Wall clock time and date at job start Fri Apr 10 2020 18:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35588 * 117.00420 * 2 1 4 4 N 1.32697 * 120.54341 * 0.02562 * 3 2 1 5 5 C 1.31834 * 120.78676 * 179.97438 * 4 3 2 6 6 N 1.31735 * 121.96301 * 0.03077 * 5 4 3 7 7 C 1.32489 * 121.02043 * 359.96611 * 6 5 4 8 8 C 1.38781 * 119.09143 * 359.75583 * 7 6 5 9 9 N 1.40203 * 120.88858 * 180.26968 * 8 7 6 10 10 C 1.34783 * 119.99767 * 24.44991 * 9 8 7 11 11 O 1.21590 * 119.99784 * 5.78987 * 10 9 8 12 12 N 1.34775 * 119.99917 * 185.78896 * 10 9 8 13 13 C 1.47080 * 120.88000 * 4.99828 * 12 10 9 14 14 C 1.53700 * 108.27646 * 128.75568 * 13 12 10 15 15 N 1.46891 * 109.25704 * 54.07869 * 14 13 12 16 16 C 1.46904 * 111.00019 * 172.60887 * 15 14 13 17 17 C 1.50701 * 109.47026 * 294.30407 * 16 15 14 18 18 H 1.08004 * 119.99762 * 359.97438 * 17 16 15 19 19 C 1.37870 * 119.99974 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00076 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 120.00162 * 359.97438 * 19 17 16 22 22 H 1.48506 * 109.47012 * 90.00316 * 21 19 17 23 23 H 1.48502 * 109.47397 * 210.00287 * 21 19 17 24 24 H 1.48497 * 109.46896 * 330.00522 * 21 19 17 25 25 C 1.46895 * 111.27217 * 296.75519 * 15 14 13 26 26 C 1.47081 * 120.88293 * 185.27316 * 12 10 9 27 27 H 1.08997 * 109.47235 * 59.99484 * 1 2 3 28 28 H 1.08994 * 109.47490 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47275 * 299.99903 * 1 2 3 30 30 H 1.08005 * 119.01521 * 179.97438 * 5 4 3 31 31 H 1.08002 * 120.44895 * 180.02562 * 7 6 5 32 32 H 0.96996 * 120.00413 * 204.44727 * 9 8 7 33 33 H 1.09001 * 109.62666 * 248.52177 * 13 12 10 34 34 H 1.09002 * 109.63163 * 9.10053 * 13 12 10 35 35 H 1.09000 * 109.64561 * 294.07284 * 14 13 12 36 36 H 1.08997 * 109.44152 * 173.95937 * 14 13 12 37 37 H 1.09001 * 109.46976 * 54.30153 * 16 15 14 38 38 H 1.08996 * 109.47132 * 174.30368 * 16 15 14 39 39 H 0.97005 * 120.00323 * 179.97438 * 20 19 17 40 40 H 1.09001 * 109.49565 * 303.15123 * 25 15 14 41 41 H 1.09004 * 109.49557 * 183.06426 * 25 15 14 42 42 H 1.09010 * 109.62287 * 350.89859 * 26 12 10 43 43 H 1.09000 * 109.62618 * 111.47440 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2081 0.0000 4 7 1.3326 2.3278 0.0005 5 6 1.9262 3.5049 0.0010 6 7 3.2381 3.6244 0.0004 7 6 4.0210 2.5555 0.0000 8 6 3.4414 1.2946 0.0053 9 7 4.2340 0.1381 0.0107 10 6 5.4913 0.1851 0.4941 11 8 5.9024 1.2008 1.0212 12 7 6.2928 -0.8937 0.3932 13 6 5.8552 -2.0937 -0.3359 14 6 6.9526 -2.4728 -1.3430 15 7 8.2330 -2.6087 -0.6360 16 6 9.2729 -3.1398 -1.5274 17 6 8.9221 -4.5508 -1.9237 18 1 8.0174 -5.0076 -1.5503 19 6 9.7567 -5.2591 -2.7621 20 7 9.4503 -6.4902 -3.1083 21 14 11.3218 -4.4694 -3.4073 22 1 12.4390 -4.7458 -2.4688 23 1 11.6462 -5.0324 -4.7426 24 1 11.1243 -3.0022 -3.5233 25 6 8.6513 -1.3325 -0.0409 26 6 7.6260 -0.9044 1.0144 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.3187 4.3980 0.0010 31 1 5.0956 2.6642 -0.0001 32 1 3.8776 -0.6958 -0.3334 33 1 5.6999 -2.9126 0.3666 34 1 4.9269 -1.8817 -0.8664 35 1 7.0372 -1.6957 -2.1026 36 1 6.6973 -3.4199 -1.8184 37 1 9.3388 -2.5175 -2.4199 38 1 10.2321 -3.1356 -1.0098 39 1 10.0373 -6.9884 -3.6985 40 1 8.7123 -0.5712 -0.8186 41 1 9.6278 -1.4527 0.4284 42 1 7.8690 0.0945 1.3770 43 1 7.6376 -1.6111 1.8442 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602890215.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:27 Heat of formation + Delta-G solvation = -5.726059 kcal Electronic energy + Delta-G solvation = -27092.894193 eV Core-core repulsion = 23174.022529 eV Total energy + Delta-G solvation = -3918.871665 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.67928 -41.44246 -39.54733 -39.27173 -36.45625 -36.11404 -34.47589 -34.17057 -32.33830 -31.35437 -30.27394 -28.53615 -27.40044 -25.42261 -24.92656 -24.68366 -23.47206 -22.28755 -20.92901 -20.00759 -19.74431 -18.93585 -18.52635 -18.39130 -17.39065 -16.79487 -16.61813 -16.44757 -16.26630 -16.03511 -15.77887 -15.56112 -15.30499 -15.29592 -15.04337 -14.64219 -14.49310 -14.35198 -13.66836 -13.22518 -13.07086 -12.92059 -12.74539 -12.55146 -12.46750 -12.36540 -12.27159 -12.23495 -11.96187 -11.84083 -11.41462 -11.39519 -11.17280 -10.76950 -10.46791 -9.95427 -9.28093 -9.05198 -8.27313 -6.30170 -0.22369 -0.03532 1.24917 1.35962 1.37388 1.46699 1.73332 1.82429 2.34739 2.52613 2.70510 2.98590 3.05207 3.13947 3.26037 3.64112 3.73554 3.90206 4.01598 4.12415 4.22999 4.39016 4.39385 4.41762 4.45780 4.51785 4.72720 4.75318 4.80069 4.84425 4.92703 4.94498 5.00890 5.11508 5.28015 5.30240 5.53132 5.63206 5.71331 5.95842 5.98430 6.29147 6.56213 6.61313 6.76395 6.97257 7.19251 7.33670 8.88545 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.021511 B = 0.002732 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.377178 B =10246.960761 C =10912.392918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.310 6.310 3 C 0.334 3.666 4 N -0.556 5.556 5 C 0.306 3.694 6 N -0.534 5.534 7 C 0.151 3.849 8 C 0.045 3.955 9 N -0.659 5.659 10 C 0.709 3.291 11 O -0.604 6.604 12 N -0.617 5.617 13 C 0.122 3.878 14 C 0.052 3.948 15 N -0.538 5.538 16 C 0.171 3.829 17 C -0.513 4.513 18 H 0.047 0.953 19 C 0.011 3.989 20 N -0.945 5.945 21 Si 0.941 3.059 22 H -0.266 1.266 23 H -0.285 1.285 24 H -0.255 1.255 25 C 0.040 3.960 26 C 0.141 3.859 27 H 0.065 0.935 28 H 0.126 0.874 29 H 0.063 0.937 30 H 0.237 0.763 31 H 0.181 0.819 32 H 0.423 0.577 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.023 0.977 36 H 0.080 0.920 37 H -0.016 1.016 38 H 0.031 0.969 39 H 0.266 0.734 40 H 0.025 0.975 41 H 0.095 0.905 42 H 0.099 0.901 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.830 16.615 6.507 24.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.214 6.214 3 C 0.143 3.857 4 N -0.286 5.286 5 C 0.018 3.982 6 N -0.252 5.252 7 C -0.014 4.014 8 C -0.056 4.056 9 N -0.309 5.309 10 C 0.412 3.588 11 O -0.485 6.485 12 N -0.352 5.352 13 C -0.001 4.001 14 C -0.077 4.077 15 N -0.262 5.262 16 C 0.044 3.956 17 C -0.551 4.551 18 H 0.065 0.935 19 C -0.186 4.186 20 N -0.586 5.586 21 Si 0.765 3.235 22 H -0.191 1.191 23 H -0.211 1.211 24 H -0.178 1.178 25 C -0.089 4.089 26 C 0.018 3.982 27 H 0.084 0.916 28 H 0.144 0.856 29 H 0.082 0.918 30 H 0.253 0.747 31 H 0.198 0.802 32 H 0.264 0.736 33 H 0.107 0.893 34 H 0.120 0.880 35 H 0.041 0.959 36 H 0.098 0.902 37 H 0.002 0.998 38 H 0.049 0.951 39 H 0.075 0.925 40 H 0.043 0.957 41 H 0.113 0.887 42 H 0.117 0.883 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -16.941 17.251 7.157 25.216 hybrid contribution 1.061 -0.855 -1.404 1.956 sum -15.880 16.396 5.753 23.539 Atomic orbital electron populations 1.23225 0.74446 1.05318 1.02960 1.86199 1.25449 1.22902 1.86848 1.19911 0.87436 0.86603 0.91717 1.68207 1.40688 0.98816 1.20937 1.25404 0.88500 0.94632 0.89621 1.68524 1.07099 1.32913 1.16691 1.23522 1.01947 0.85229 0.90691 1.18528 0.88196 0.89397 1.09521 1.42350 1.12129 1.11733 1.64693 1.15802 0.80676 0.83559 0.78786 1.90845 1.75070 1.31386 1.51151 1.47436 1.17148 1.14426 1.56203 1.22001 0.96698 0.86856 0.94514 1.22389 0.90012 1.00699 0.94592 1.61809 1.03624 1.25411 1.35398 1.19941 0.91549 0.93770 0.90304 1.21232 1.08465 0.97783 1.27625 0.93481 1.25755 1.01394 0.95125 0.96362 1.70029 1.39745 1.11709 1.37128 0.85805 0.80004 0.79643 0.78004 1.19061 1.21069 1.17849 1.22548 0.99432 0.89830 0.97096 1.21668 0.78724 1.03049 0.94711 0.91586 0.85569 0.91846 0.74695 0.80236 0.73634 0.89308 0.87979 0.95857 0.90196 0.99802 0.95068 0.92485 0.95663 0.88707 0.88261 0.89746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.41 113.37 1.18 1.57 16 2 O -0.31 -5.53 10.02 -88.97 -0.89 -6.43 16 3 C 0.33 7.05 7.55 84.98 0.64 7.69 16 4 N -0.56 -10.75 9.38 -312.48 -2.93 -13.69 16 5 C 0.31 5.44 12.28 180.89 2.22 7.66 16 6 N -0.53 -12.24 10.43 -199.80 -2.08 -14.32 16 7 C 0.15 3.80 9.99 84.72 0.85 4.65 16 8 C 0.05 1.07 6.50 38.35 0.25 1.31 16 9 N -0.66 -14.77 5.18 -316.19 -1.64 -16.41 16 10 C 0.71 19.01 8.14 179.05 1.46 20.47 16 11 O -0.60 -19.17 13.03 -4.00 -0.05 -19.22 16 12 N -0.62 -15.90 3.00 -835.00 -2.51 -18.41 16 13 C 0.12 2.98 6.52 86.50 0.56 3.54 16 14 C 0.05 1.73 5.47 86.54 0.47 2.21 16 15 N -0.54 -20.10 4.62 -898.89 -4.15 -24.25 16 16 C 0.17 7.71 3.79 85.56 0.32 8.04 16 17 C -0.51 -27.91 8.96 25.60 0.23 -27.68 16 18 H 0.05 2.82 7.37 -2.91 -0.02 2.80 16 19 C 0.01 0.63 5.47 84.65 0.46 1.10 16 20 N -0.95 -57.04 13.96 21.44 0.30 -56.74 16 21 Si 0.94 42.65 27.47 68.60 1.88 44.53 16 22 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 23 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 24 H -0.25 -10.87 6.54 99.48 0.65 -10.21 16 25 C 0.04 1.20 5.62 86.38 0.49 1.69 16 26 C 0.14 3.67 6.61 86.35 0.57 4.24 16 27 H 0.07 0.71 8.12 -2.39 -0.02 0.69 16 28 H 0.13 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.06 0.71 8.12 -2.38 -0.02 0.69 16 30 H 0.24 2.13 8.06 -2.91 -0.02 2.11 16 31 H 0.18 5.00 5.89 -2.91 -0.02 4.98 16 32 H 0.42 7.77 6.09 -92.71 -0.56 7.20 16 33 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.10 1.87 5.85 -2.39 -0.01 1.85 16 35 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.08 3.05 6.67 -2.39 -0.02 3.04 16 37 H -0.02 -0.72 7.18 -2.39 -0.02 -0.74 16 38 H 0.03 1.38 7.40 -2.39 -0.02 1.36 16 39 H 0.27 15.05 8.31 -92.70 -0.77 14.28 16 40 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.09 2.65 7.99 -2.38 -0.02 2.63 16 42 H 0.10 2.52 7.04 -2.38 -0.02 2.50 16 43 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -69.80 349.95 -1.94 -71.73 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: 0.43 Total: 16.70 kcal Atomic # 6 Polarization: 26.79 SS G_CDS: 9.71 Total: 36.49 kcal Atomic # 7 Polarization: -130.80 SS G_CDS: -13.01 Total: -143.81 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -0.94 Total: -25.65 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 1.88 Total: 44.53 kcal Total: -69.80 -1.94 -71.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602890215.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.007 kcal (2) G-P(sol) polarization free energy of solvation -69.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds