 22 H -0.184 1.184 23 H -0.207 1.207 24 H -0.206 1.206 25 C -0.089 4.089 26 C -0.049 4.049 27 H 0.110 0.890 28 H 0.123 0.877 29 H 0.120 0.880 30 H 0.233 0.767 31 H 0.187 0.813 32 H 0.272 0.728 33 H 0.111 0.889 34 H 0.122 0.878 35 H 0.033 0.967 36 H 0.105 0.895 37 H -0.023 1.023 38 H 0.026 0.974 39 H 0.073 0.927 40 H 0.036 0.964 41 H 0.104 0.896 42 H 0.176 0.824 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.243 20.626 10.604 26.226 hybrid contribution 0.037 -1.669 -1.257 2.090 sum -12.207 18.958 9.346 24.408 Atomic orbital electron populations 1.22246 0.72058 1.06142 1.05037 1.49008 1.07648 1.01314 1.59875 1.77427 1.02655 1.06235 1.26958 1.24256 0.95742 0.94886 0.97595 1.21849 0.95819 0.95808 1.18672 1.18133 0.91605 0.80108 1.03151 1.42233 1.12108 1.01364 1.69955 1.20078 0.85670 0.86281 0.77099 1.90353 1.16177 1.82384 1.46374 1.19520 0.85845 0.85698 0.79189 1.90763 1.16560 1.84015 1.50419 1.48184 1.08495 1.06379 1.67153 1.22052 1.00733 0.78356 0.98782 1.22400 0.87966 1.01463 0.95699 1.62056 1.08563 1.07559 1.48396 1.19380 0.92848 0.93067 0.86536 1.21494 1.34616 0.91265 1.08534 0.91366 1.25927 0.94830 1.04271 0.94735 1.70099 1.37542 1.35924 1.14051 0.85325 0.77952 0.78864 0.78426 1.18376 1.20691 1.20618 1.22511 1.01319 0.88277 0.96754 1.23350 0.77466 1.05818 0.98226 0.89033 0.87729 0.88021 0.76747 0.81336 0.72768 0.88899 0.87761 0.96696 0.89499 1.02288 0.97403 0.92738 0.96434 0.89644 0.82412 0.89588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.74 11.30 127.77 1.44 2.18 16 2 N -0.39 -6.91 4.04 -366.13 -1.48 -8.39 16 3 N -0.31 -6.43 12.56 -57.13 -0.72 -7.15 16 4 C 0.06 1.11 12.00 85.19 1.02 2.14 16 5 C -0.29 -6.13 9.65 22.15 0.21 -5.92 16 6 C 0.29 5.76 7.68 131.25 1.01 6.77 16 7 N -0.61 -10.83 5.40 -309.57 -1.67 -12.51 16 8 C 0.53 11.58 7.77 87.22 0.68 12.26 16 9 O -0.48 -11.51 10.16 -3.37 -0.03 -11.54 16 10 C 0.52 12.92 7.77 87.23 0.68 13.59 16 11 O -0.54 -14.55 15.95 -3.32 -0.05 -14.61 16 12 N -0.57 -15.54 3.00 -818.80 -2.46 -18.00 16 13 C 0.12 3.50 6.62 86.50 0.57 4.07 16 14 C 0.05 1.96 5.47 86.54 0.47 2.44 16 15 N -0.54 -22.33 4.62 -898.89 -4.15 -26.49 16 16 C 0.21 10.81 4.72 85.56 0.40 11.21 16 17 C -0.52 -28.57 8.41 25.60 0.22 -28.35 16 18 H 0.07 3.62 7.13 -2.91 -0.02 3.60 16 19 C 0.00 0.02 5.46 84.65 0.46 0.48 16 20 N -0.94 -55.66 13.29 21.45 0.28 -55.37 16 21 Si 0.97 43.32 29.54 68.60 2.03 45.35 16 22 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 23 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 24 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 25 C 0.04 1.38 5.62 86.38 0.49 1.87 16 26 C 0.07 1.96 6.35 86.35 0.55 2.51 16 27 H 0.09 0.55 8.14 -2.38 -0.02 0.53 16 28 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.10 0.47 7.52 -2.39 -0.02 0.46 16 30 H 0.22 2.40 8.06 -2.91 -0.02 2.37 16 31 H 0.17 3.76 5.83 -2.91 -0.02 3.74 16 32 H 0.43 5.79 7.48 -92.71 -0.69 5.09 16 33 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 34 H 0.10 2.75 7.07 -2.39 -0.02 2.74 16 35 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.09 3.40 6.67 -2.38 -0.02 3.38 16 37 H -0.04 -2.32 8.12 -2.39 -0.02 -2.34 16 38 H 0.01 0.44 7.97 -2.39 -0.02 0.42 16 39 H 0.26 14.75 8.31 -92.70 -0.77 13.98 16 40 H 0.02 0.63 8.14 -2.38 -0.02 0.61 16 41 H 0.09 2.89 7.99 -2.39 -0.02 2.87 16 42 H 0.16 4.01 3.92 -75.67 -0.30 3.71 16 43 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -69.86 353.60 0.02 -69.83 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: 0.07 Total: 13.62 kcal Atomic # 6 Polarization: 17.05 SS G_CDS: 8.20 Total: 25.25 kcal Atomic # 7 Polarization: -117.71 SS G_CDS: -10.19 Total: -127.90 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.09 Total: -26.15 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -69.86 0.02 -69.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602077415.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.528 kcal (2) G-P(sol) polarization free energy of solvation -69.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds