Wall clock time and date at job start Fri Apr 10 2020 18:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30887 * 1 3 3 Si 1.86803 * 119.99801 * 2 1 4 4 H 1.48502 * 109.46866 * 274.65277 * 3 2 1 5 5 H 1.48494 * 109.47272 * 34.65317 * 3 2 1 6 6 H 1.48500 * 109.46943 * 154.65377 * 3 2 1 7 7 C 1.39888 * 120.00205 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99997 * 162.15694 * 7 2 1 9 9 C 1.41214 * 119.99893 * 342.16415 * 7 2 1 10 10 C 1.40832 * 120.17791 * 155.14282 * 9 7 2 11 11 C 1.36442 * 119.81124 * 180.02562 * 10 9 7 12 12 C 1.39315 * 120.18572 * 0.02562 * 11 10 9 13 13 O 1.35668 * 119.81823 * 179.97438 * 12 11 10 14 14 C 1.42910 * 116.99969 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.47037 * 179.97438 * 14 13 12 16 16 H 1.08991 * 109.47276 * 54.99876 * 15 14 13 17 17 O 1.42903 * 109.47094 * 294.99898 * 15 14 13 18 18 C 1.53001 * 109.47123 * 175.00153 * 15 14 13 19 19 N 1.46894 * 109.47192 * 185.00027 * 18 15 14 20 20 C 1.47844 * 111.00229 * 69.15598 * 19 18 15 21 21 C 1.55117 * 104.90518 * 146.24001 * 20 19 18 22 22 C 1.55141 * 101.55951 * 323.15721 * 21 20 19 23 23 H 1.08995 * 110.70827 * 276.96910 * 22 21 20 24 24 C 1.52996 * 110.70371 * 153.90411 * 22 21 20 25 25 O 1.42901 * 109.47070 * 68.81059 * 24 22 21 26 26 C 1.47442 * 110.99884 * 189.99917 * 19 18 15 27 27 C 1.39315 * 120.36269 * 0.25354 * 12 11 10 28 28 C 1.36445 * 120.18412 * 359.48562 * 27 12 11 29 29 H 0.96995 * 119.99724 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.09600 * 0.02562 * 10 9 7 31 31 H 1.07994 * 119.90747 * 179.97438 * 11 10 9 32 32 H 1.09004 * 109.46832 * 59.99602 * 14 13 12 33 33 H 1.09001 * 109.47202 * 299.99879 * 14 13 12 34 34 H 0.96701 * 113.99738 * 300.00228 * 17 15 14 35 35 H 1.09008 * 109.47143 * 64.99768 * 18 15 14 36 36 H 1.08998 * 109.46646 * 305.00061 * 18 15 14 37 37 H 1.08995 * 110.37107 * 265.19600 * 20 19 18 38 38 H 1.08998 * 110.37451 * 27.42397 * 20 19 18 39 39 H 1.08993 * 111.14192 * 205.05037 * 21 20 19 40 40 H 1.09005 * 110.92206 * 81.17073 * 21 20 19 41 41 H 1.09000 * 109.47501 * 308.80749 * 24 22 21 42 42 H 1.08998 * 109.47076 * 188.80559 * 24 22 21 43 43 H 0.96696 * 114.00567 * 179.97438 * 25 24 22 44 44 H 1.09007 * 109.89034 * 117.33605 * 26 19 18 45 45 H 1.09003 * 110.02629 * 356.22220 * 26 19 18 46 46 H 1.08001 * 119.91178 * 179.72742 * 27 12 11 47 47 H 1.07997 * 120.09160 * 180.26179 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.3919 2.1032 -1.3955 5 1 1.4929 2.6223 0.7961 6 1 3.5861 1.4138 0.5994 7 6 2.0084 -1.2114 0.0005 8 1 3.0493 -1.2340 -0.2860 9 6 1.3532 -2.4048 0.3757 10 6 1.8227 -3.6474 -0.0923 11 6 1.1837 -4.7958 0.2744 12 6 0.0694 -4.7415 1.1089 13 8 -0.5606 -5.8880 1.4684 14 6 -1.6965 -5.7624 2.3265 15 6 -2.2698 -7.1502 2.6199 16 1 -1.4859 -7.7885 3.0273 17 8 -2.7710 -7.7239 1.4109 18 6 -3.4072 -7.0278 3.6360 19 7 -3.8779 -8.3686 4.0081 20 6 -2.8590 -9.0860 4.8037 21 6 -3.6702 -9.9563 5.7991 22 6 -4.8606 -9.0191 6.1329 23 1 -4.5846 -8.3078 6.9112 24 6 -6.0866 -9.8313 6.5549 25 8 -5.8391 -10.4436 7.8221 26 6 -5.1212 -8.2921 4.7968 27 6 -0.4049 -3.5160 1.5715 28 6 0.2259 -2.3588 1.2185 29 1 -0.4849 0.8400 -0.0004 30 1 2.6861 -3.6912 -0.7396 31 1 1.5421 -5.7494 -0.0839 32 1 -2.4556 -5.1520 1.8374 33 1 -1.3955 -5.2883 3.2607 34 1 -3.4734 -7.2076 0.9922 35 1 -4.2291 -6.4634 3.1952 36 1 -3.0462 -6.5098 4.5246 37 1 -2.2479 -9.7163 4.1578 38 1 -2.2319 -8.3774 5.3447 39 1 -3.0866 -10.1794 6.6922 40 1 -4.0167 -10.8730 5.3218 41 1 -6.2850 -10.6029 5.8111 42 1 -6.9504 -9.1712 6.6329 43 1 -6.5760 -10.9754 8.1527 44 1 -5.9323 -8.7836 4.2593 45 1 -5.3798 -7.2502 4.9860 46 1 -1.2719 -3.4821 2.2145 47 1 -0.1406 -1.4099 1.5814 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610091525.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:53 Heat of formation + Delta-G solvation = -141.584333 kcal Electronic energy + Delta-G solvation = -26270.006649 eV Core-core repulsion = 22416.491320 eV Total energy + Delta-G solvation = -3853.515329 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.177 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.80772 -40.27501 -38.69839 -37.74229 -37.10698 -35.20721 -33.63486 -31.64484 -31.42922 -30.59926 -30.32801 -27.30259 -26.37249 -25.12559 -23.60761 -22.79281 -22.08338 -21.70933 -21.24480 -19.27898 -18.72397 -18.31186 -17.83714 -17.36349 -17.02046 -16.77359 -16.47527 -15.90786 -15.80634 -15.69275 -15.36525 -15.07497 -14.65416 -14.50505 -14.37308 -14.20523 -13.83824 -13.65719 -13.42267 -13.35806 -13.22141 -12.90697 -12.75824 -12.73340 -12.40685 -12.30446 -12.13749 -11.95991 -11.78474 -11.69118 -11.61544 -11.58686 -11.22774 -10.96358 -10.84831 -10.84755 -9.57971 -9.31056 -8.91682 -8.60987 -6.23170 0.92800 1.03339 1.39395 1.49022 1.55345 2.22486 2.33770 2.71595 3.03352 3.21163 3.49575 3.62106 3.69246 3.71637 3.87069 3.99824 4.04999 4.20245 4.24677 4.28132 4.31522 4.36914 4.41799 4.46333 4.47360 4.53914 4.61792 4.66104 4.82070 4.87277 4.93260 4.97629 5.02287 5.06258 5.08685 5.14535 5.30103 5.36130 5.51185 5.65290 5.93003 5.96136 6.00493 6.05513 6.22944 6.55316 6.77986 6.87550 6.90266 6.94489 7.09371 8.36163 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.027032 B = 0.001959 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.564641 B =14286.793597 C =14820.411938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.034 3.966 3 Si 0.981 3.019 4 H -0.263 1.263 5 H -0.266 1.266 6 H -0.260 1.260 7 C -0.499 4.499 8 H 0.075 0.925 9 C 0.053 3.947 10 C -0.204 4.204 11 C -0.123 4.123 12 C -0.001 4.001 13 O -0.329 6.329 14 C 0.031 3.969 15 C 0.129 3.871 16 H 0.092 0.908 17 O -0.558 6.558 18 C 0.029 3.971 19 N -0.528 5.528 20 C 0.035 3.965 21 C -0.112 4.112 22 C -0.111 4.111 23 H 0.073 0.927 24 C 0.089 3.911 25 O -0.595 6.595 26 C 0.051 3.949 27 C -0.175 4.175 28 C -0.154 4.154 29 H 0.287 0.713 30 H 0.109 0.891 31 H 0.117 0.883 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.383 0.617 35 H 0.096 0.904 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.046 0.954 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.397 0.603 44 H 0.088 0.912 45 H 0.066 0.934 46 H 0.119 0.881 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.344 -14.428 12.774 24.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.180 4.180 3 Si 0.802 3.198 4 H -0.188 1.188 5 H -0.191 1.191 6 H -0.184 1.184 7 C -0.529 4.529 8 H 0.094 0.906 9 C 0.051 3.949 10 C -0.224 4.224 11 C -0.142 4.142 12 C -0.045 4.045 13 O -0.245 6.245 14 C -0.046 4.046 15 C 0.069 3.931 16 H 0.110 0.890 17 O -0.364 6.364 18 C -0.099 4.099 19 N -0.252 5.252 20 C -0.093 4.093 21 C -0.150 4.150 22 C -0.130 4.130 23 H 0.092 0.908 24 C 0.011 3.989 25 O -0.403 6.403 26 C -0.077 4.077 27 C -0.194 4.194 28 C -0.174 4.174 29 H 0.098 0.902 30 H 0.127 0.873 31 H 0.135 0.865 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.232 0.768 35 H 0.114 0.886 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.065 0.935 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.247 0.753 44 H 0.106 0.894 45 H 0.085 0.915 46 H 0.137 0.863 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -13.598 -14.886 12.304 23.619 hybrid contribution -0.404 1.681 0.577 1.822 sum -14.001 -13.205 12.881 23.159 Atomic orbital electron populations 1.69889 1.08915 1.30405 1.36607 1.26724 0.95509 1.04420 0.91340 0.85208 0.79172 0.76093 0.79315 1.18825 1.19061 1.18357 1.19709 0.98343 0.92415 1.42442 0.90641 1.17972 0.92864 0.93185 0.90894 1.20798 1.03718 0.92237 1.05651 1.19903 0.95884 0.98172 1.00227 1.18724 0.97216 0.84580 1.03998 1.85865 1.43415 1.29448 1.65744 1.23483 0.87800 0.99289 0.93997 1.21717 0.94784 0.91216 0.85398 0.89043 1.86595 1.58171 1.52731 1.38951 1.22855 0.98044 0.90795 0.98228 1.63481 1.04250 1.16154 1.41291 1.23182 0.94540 0.96974 0.94572 1.22677 0.96042 0.97995 0.98275 1.22368 0.95933 0.97535 0.97201 0.90813 1.22121 0.96072 0.95715 0.84996 1.86427 1.46723 1.70087 1.37100 1.22818 0.92949 1.00409 0.91509 1.20805 1.01846 0.92305 1.04432 1.20911 0.99222 0.96804 1.00442 0.90232 0.87261 0.86513 0.91924 0.91711 0.76801 0.88557 0.92794 0.90787 0.93536 0.90693 0.90638 0.92482 0.92173 0.75270 0.89375 0.91513 0.86312 0.87475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.62 10.97 21.82 0.24 -43.38 16 2 C 0.03 1.72 5.13 85.23 0.44 2.16 16 3 Si 0.98 38.37 29.60 68.60 2.03 40.40 16 4 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 5 H -0.27 -9.87 7.11 99.48 0.71 -9.16 16 6 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 7 C -0.50 -27.25 9.04 23.40 0.21 -27.04 16 8 H 0.08 3.97 7.91 -2.91 -0.02 3.94 16 9 C 0.05 2.92 5.57 -21.28 -0.12 2.80 16 10 C -0.20 -10.36 9.74 22.49 0.22 -10.14 16 11 C -0.12 -5.82 9.92 22.11 0.22 -5.60 16 12 C 0.00 -0.06 6.71 22.79 0.15 0.09 16 13 O -0.33 -13.29 10.09 -85.21 -0.86 -14.15 16 14 C 0.03 0.92 4.37 71.98 0.31 1.23 16 15 C 0.13 3.21 3.28 30.59 0.10 3.31 16 16 H 0.09 2.49 7.34 -2.39 -0.02 2.47 16 17 O -0.56 -15.22 13.25 -144.34 -1.91 -17.13 16 18 C 0.03 0.55 4.20 86.30 0.36 0.91 16 19 N -0.53 -9.84 5.11 -885.10 -4.52 -14.37 16 20 C 0.03 0.65 5.72 86.85 0.50 1.15 16 21 C -0.11 -1.79 6.45 32.05 0.21 -1.58 16 22 C -0.11 -1.57 3.21 -9.61 -0.03 -1.60 16 23 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 24 C 0.09 0.97 6.33 71.98 0.46 1.42 16 25 O -0.59 -7.58 13.55 -148.98 -2.02 -9.60 16 26 C 0.05 0.72 6.46 86.65 0.56 1.28 16 27 C -0.18 -8.19 8.96 22.11 0.20 -7.99 16 28 C -0.15 -8.18 8.64 22.49 0.19 -7.99 16 29 H 0.29 13.57 8.30 -92.71 -0.77 12.80 16 30 H 0.11 5.15 8.06 -2.91 -0.02 5.13 16 31 H 0.12 4.95 8.06 -2.91 -0.02 4.93 16 32 H 0.06 1.78 7.63 -2.38 -0.02 1.76 16 33 H 0.06 1.84 7.66 -2.39 -0.02 1.82 16 34 H 0.38 7.86 9.05 -74.06 -0.67 7.19 16 35 H 0.10 1.52 8.03 -2.38 -0.02 1.50 16 36 H 0.05 0.95 7.85 -2.39 -0.02 0.93 16 37 H 0.07 1.52 8.12 -2.39 -0.02 1.50 16 38 H 0.05 0.87 7.62 -2.39 -0.02 0.85 16 39 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.07 1.20 7.98 -2.38 -0.02 1.18 16 41 H 0.06 0.54 8.06 -2.39 -0.02 0.52 16 42 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 43 H 0.40 1.44 9.12 -74.06 -0.68 0.76 16 44 H 0.09 1.12 7.82 -2.38 -0.02 1.10 16 45 H 0.07 0.84 7.56 -2.39 -0.02 0.82 16 46 H 0.12 4.77 6.27 -2.91 -0.02 4.76 16 47 H 0.11 5.87 6.18 -2.91 -0.02 5.85 16 Total: -1.00 -67.41 380.65 -3.43 -70.84 By element: Atomic # 1 Polarization: 35.33 SS G_CDS: -0.36 Total: 34.97 kcal Atomic # 6 Polarization: -51.56 SS G_CDS: 3.98 Total: -47.58 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: -4.28 Total: -57.75 kcal Atomic # 8 Polarization: -36.08 SS G_CDS: -4.79 Total: -40.87 kcal Atomic # 14 Polarization: 38.37 SS G_CDS: 2.03 Total: 40.40 kcal Total: -67.41 -3.43 -70.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610091525.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.749 kcal (2) G-P(sol) polarization free energy of solvation -67.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds