Wall clock time and date at job start Fri Apr 10 2020 18:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35671 * 117.00376 * 2 1 4 4 C 1.38988 * 120.03159 * 179.97438 * 3 2 1 5 5 N 1.32067 * 120.08612 * 179.97438 * 4 3 2 6 6 C 1.32059 * 120.13998 * 0.02987 * 5 4 3 7 7 C 1.39055 * 120.05010 * 359.97438 * 6 5 4 8 8 N 1.39391 * 120.04118 * 179.97438 * 7 6 5 9 9 C 1.34774 * 120.00042 * 17.35941 * 8 7 6 10 10 O 1.21580 * 120.00114 * 5.66881 * 9 8 7 11 11 N 1.34775 * 119.99775 * 185.66183 * 9 8 7 12 12 C 1.47076 * 120.88404 * 354.83745 * 11 9 8 13 13 C 1.53238 * 108.52065 * 231.15856 * 12 11 9 14 14 N 1.46894 * 109.34151 * 306.16895 * 13 12 11 15 15 C 1.46902 * 110.99837 * 187.25485 * 14 13 12 16 16 C 1.50704 * 109.46704 * 170.00377 * 15 14 13 17 17 H 1.07999 * 120.00183 * 359.97438 * 16 15 14 18 18 C 1.37884 * 119.99463 * 180.02562 * 16 15 14 19 19 N 1.31509 * 120.00160 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99602 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47438 * 89.99628 * 20 18 16 22 22 H 1.48506 * 109.47124 * 209.99813 * 20 18 16 23 23 H 1.48505 * 109.47457 * 329.99162 * 20 18 16 24 24 C 1.46898 * 111.26802 * 63.10500 * 14 13 12 25 25 C 1.47084 * 120.87846 * 174.81031 * 11 9 8 26 26 N 1.32569 * 120.01979 * 0.25767 * 3 2 1 27 27 H 1.09004 * 109.46889 * 299.99856 * 1 2 3 28 28 H 1.08994 * 109.47121 * 60.00279 * 1 2 3 29 29 H 1.08998 * 109.47261 * 180.02562 * 1 2 3 30 30 H 1.08001 * 119.95609 * 359.97438 * 4 3 2 31 31 H 1.07999 * 119.97640 * 180.02562 * 6 5 4 32 32 H 0.97003 * 119.99576 * 197.35754 * 8 7 6 33 33 H 1.09007 * 109.62842 * 111.44917 * 12 11 9 34 34 H 1.08995 * 109.62894 * 350.87099 * 12 11 9 35 35 H 1.09006 * 109.48752 * 186.21092 * 13 12 11 36 36 H 1.08997 * 109.49017 * 66.13519 * 13 12 11 37 37 H 1.08998 * 109.46996 * 289.99649 * 15 14 13 38 38 H 1.08993 * 109.47285 * 50.00259 * 15 14 13 39 39 H 0.97000 * 120.00191 * 180.02562 * 19 18 16 40 40 H 1.09001 * 109.49180 * 56.85624 * 24 14 13 41 41 H 1.09003 * 109.49120 * 176.90667 * 24 14 13 42 42 H 1.08998 * 109.62973 * 9.13129 * 25 11 9 43 43 H 1.09005 * 109.62945 * 248.55130 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4329 1.2822 0.0005 5 7 4.0337 2.4583 0.0000 6 6 3.3183 3.5684 -0.0004 7 6 1.9293 3.5016 -0.0009 8 7 1.1744 4.6734 -0.0008 9 6 1.7460 5.8433 -0.3485 10 8 2.8896 5.8623 -0.7608 11 7 1.0498 6.9921 -0.2393 12 6 -0.3687 6.9813 0.1489 13 6 -1.1586 7.8100 -0.8697 14 7 -0.5558 9.1448 -0.9829 15 6 -1.3821 10.0264 -1.8184 16 6 -0.8718 11.4406 -1.7140 17 1 -0.0193 11.6623 -1.0892 18 6 -1.4941 12.4515 -2.4154 19 7 -2.5326 12.1815 -3.1758 20 14 -0.8612 14.2042 -2.2866 21 1 0.1600 14.4404 -3.3386 22 1 -1.9892 15.1526 -2.4699 23 1 -0.2513 14.4133 -0.9488 24 6 0.8179 9.0673 -1.4976 25 6 1.6887 8.2901 -0.5047 26 7 1.3234 2.3209 0.0052 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 4.0209 0.3763 0.0014 31 1 3.8123 4.5287 -0.0012 32 1 0.2376 4.6467 0.2496 33 1 -0.4801 7.4180 1.1415 34 1 -0.7393 5.9563 0.1532 35 1 -2.1926 7.9048 -0.5379 36 1 -1.1315 7.3151 -1.8404 37 1 -1.3301 9.6971 -2.8561 38 1 -2.4162 9.9871 -1.4761 39 1 -2.9701 12.8926 -3.6696 40 1 0.8174 8.5549 -2.4597 41 1 1.2171 10.0739 -1.6218 42 1 2.6784 8.1304 -0.9327 43 1 1.7752 8.8526 0.4250 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603053368.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:40 Heat of formation + Delta-G solvation = -1.259440 kcal Electronic energy + Delta-G solvation = -26746.799721 eV Core-core repulsion = 22828.121743 eV Total energy + Delta-G solvation = -3918.677977 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.77182 -41.58064 -39.67705 -39.06388 -36.69237 -36.14800 -34.62797 -34.33660 -32.20365 -31.33360 -29.94967 -28.35227 -27.33853 -25.61291 -25.08857 -24.48625 -23.93828 -22.46136 -21.00613 -20.08040 -19.44060 -18.58078 -18.44946 -18.09722 -17.54257 -17.36499 -16.87179 -16.74899 -16.37405 -15.99463 -15.60986 -15.52248 -15.36341 -15.24302 -15.11859 -14.55352 -14.24669 -14.04468 -13.61017 -13.15736 -13.11282 -12.83469 -12.76019 -12.63640 -12.57733 -12.55581 -12.39314 -12.34178 -12.17554 -11.76233 -11.41640 -11.21263 -11.13196 -10.61950 -10.50344 -9.95178 -9.32645 -9.06905 -8.20675 -6.30226 -0.28456 -0.01630 0.94189 1.43654 1.43985 1.55489 1.71042 1.88984 2.33496 2.41128 2.62416 3.10504 3.13064 3.21701 3.31869 3.50868 3.82489 3.95993 4.02633 4.11494 4.23776 4.38111 4.39791 4.40756 4.44909 4.54700 4.68403 4.74409 4.78206 4.83138 4.94759 5.00233 5.09017 5.19574 5.28092 5.29862 5.49223 5.64756 5.90204 6.03087 6.05287 6.23360 6.51060 6.57262 6.69609 6.85734 7.07791 7.39791 8.90424 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.030233 B = 0.002358 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.920611 B =11870.750932 C =12546.216156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.299 6.299 3 C 0.302 3.698 4 C 0.008 3.992 5 N -0.398 5.398 6 C -0.018 4.018 7 C 0.364 3.636 8 N -0.648 5.648 9 C 0.715 3.285 10 O -0.592 6.592 11 N -0.611 5.611 12 C 0.121 3.879 13 C 0.036 3.964 14 N -0.537 5.537 15 C 0.209 3.791 16 C -0.522 4.522 17 H 0.068 0.932 18 C 0.001 3.999 19 N -0.935 5.935 20 Si 0.967 3.033 21 H -0.276 1.276 22 H -0.285 1.285 23 H -0.262 1.262 24 C 0.053 3.947 25 C 0.143 3.857 26 N -0.537 5.537 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.130 0.870 30 H 0.205 0.795 31 H 0.194 0.806 32 H 0.425 0.575 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.092 0.908 36 H 0.018 0.982 37 H -0.043 1.043 38 H 0.011 0.989 39 H 0.264 0.736 40 H 0.009 0.991 41 H 0.084 0.916 42 H 0.096 0.904 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.588 -22.534 9.755 25.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.204 6.204 3 C 0.118 3.882 4 C -0.156 4.156 5 N -0.113 5.113 6 C -0.180 4.180 7 C 0.131 3.869 8 N -0.300 5.300 9 C 0.417 3.583 10 O -0.471 6.471 11 N -0.347 5.347 12 C -0.001 4.001 13 C -0.093 4.093 14 N -0.261 5.261 15 C 0.082 3.918 16 C -0.560 4.560 17 H 0.086 0.914 18 C -0.197 4.197 19 N -0.576 5.576 20 Si 0.792 3.208 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.186 1.186 24 C -0.076 4.076 25 C 0.021 3.979 26 N -0.274 5.274 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.148 0.852 30 H 0.221 0.779 31 H 0.210 0.790 32 H 0.267 0.733 33 H 0.118 0.882 34 H 0.125 0.875 35 H 0.110 0.890 36 H 0.036 0.964 37 H -0.025 1.025 38 H 0.029 0.971 39 H 0.072 0.928 40 H 0.028 0.972 41 H 0.102 0.898 42 H 0.115 0.885 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.323 -22.399 9.844 25.270 hybrid contribution -1.193 0.890 -1.291 1.971 sum 5.130 -21.509 8.552 23.709 Atomic orbital electron populations 1.23190 0.75349 1.05352 1.02480 1.86307 1.24681 1.22326 1.87036 1.20831 0.90911 0.84494 0.91955 1.23301 0.89731 0.98149 1.04396 1.68565 1.38373 0.98013 1.06335 1.24330 0.90378 0.99707 1.03561 1.18727 0.89327 0.84926 0.93937 1.42365 1.15291 1.03472 1.68825 1.15608 0.84263 0.80183 0.78282 1.90788 1.18188 1.85221 1.52865 1.47451 1.12236 1.04605 1.70361 1.21999 0.77959 1.00961 0.99212 1.22525 0.99589 0.89499 0.97687 1.62019 1.02339 1.09823 1.51953 1.19370 0.92308 0.91608 0.88469 1.21480 1.14842 0.92781 1.26894 0.91368 1.25894 0.95139 1.03778 0.94854 1.70076 1.22511 1.34432 1.30578 0.85410 0.77767 0.78669 0.78952 1.20129 1.21062 1.18568 1.22334 0.89943 1.00526 0.94803 1.21711 0.96012 0.80419 0.99800 1.67243 1.40650 0.97580 1.21938 0.91957 0.92574 0.85241 0.77855 0.79006 0.73329 0.88151 0.87496 0.88966 0.96407 1.02483 0.97089 0.92763 0.97226 0.89761 0.88545 0.89018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.39 113.37 1.18 1.52 16 2 O -0.30 -4.88 10.49 -89.89 -0.94 -5.83 16 3 C 0.30 6.05 7.49 84.76 0.63 6.69 16 4 C 0.01 0.15 11.16 84.84 0.95 1.10 16 5 N -0.40 -9.82 10.48 -194.29 -2.04 -11.85 16 6 C -0.02 -0.46 9.99 84.85 0.85 0.38 16 7 C 0.36 8.69 7.54 132.82 1.00 9.70 16 8 N -0.65 -13.76 5.33 -321.95 -1.72 -15.47 16 9 C 0.71 18.62 8.17 179.06 1.46 20.08 16 10 O -0.59 -18.76 12.57 -3.97 -0.05 -18.81 16 11 N -0.61 -15.30 3.01 -835.94 -2.52 -17.81 16 12 C 0.12 2.51 6.54 86.35 0.56 3.08 16 13 C 0.04 1.08 5.62 86.38 0.49 1.56 16 14 N -0.54 -20.83 4.62 -899.83 -4.16 -24.99 16 15 C 0.21 10.49 4.72 85.56 0.40 10.89 16 16 C -0.52 -28.10 8.41 25.60 0.22 -27.89 16 17 H 0.07 3.55 7.13 -2.91 -0.02 3.53 16 18 C 0.00 0.08 5.46 84.66 0.46 0.54 16 19 N -0.94 -54.96 13.29 21.45 0.28 -54.68 16 20 Si 0.97 42.95 29.54 68.60 2.03 44.98 16 21 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 22 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 23 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 24 C 0.05 1.90 5.46 86.38 0.47 2.38 16 25 C 0.14 4.01 6.61 86.35 0.57 4.58 16 26 N -0.54 -11.71 9.42 -305.36 -2.88 -14.58 16 27 H 0.06 0.68 8.11 -2.39 -0.02 0.66 16 28 H 0.06 0.69 8.11 -2.39 -0.02 0.67 16 29 H 0.13 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.20 2.59 8.06 -2.91 -0.02 2.57 16 31 H 0.19 5.57 5.24 -4.45 -0.02 5.54 16 32 H 0.42 6.70 6.36 -92.71 -0.59 6.12 16 33 H 0.10 1.87 8.14 -2.38 -0.02 1.85 16 34 H 0.11 1.46 5.74 -2.39 -0.01 1.44 16 35 H 0.09 2.61 7.99 -2.38 -0.02 2.59 16 36 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 37 H -0.04 -2.39 8.12 -2.39 -0.02 -2.41 16 38 H 0.01 0.59 7.97 -2.39 -0.02 0.57 16 39 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 40 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 41 H 0.08 3.28 6.67 -2.39 -0.02 3.27 16 42 H 0.10 2.70 7.04 -2.39 -0.02 2.69 16 43 H 0.09 2.36 8.14 -2.38 -0.02 2.35 16 Total: -1.00 -68.73 353.19 -2.28 -71.01 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: 0.45 Total: 13.43 kcal Atomic # 6 Polarization: 25.36 SS G_CDS: 9.25 Total: 34.61 kcal Atomic # 7 Polarization: -126.38 SS G_CDS: -13.02 Total: -139.39 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -0.99 Total: -24.64 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -68.73 -2.28 -71.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603053368.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.753 kcal (2) G-P(sol) polarization free energy of solvation -68.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds