Wall clock time and date at job start Fri Apr 10 2020 18:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30887 * 1 3 3 Si 1.86803 * 119.99801 * 2 1 4 4 H 1.48502 * 109.46866 * 274.65277 * 3 2 1 5 5 H 1.48494 * 109.47272 * 34.65317 * 3 2 1 6 6 H 1.48500 * 109.46943 * 154.65377 * 3 2 1 7 7 C 1.39888 * 120.00205 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99997 * 162.15694 * 7 2 1 9 9 C 1.41214 * 119.99893 * 342.16415 * 7 2 1 10 10 C 1.40832 * 120.17791 * 155.14282 * 9 7 2 11 11 C 1.36442 * 119.81124 * 180.02562 * 10 9 7 12 12 C 1.39315 * 120.18572 * 0.02562 * 11 10 9 13 13 O 1.35668 * 119.81823 * 179.97438 * 12 11 10 14 14 C 1.42910 * 116.99969 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.47037 * 179.97438 * 14 13 12 16 16 H 1.08991 * 109.47276 * 54.99876 * 15 14 13 17 17 O 1.42903 * 109.47094 * 294.99898 * 15 14 13 18 18 C 1.53001 * 109.47123 * 175.00153 * 15 14 13 19 19 N 1.46894 * 109.47192 * 185.00027 * 18 15 14 20 20 C 1.47844 * 111.00229 * 69.15598 * 19 18 15 21 21 C 1.55117 * 104.90518 * 146.24001 * 20 19 18 22 22 C 1.55141 * 101.55951 * 323.15721 * 21 20 19 23 23 H 1.08995 * 110.70827 * 276.96910 * 22 21 20 24 24 C 1.52996 * 110.70371 * 153.90411 * 22 21 20 25 25 O 1.42901 * 109.47070 * 68.81059 * 24 22 21 26 26 C 1.47442 * 110.99884 * 189.99917 * 19 18 15 27 27 C 1.39315 * 120.36269 * 0.25354 * 12 11 10 28 28 C 1.36445 * 120.18412 * 359.48562 * 27 12 11 29 29 H 0.96995 * 119.99724 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.09600 * 0.02562 * 10 9 7 31 31 H 1.07994 * 119.90747 * 179.97438 * 11 10 9 32 32 H 1.09004 * 109.46832 * 59.99602 * 14 13 12 33 33 H 1.09001 * 109.47202 * 299.99879 * 14 13 12 34 34 H 0.96701 * 113.99738 * 300.00228 * 17 15 14 35 35 H 1.09008 * 109.47143 * 64.99768 * 18 15 14 36 36 H 1.08998 * 109.46646 * 305.00061 * 18 15 14 37 37 H 1.08995 * 110.37107 * 265.19600 * 20 19 18 38 38 H 1.08998 * 110.37451 * 27.42397 * 20 19 18 39 39 H 1.08993 * 111.14192 * 205.05037 * 21 20 19 40 40 H 1.09005 * 110.92206 * 81.17073 * 21 20 19 41 41 H 1.09000 * 109.47501 * 308.80749 * 24 22 21 42 42 H 1.08998 * 109.47076 * 188.80559 * 24 22 21 43 43 H 0.96696 * 114.00567 * 179.97438 * 25 24 22 44 44 H 1.09007 * 109.89034 * 117.33605 * 26 19 18 45 45 H 1.09003 * 110.02629 * 356.22220 * 26 19 18 46 46 H 1.08001 * 119.91178 * 179.72742 * 27 12 11 47 47 H 1.07997 * 120.09160 * 180.26179 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.3919 2.1032 -1.3955 5 1 1.4929 2.6223 0.7961 6 1 3.5861 1.4138 0.5994 7 6 2.0084 -1.2114 0.0005 8 1 3.0493 -1.2340 -0.2860 9 6 1.3532 -2.4048 0.3757 10 6 1.8227 -3.6474 -0.0923 11 6 1.1837 -4.7958 0.2744 12 6 0.0694 -4.7415 1.1089 13 8 -0.5606 -5.8880 1.4684 14 6 -1.6965 -5.7624 2.3265 15 6 -2.2698 -7.1502 2.6199 16 1 -1.4859 -7.7885 3.0273 17 8 -2.7710 -7.7239 1.4109 18 6 -3.4072 -7.0278 3.6360 19 7 -3.8779 -8.3686 4.0081 20 6 -2.8590 -9.0860 4.8037 21 6 -3.6702 -9.9563 5.7991 22 6 -4.8606 -9.0191 6.1329 23 1 -4.5846 -8.3078 6.9112 24 6 -6.0866 -9.8313 6.5549 25 8 -5.8391 -10.4436 7.8221 26 6 -5.1212 -8.2921 4.7968 27 6 -0.4049 -3.5160 1.5715 28 6 0.2259 -2.3588 1.2185 29 1 -0.4849 0.8400 -0.0004 30 1 2.6861 -3.6912 -0.7396 31 1 1.5421 -5.7494 -0.0839 32 1 -2.4556 -5.1520 1.8374 33 1 -1.3955 -5.2883 3.2607 34 1 -3.4734 -7.2076 0.9922 35 1 -4.2291 -6.4634 3.1952 36 1 -3.0462 -6.5098 4.5246 37 1 -2.2479 -9.7163 4.1578 38 1 -2.2319 -8.3774 5.3447 39 1 -3.0866 -10.1794 6.6922 40 1 -4.0167 -10.8730 5.3218 41 1 -6.2850 -10.6029 5.8111 42 1 -6.9504 -9.1712 6.6329 43 1 -6.5760 -10.9754 8.1527 44 1 -5.9323 -8.7836 4.2593 45 1 -5.3798 -7.2502 4.9860 46 1 -1.2719 -3.4821 2.2145 47 1 -0.1406 -1.4099 1.5814 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610091525.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:54 Heat of formation + Delta-G solvation = -117.731287 kcal Electronic energy + Delta-G solvation = -26268.972303 eV Core-core repulsion = 22416.491320 eV Total energy + Delta-G solvation = -3852.480983 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.177 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.82568 -38.86719 -37.50520 -36.70650 -35.88821 -33.33477 -32.84228 -30.23128 -29.77285 -29.60608 -28.86611 -26.17648 -24.83683 -24.22139 -22.39839 -21.17385 -20.74173 -20.68447 -20.30416 -17.83367 -17.36700 -17.15910 -16.59431 -16.16956 -16.09454 -15.71748 -15.18218 -14.94386 -14.46518 -14.42269 -13.96243 -13.90451 -13.65867 -13.51819 -12.93694 -12.84631 -12.67950 -12.39539 -12.15572 -11.99805 -11.73767 -11.71560 -11.45503 -11.41870 -11.23735 -11.11895 -11.00388 -10.99562 -10.74852 -10.59131 -10.36711 -9.92643 -9.90639 -9.77023 -9.36425 -9.01087 -8.55459 -7.65652 -7.00859 -6.73357 -4.25277 2.76479 2.96305 3.07460 3.11817 3.21267 3.41700 3.71391 3.94657 4.07966 4.25649 4.32520 4.52088 4.61637 4.72419 4.85993 4.96831 4.98394 5.01036 5.04094 5.13523 5.20299 5.25025 5.30150 5.44759 5.47027 5.58217 5.64622 5.67954 5.71943 5.80038 5.93172 6.05821 6.10106 6.28838 6.66875 6.69625 6.77076 6.89261 7.06618 7.17132 7.27807 7.40960 7.55956 7.79992 7.90416 8.00098 8.15466 8.44787 8.65086 8.89981 8.99224 10.21565 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.027032 B = 0.001959 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.564641 B =14286.793597 C =14820.411938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.075 3.925 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.086 3.914 10 C -0.195 4.195 11 C -0.112 4.112 12 C -0.009 4.009 13 O -0.318 6.318 14 C 0.038 3.962 15 C 0.119 3.881 16 H 0.103 0.897 17 O -0.540 6.540 18 C 0.021 3.979 19 N -0.515 5.515 20 C 0.036 3.964 21 C -0.116 4.116 22 C -0.113 4.113 23 H 0.082 0.918 24 C 0.087 3.913 25 O -0.574 6.574 26 C 0.049 3.951 27 C -0.175 4.175 28 C -0.134 4.134 29 H 0.279 0.721 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.370 0.630 35 H 0.081 0.919 36 H 0.047 0.953 37 H 0.085 0.915 38 H 0.048 0.952 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.050 0.950 42 H 0.046 0.954 43 H 0.379 0.621 44 H 0.080 0.920 45 H 0.058 0.942 46 H 0.092 0.908 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.083 -14.351 11.999 22.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.084 3.916 10 C -0.215 4.215 11 C -0.131 4.131 12 C -0.053 4.053 13 O -0.233 6.233 14 C -0.039 4.039 15 C 0.058 3.942 16 H 0.121 0.879 17 O -0.344 6.344 18 C -0.108 4.108 19 N -0.239 5.239 20 C -0.091 4.091 21 C -0.154 4.154 22 C -0.132 4.132 23 H 0.100 0.900 24 C 0.009 3.991 25 O -0.379 6.379 26 C -0.079 4.079 27 C -0.194 4.194 28 C -0.154 4.154 29 H 0.090 0.910 30 H 0.118 0.882 31 H 0.115 0.885 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.217 0.783 35 H 0.099 0.901 36 H 0.066 0.934 37 H 0.104 0.896 38 H 0.066 0.934 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.226 0.774 44 H 0.098 0.902 45 H 0.076 0.924 46 H 0.110 0.890 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -12.302 -14.778 11.520 22.415 hybrid contribution -0.705 1.830 0.790 2.114 sum -13.006 -12.948 12.309 22.099 Atomic orbital electron populations 1.69845 1.07529 1.28996 1.36355 1.25877 0.94708 1.01221 0.92379 0.86337 0.80750 0.80844 0.79003 1.19630 1.20156 1.18483 1.19461 0.98087 0.91219 1.40533 0.90492 1.17601 0.91879 0.92199 0.89906 1.20608 1.03211 0.92232 1.05423 1.19627 0.95644 0.97718 1.00126 1.18606 0.97613 0.83867 1.05170 1.85866 1.41936 1.30612 1.64921 1.23131 0.89212 0.97129 0.94466 1.21811 0.94087 0.93254 0.85000 0.87910 1.86630 1.57446 1.52004 1.38300 1.22973 0.98701 0.90267 0.98847 1.63516 1.03550 1.16370 1.40462 1.23203 0.94432 0.96925 0.94540 1.22728 0.95868 0.98062 0.98754 1.22393 0.95541 0.97722 0.97539 0.89998 1.22132 0.96495 0.95430 0.85021 1.86481 1.45118 1.69536 1.36766 1.22790 0.93820 0.99683 0.91604 1.20593 1.01346 0.92961 1.04474 1.20927 0.98514 0.96429 0.99497 0.91047 0.88181 0.88451 0.92813 0.92621 0.78342 0.90055 0.93444 0.89641 0.93354 0.90507 0.90621 0.93161 0.93594 0.77393 0.90189 0.92385 0.88960 0.86192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.78 10.97 55.54 0.61 -20.17 16 2 C 0.07 1.88 5.13 -17.34 -0.09 1.79 16 3 Si 0.91 18.72 29.60 -169.99 -5.03 13.69 16 4 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 7 C -0.46 -12.35 9.04 -37.83 -0.34 -12.69 16 8 H 0.08 1.97 7.91 -52.49 -0.41 1.55 16 9 C 0.09 2.33 5.57 -106.81 -0.60 1.73 16 10 C -0.20 -4.87 9.74 -39.25 -0.38 -5.25 16 11 C -0.11 -2.67 9.92 -39.83 -0.40 -3.07 16 12 C -0.01 -0.22 6.71 -38.78 -0.26 -0.48 16 13 O -0.32 -6.61 10.09 -23.55 -0.24 -6.85 16 14 C 0.04 0.60 4.37 37.16 0.16 0.76 16 15 C 0.12 1.56 3.28 -26.73 -0.09 1.47 16 16 H 0.10 1.44 7.34 -51.93 -0.38 1.06 16 17 O -0.54 -7.75 13.25 -40.08 -0.53 -8.28 16 18 C 0.02 0.22 4.20 -3.83 -0.02 0.20 16 19 N -0.52 -5.24 5.11 -231.11 -1.18 -6.43 16 20 C 0.04 0.35 5.72 -2.18 -0.01 0.34 16 21 C -0.12 -0.99 6.45 -24.48 -0.16 -1.14 16 22 C -0.11 -0.89 3.21 -88.80 -0.28 -1.17 16 23 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 24 C 0.09 0.57 6.33 37.16 0.24 0.80 16 25 O -0.57 -4.15 13.55 -35.23 -0.48 -4.63 16 26 C 0.05 0.40 6.46 -2.83 -0.02 0.38 16 27 C -0.17 -4.12 8.96 -39.83 -0.36 -4.48 16 28 C -0.13 -3.50 8.64 -39.25 -0.34 -3.84 16 29 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 30 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 31 H 0.10 2.11 8.06 -52.49 -0.42 1.68 16 32 H 0.05 0.82 7.63 -51.93 -0.40 0.43 16 33 H 0.06 0.85 7.66 -51.93 -0.40 0.45 16 34 H 0.37 4.12 9.05 45.56 0.41 4.53 16 35 H 0.08 0.76 8.03 -51.92 -0.42 0.34 16 36 H 0.05 0.47 7.85 -51.93 -0.41 0.06 16 37 H 0.09 0.89 8.12 -51.93 -0.42 0.46 16 38 H 0.05 0.47 7.62 -51.93 -0.40 0.07 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.08 0.64 7.98 -51.93 -0.41 0.23 16 41 H 0.05 0.29 8.06 -51.93 -0.42 -0.12 16 42 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.38 1.03 9.12 45.56 0.42 1.45 16 44 H 0.08 0.61 7.82 -51.92 -0.41 0.21 16 45 H 0.06 0.44 7.56 -51.93 -0.39 0.05 16 46 H 0.09 1.92 6.27 -52.49 -0.33 1.59 16 47 H 0.12 3.20 6.18 -52.49 -0.32 2.88 16 LS Contribution 380.65 15.07 5.74 5.74 Total: -1.00 -31.46 380.65 -9.99 -41.45 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -5.94 Total: 10.13 kcal Atomic # 6 Polarization: -21.70 SS G_CDS: -2.94 Total: -24.64 kcal Atomic # 7 Polarization: -26.02 SS G_CDS: -0.57 Total: -26.60 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -1.25 Total: -19.76 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.69 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.46 -9.99 -41.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610091525.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.286 kcal (2) G-P(sol) polarization free energy of solvation -31.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds