Wall clock time and date at job start Fri Apr 10 2020 18:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.47132 * 2 1 4 4 C 1.50696 * 109.46865 * 119.99896 * 2 1 3 5 5 H 1.07999 * 120.00165 * 120.00143 * 4 2 1 6 6 C 1.37878 * 120.00101 * 299.99782 * 4 2 1 7 7 N 1.31518 * 120.00137 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00324 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.46982 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47249 * 119.99896 * 8 6 4 11 11 H 1.48497 * 109.47245 * 240.00253 * 8 6 4 12 12 N 1.46902 * 109.46968 * 239.99757 * 2 1 3 13 13 C 1.46901 * 111.00032 * 85.00435 * 12 2 1 14 14 C 1.52995 * 109.47220 * 179.97438 * 13 12 2 15 15 N 1.46501 * 109.47360 * 179.97438 * 14 13 12 16 16 C 1.34723 * 126.50421 * 264.69037 * 15 14 13 17 17 N 1.30872 * 109.71129 * 180.26051 * 16 15 14 18 18 C 1.33541 * 109.80529 * 0.02562 * 17 16 15 19 19 C 1.38055 * 126.50266 * 84.99827 * 15 14 13 20 20 C 1.41156 * 134.58888 * 359.73770 * 19 15 14 21 21 O 1.21789 * 120.39105 * 0.02562 * 20 19 15 22 22 N 1.34936 * 119.21989 * 179.97438 * 20 19 15 23 23 C 1.46501 * 119.50220 * 179.97438 * 22 20 19 24 24 C 1.34415 * 120.99428 * 0.02562 * 22 20 19 25 25 O 1.21600 * 119.16661 * 179.97438 * 24 22 20 26 26 N 1.34638 * 121.66408 * 359.97438 * 24 22 20 27 27 C 1.46497 * 119.94776 * 180.02562 * 26 24 22 28 28 H 1.09004 * 109.47132 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47425 * 300.00381 * 1 2 3 30 30 H 1.09005 * 109.47060 * 60.00179 * 1 2 3 31 31 H 0.96993 * 120.00255 * 179.97438 * 7 6 4 32 32 H 1.00904 * 110.99579 * 208.95753 * 12 2 1 33 33 H 1.08999 * 109.47476 * 59.99467 * 13 12 2 34 34 H 1.09001 * 109.46523 * 299.99695 * 13 12 2 35 35 H 1.08999 * 109.47270 * 59.99416 * 14 13 12 36 36 H 1.09004 * 109.46887 * 300.00068 * 14 13 12 37 37 H 1.08001 * 125.14957 * 0.20876 * 16 15 14 38 38 H 1.09006 * 109.46878 * 90.00297 * 23 22 20 39 39 H 1.08992 * 109.47488 * 210.00213 * 23 22 20 40 40 H 1.09003 * 109.47426 * 330.00762 * 23 22 20 41 41 H 1.08992 * 109.47390 * 0.02562 * 27 26 24 42 42 H 1.09009 * 109.47012 * 120.00713 * 27 26 24 43 43 H 1.09001 * 109.47057 * 240.00164 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9428 0.8298 2.6034 8 14 2.3224 -1.1194 4.0080 9 1 3.1473 -2.2863 3.6039 10 1 3.1472 -0.1856 4.8161 11 1 1.1677 -1.5864 4.8165 12 7 2.0197 -0.6926 -1.1994 13 6 2.0826 0.2225 -2.3469 14 6 2.5963 -0.5330 -3.5741 15 7 2.6584 0.3794 -4.7187 16 6 1.7140 0.5429 -5.6655 17 7 2.1112 1.4363 -6.5354 18 6 3.3208 1.8902 -6.1977 19 6 3.6984 1.2305 -5.0349 20 6 4.9502 1.5246 -4.4527 21 8 5.3040 0.9589 -3.4339 22 7 5.7507 2.4391 -5.0389 23 6 7.0511 2.7494 -4.4397 24 6 5.3727 3.0704 -6.1638 25 8 6.1200 3.8890 -6.6637 26 7 4.1873 2.8192 -6.7509 27 6 3.8135 3.5288 -7.9768 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.7081 1.1610 3.4843 32 1 2.9173 -1.1206 -1.0286 33 1 2.7589 1.0461 -2.1183 34 1 1.0871 0.6162 -2.5525 35 1 1.9203 -1.3568 -3.8029 36 1 3.5918 -0.9264 -3.3682 37 1 0.7721 0.0157 -5.7017 38 1 7.8096 2.0846 -4.8530 39 1 7.3153 3.7836 -4.6602 40 1 6.9960 2.6108 -3.3599 41 1 4.6139 4.2125 -8.2593 42 1 3.6514 2.8083 -8.7786 43 1 2.8970 4.0932 -7.8047 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602868668.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:25 Heat of formation + Delta-G solvation = 30.313348 kcal Electronic energy + Delta-G solvation = -27416.899292 eV Core-core repulsion = 23499.590413 eV Total energy + Delta-G solvation = -3917.308879 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.23192 -41.30161 -39.23377 -36.94525 -36.20671 -35.45291 -34.20667 -32.43634 -30.99068 -29.56247 -28.03496 -27.06790 -26.72797 -25.25465 -24.03833 -23.49068 -22.47122 -21.27163 -19.96969 -19.51689 -18.54721 -17.53455 -17.34880 -16.63035 -16.23352 -15.91852 -15.54662 -15.46529 -15.11777 -15.06337 -14.61490 -14.50261 -14.12285 -13.71210 -13.37070 -13.31998 -13.10838 -12.71012 -12.55990 -12.51894 -12.32395 -11.60551 -11.36173 -11.27287 -11.04782 -10.83038 -10.76518 -10.68993 -10.36720 -10.29312 -10.22271 -10.14487 -10.01272 -9.73356 -8.91454 -8.55253 -8.34564 -7.50833 -6.09205 -4.16088 0.73388 1.46833 1.76090 2.32389 2.42610 2.66517 3.24906 3.25414 3.33350 3.37403 3.79137 4.20796 4.33618 4.39377 4.65280 4.90159 4.97070 5.05361 5.09979 5.15048 5.17287 5.22242 5.32431 5.39247 5.42626 5.44408 5.48494 5.56591 5.82786 6.00718 6.14384 6.25559 6.67100 6.75857 6.96205 7.02181 7.10183 7.26472 7.32205 7.35592 7.70185 7.71410 7.78046 8.14825 8.21926 8.51062 8.92498 9.50214 10.97313 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.018603 B = 0.003039 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.789539 B = 9212.434190 C =10122.069167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.213 3.787 3 H 0.002 0.998 4 C -0.520 4.520 5 H 0.062 0.938 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.683 5.683 13 C 0.051 3.949 14 C 0.102 3.898 15 N -0.399 5.399 16 C 0.266 3.734 17 N -0.501 5.501 18 C 0.307 3.693 19 C -0.147 4.147 20 C 0.590 3.410 21 O -0.500 6.500 22 N -0.553 5.553 23 C 0.085 3.915 24 C 0.710 3.290 25 O -0.543 6.543 26 N -0.511 5.511 27 C 0.089 3.911 28 H 0.033 0.967 29 H 0.082 0.918 30 H 0.003 0.997 31 H 0.261 0.739 32 H 0.335 0.665 33 H 0.030 0.970 34 H 0.070 0.930 35 H 0.111 0.889 36 H 0.101 0.899 37 H 0.230 0.770 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.100 0.900 42 H 0.077 0.923 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.964 2.253 -20.330 21.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.106 3.894 3 H 0.019 0.981 4 C -0.558 4.558 5 H 0.080 0.920 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.315 5.315 13 C -0.080 4.080 14 C -0.019 4.019 15 N -0.079 5.079 16 C -0.017 4.017 17 N -0.225 5.225 18 C 0.075 3.925 19 C -0.265 4.265 20 C 0.383 3.617 21 O -0.374 6.374 22 N -0.298 5.298 23 C -0.056 4.056 24 C 0.412 3.588 25 O -0.417 6.417 26 N -0.239 5.239 27 C -0.053 4.053 28 H 0.052 0.948 29 H 0.101 0.899 30 H 0.022 0.978 31 H 0.071 0.929 32 H 0.152 0.848 33 H 0.048 0.952 34 H 0.089 0.911 35 H 0.129 0.871 36 H 0.120 0.880 37 H 0.246 0.754 38 H 0.093 0.907 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.118 0.882 42 H 0.095 0.905 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.501 2.453 -20.586 21.214 hybrid contribution 1.228 -0.147 1.756 2.148 sum 5.729 2.306 -18.829 19.816 Atomic orbital electron populations 1.21728 0.97680 0.99435 0.99441 1.19120 0.92651 0.92415 0.85183 0.98054 1.21264 1.31611 1.12643 0.90312 0.92017 1.24924 0.94972 0.94973 0.99141 1.69900 1.36543 1.22863 1.23504 0.86437 0.78623 0.79618 0.82717 1.19679 1.21039 1.20926 1.60774 1.32281 1.32489 1.05938 1.22136 1.00208 0.94882 0.90766 1.22321 1.05250 0.90971 0.83396 1.45008 1.12269 1.29198 1.21380 1.25324 0.95570 0.96318 0.84492 1.69665 1.09602 1.14470 1.28749 1.18072 0.91099 0.92273 0.91031 1.18805 0.96409 1.07937 1.03382 1.15504 0.82878 0.79382 0.83886 1.90946 1.74755 1.49135 1.22559 1.45803 1.20882 1.38556 1.24553 1.21944 0.80216 1.03350 1.00086 1.15424 0.81139 0.81645 0.80544 1.90997 1.51068 1.35797 1.63812 1.43749 1.14431 1.38501 1.27265 1.21957 1.02601 0.97521 0.83176 0.94784 0.89950 0.97816 0.92888 0.84800 0.95180 0.91130 0.87059 0.88036 0.75390 0.90712 0.88717 0.88592 0.88156 0.90458 0.90393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.99 9.19 37.16 0.34 -2.65 16 2 C 0.21 5.28 2.60 -68.86 -0.18 5.10 16 3 H 0.00 0.05 7.80 -51.93 -0.40 -0.36 16 4 C -0.52 -14.03 8.59 -34.44 -0.30 -14.33 16 5 H 0.06 1.64 7.62 -52.49 -0.40 1.24 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -25.20 11.32 55.43 0.63 -24.57 16 8 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 9 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 N -0.68 -13.64 6.30 -107.95 -0.68 -14.32 16 13 C 0.05 0.85 5.81 -3.83 -0.02 0.83 16 14 C 0.10 1.27 6.13 -4.04 -0.02 1.25 16 15 N -0.40 -4.83 2.78 -115.75 -0.32 -5.16 16 16 C 0.27 2.61 12.49 -90.36 -1.13 1.48 16 17 N -0.50 -5.84 11.20 -13.39 -0.15 -5.99 16 18 C 0.31 3.93 7.69 -154.55 -1.19 2.74 16 19 C -0.15 -2.05 6.90 -83.70 -0.58 -2.63 16 20 C 0.59 8.78 7.44 -15.08 -0.11 8.67 16 21 O -0.50 -8.59 15.72 5.11 0.08 -8.51 16 22 N -0.55 -7.25 2.96 -131.63 -0.39 -7.64 16 23 C 0.08 0.88 10.09 59.85 0.60 1.48 16 24 C 0.71 9.27 8.12 -87.37 -0.71 8.56 16 25 O -0.54 -7.62 15.01 5.28 0.08 -7.54 16 26 N -0.51 -6.10 3.06 -128.31 -0.39 -6.49 16 27 C 0.09 0.76 10.63 59.85 0.64 1.39 16 28 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.08 2.18 6.07 -51.93 -0.32 1.87 16 30 H 0.00 0.06 7.45 -51.93 -0.39 -0.33 16 31 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.33 6.64 8.22 -39.29 -0.32 6.32 16 33 H 0.03 0.58 8.06 -51.93 -0.42 0.16 16 34 H 0.07 1.17 7.44 -51.93 -0.39 0.79 16 35 H 0.11 1.10 8.13 -51.93 -0.42 0.67 16 36 H 0.10 1.37 7.51 -51.93 -0.39 0.98 16 37 H 0.23 1.19 8.06 -52.49 -0.42 0.77 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.09 0.89 7.34 -51.93 -0.38 0.51 16 40 H 0.10 1.01 7.40 -51.93 -0.38 0.63 16 41 H 0.10 0.82 6.85 -51.93 -0.36 0.47 16 42 H 0.08 0.56 8.14 -51.92 -0.42 0.14 16 43 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 359.00 15.07 5.41 5.41 Total: -1.00 -32.95 359.00 -9.33 -42.27 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -5.82 Total: 2.99 kcal Atomic # 6 Polarization: 16.25 SS G_CDS: -2.75 Total: 13.50 kcal Atomic # 7 Polarization: -62.87 SS G_CDS: -1.31 Total: -64.17 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: 0.16 Total: -16.05 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.95 -9.33 -42.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602868668.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.586 kcal (2) G-P(sol) polarization free energy of solvation -32.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds