Wall clock time and date at job start Fri Apr 10 2020 18:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35537 * 116.99974 * 2 1 4 4 C 1.39009 * 120.47099 * 180.02562 * 3 2 1 5 5 C 1.39113 * 118.29040 * 180.02562 * 4 3 2 6 6 N 1.39070 * 120.49117 * 179.97438 * 5 4 3 7 7 C 1.34771 * 120.00406 * 174.77023 * 6 5 4 8 8 O 1.21578 * 120.00215 * 4.98924 * 7 6 5 9 9 N 1.34772 * 120.00342 * 184.99635 * 7 6 5 10 10 C 1.46498 * 120.00594 * 179.97438 * 9 7 6 11 11 C 1.53037 * 109.46135 * 275.02871 * 10 9 7 12 12 C 1.53194 * 109.31253 * 178.59823 * 11 10 9 13 13 N 1.46921 * 108.76627 * 54.65462 * 12 11 10 14 14 C 1.36937 * 120.63552 * 126.36325 * 13 12 11 15 15 H 1.08001 * 119.99880 * 328.38485 * 14 13 12 16 16 C 1.38809 * 120.00128 * 148.38758 * 14 13 12 17 17 N 1.31616 * 120.00257 * 349.80503 * 16 14 13 18 18 Si 1.86811 * 119.99802 * 169.80953 * 16 14 13 19 19 H 1.48497 * 109.46992 * 59.99763 * 18 16 14 20 20 H 1.48493 * 109.47056 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46881 * 299.99790 * 18 16 14 22 22 C 1.46925 * 118.73698 * 306.38129 * 13 12 11 23 23 C 1.53040 * 109.46212 * 154.96827 * 10 9 7 24 24 N 1.33092 * 119.02538 * 0.02562 * 5 4 3 25 25 C 1.31716 * 120.84702 * 359.97438 * 24 5 4 26 26 N 1.31776 * 121.89333 * 0.02562 * 25 24 5 27 27 H 1.08999 * 109.47002 * 59.99734 * 1 2 3 28 28 H 1.08996 * 109.47257 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46737 * 300.00319 * 1 2 3 30 30 H 1.08000 * 120.85438 * 359.74763 * 4 3 2 31 31 H 0.97003 * 119.99194 * 354.77198 * 6 5 4 32 32 H 0.97006 * 119.99928 * 359.97438 * 9 7 6 33 33 H 1.09001 * 109.45662 * 34.99974 * 10 9 7 34 34 H 1.09005 * 109.49686 * 298.55871 * 11 10 9 35 35 H 1.08994 * 109.50289 * 58.65732 * 11 10 9 36 36 H 1.08994 * 109.59992 * 294.86289 * 12 11 10 37 37 H 1.09005 * 109.70127 * 174.50017 * 12 11 10 38 38 H 0.97000 * 120.00170 * 180.02562 * 17 16 14 39 39 H 1.08994 * 109.59006 * 293.82243 * 22 13 12 40 40 H 1.09005 * 109.70889 * 173.46753 * 22 13 12 41 41 H 1.08995 * 109.49637 * 301.33547 * 23 10 9 42 42 H 1.08990 * 109.49833 * 61.43813 * 23 10 9 43 43 H 1.08007 * 119.05220 * 179.97438 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2077 0.0000 4 6 3.4319 1.2918 -0.0005 5 6 4.0158 2.5545 0.0000 6 7 5.3997 2.6919 0.0001 7 6 5.9555 3.9151 -0.1058 8 8 5.2499 4.9052 -0.1099 9 7 7.2935 4.0410 -0.2071 10 6 7.8976 5.3705 -0.3228 11 6 7.8919 5.8074 -1.7894 12 6 8.4923 7.2123 -1.9020 13 7 9.8228 7.2090 -1.2788 14 6 10.9185 7.6514 -1.9707 15 1 10.9672 7.5261 -3.0423 16 6 11.9667 8.2608 -1.2949 17 7 11.8279 8.5952 -0.0295 18 14 13.5744 8.6063 -2.1814 19 1 13.3200 9.5060 -3.3351 20 1 14.5252 9.2586 -1.2458 21 1 14.1555 7.3293 -2.6682 22 6 9.9554 6.7217 0.1010 23 6 9.3384 5.3224 0.1911 24 7 3.2306 3.6291 0.0016 25 6 1.9191 3.5072 0.0021 26 7 1.3294 2.3288 0.0016 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 4.0409 0.3999 0.0031 31 1 5.9649 1.9072 0.0763 32 1 7.8566 3.2511 -0.2036 33 1 7.3241 6.0828 0.2705 34 1 8.4861 5.1094 -2.3793 35 1 6.8676 5.8189 -2.1617 36 1 7.8496 7.9268 -1.3877 37 1 8.5814 7.4908 -2.9520 38 1 12.5603 9.0214 0.4426 39 1 9.4321 7.3961 0.7786 40 1 11.0095 6.6745 0.3744 41 1 9.3435 4.9887 1.2287 42 1 9.9187 4.6290 -0.4175 43 1 1.3095 4.3988 0.0038 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611946434.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:01 Heat of formation + Delta-G solvation = 23.584450 kcal Electronic energy + Delta-G solvation = -26490.418405 eV Core-core repulsion = 22572.817739 eV Total energy + Delta-G solvation = -3917.600665 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.58181 -40.14737 -38.72091 -37.52649 -35.42391 -34.41765 -32.67286 -32.13198 -31.31930 -30.06759 -29.28480 -27.74953 -25.20790 -24.69133 -23.79196 -22.28059 -21.98416 -20.88447 -19.58131 -19.37389 -18.49898 -17.61199 -16.87254 -16.54819 -16.28024 -15.69274 -15.54963 -15.27600 -15.05911 -14.76165 -14.26667 -14.25306 -14.17365 -13.70991 -13.53303 -13.00049 -12.74407 -12.41893 -12.35512 -12.08083 -11.51113 -11.42737 -11.05930 -10.96392 -10.86422 -10.74371 -10.51646 -10.33353 -10.25480 -10.03217 -9.82254 -9.62481 -9.58071 -9.23631 -9.06499 -8.69353 -8.47113 -6.62764 -5.79326 -3.27152 0.72333 1.01172 2.09987 2.74848 3.15887 3.37620 3.43035 3.43833 3.71079 3.78132 3.85339 4.35872 4.48246 4.61528 4.81291 4.92138 4.95371 5.10148 5.22702 5.33462 5.40187 5.49267 5.59362 5.62666 5.87294 6.04964 6.12347 6.25252 6.31289 6.38873 6.54757 6.57774 6.59387 6.70930 6.81315 6.89436 6.96454 7.04167 7.33161 7.64440 7.76963 7.79997 8.06231 8.47385 8.56427 9.21886 9.82974 10.41598 11.29215 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.047807 B = 0.002107 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.544449 B =13286.177566 C =13413.310859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.303 6.303 3 C 0.381 3.619 4 C -0.293 4.293 5 C 0.455 3.545 6 N -0.664 5.664 7 C 0.689 3.311 8 O -0.520 6.520 9 N -0.732 5.732 10 C 0.169 3.831 11 C -0.140 4.140 12 C 0.148 3.852 13 N -0.593 5.593 14 C -0.253 4.253 15 H 0.064 0.936 16 C 0.004 3.996 17 N -0.906 5.906 18 Si 0.906 3.094 19 H -0.282 1.282 20 H -0.290 1.290 21 H -0.284 1.284 22 C 0.175 3.825 23 C -0.147 4.147 24 N -0.525 5.525 25 C 0.364 3.636 26 N -0.602 5.602 27 H 0.062 0.938 28 H 0.098 0.902 29 H 0.062 0.938 30 H 0.151 0.849 31 H 0.415 0.585 32 H 0.392 0.608 33 H 0.084 0.916 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.021 0.979 37 H 0.056 0.944 38 H 0.255 0.745 39 H 0.021 0.979 40 H 0.093 0.907 41 H 0.054 0.946 42 H 0.059 0.941 43 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.875 -18.603 1.744 25.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.207 6.207 3 C 0.196 3.804 4 C -0.320 4.320 5 C 0.215 3.785 6 N -0.312 5.312 7 C 0.388 3.612 8 O -0.390 6.390 9 N -0.387 5.387 10 C 0.065 3.935 11 C -0.180 4.180 12 C 0.021 3.979 13 N -0.315 5.315 14 C -0.382 4.382 15 H 0.081 0.919 16 C -0.195 4.195 17 N -0.550 5.550 18 Si 0.735 3.265 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.210 1.210 22 C 0.049 3.951 23 C -0.187 4.187 24 N -0.250 5.250 25 C 0.075 3.925 26 N -0.335 5.335 27 H 0.081 0.919 28 H 0.117 0.883 29 H 0.081 0.919 30 H 0.169 0.831 31 H 0.252 0.748 32 H 0.225 0.775 33 H 0.102 0.898 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.039 0.961 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.040 0.960 40 H 0.112 0.888 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -18.691 -17.009 1.830 25.338 hybrid contribution 1.655 -1.350 -0.362 2.166 sum -17.036 -18.359 1.468 25.089 Atomic orbital electron populations 1.22946 0.76509 1.03236 1.02917 1.86212 1.23474 1.24101 1.86963 1.19609 0.88653 0.85011 0.87146 1.20960 0.93474 0.98311 1.19269 1.18015 0.84625 0.88471 0.87373 1.42835 1.03607 1.10304 1.74449 1.16101 0.83173 0.82878 0.79007 1.91072 1.60171 1.34874 1.52844 1.45652 1.04148 1.10923 1.77965 1.21004 0.93992 0.81081 0.97392 1.22401 1.00016 1.00149 0.95458 1.20886 0.87449 0.92275 0.97336 1.44043 1.02161 1.73093 1.12248 1.19133 0.95440 1.31845 0.91828 0.91852 1.25183 0.99888 0.97837 0.96567 1.69946 1.31720 1.43902 1.09430 0.86329 0.83316 0.78058 0.78763 1.20856 1.21612 1.21028 1.20763 1.01135 0.87419 0.85831 1.22578 0.93726 1.03088 0.99295 1.68577 1.05677 1.30947 1.19755 1.24723 0.87531 0.93702 0.86535 1.68144 1.41621 0.99153 1.24616 0.91906 0.88343 0.91917 0.83134 0.74778 0.77481 0.89790 0.92434 0.92644 0.96068 0.92558 0.93498 0.96040 0.88847 0.92727 0.92202 0.78024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.41 101.05 1.05 1.29 16 2 O -0.30 -2.80 10.49 -18.31 -0.19 -2.99 16 3 C 0.38 4.04 7.52 -16.77 -0.13 3.92 16 4 C -0.29 -2.89 9.99 -38.97 -0.39 -3.28 16 5 C 0.45 5.51 7.45 -154.37 -1.15 4.36 16 6 N -0.66 -7.17 5.39 -15.72 -0.08 -7.26 16 7 C 0.69 10.09 8.49 -86.93 -0.74 9.35 16 8 O -0.52 -9.90 14.31 5.30 0.08 -9.82 16 9 N -0.73 -9.76 5.08 -58.64 -0.30 -10.06 16 10 C 0.17 2.86 2.42 -67.89 -0.16 2.70 16 11 C -0.14 -2.53 5.65 -26.61 -0.15 -2.69 16 12 C 0.15 3.16 6.52 -3.71 -0.02 3.14 16 13 N -0.59 -14.66 2.98 -172.32 -0.51 -15.17 16 14 C -0.25 -6.84 9.58 -15.06 -0.14 -6.98 16 15 H 0.06 1.69 7.85 -52.49 -0.41 1.27 16 16 C 0.00 0.11 5.06 -17.43 -0.09 0.02 16 17 N -0.91 -25.87 11.04 55.49 0.61 -25.26 16 18 Si 0.91 21.41 29.57 -169.99 -5.03 16.39 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 C 0.18 4.05 5.25 -3.71 -0.02 4.03 16 23 C -0.15 -2.60 5.55 -26.61 -0.15 -2.75 16 24 N -0.53 -7.42 8.04 -13.80 -0.11 -7.53 16 25 C 0.36 4.15 12.28 -92.24 -1.13 3.02 16 26 N -0.60 -6.62 9.38 -14.71 -0.14 -6.75 16 27 H 0.06 0.39 8.12 -51.93 -0.42 -0.03 16 28 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.39 8.12 -51.93 -0.42 -0.03 16 30 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 31 H 0.42 2.70 8.74 -40.82 -0.36 2.35 16 32 H 0.39 3.92 8.62 -40.82 -0.35 3.56 16 33 H 0.08 1.63 7.58 -51.93 -0.39 1.23 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 38 H 0.25 7.06 8.31 -40.82 -0.34 6.73 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.09 2.40 6.11 -51.93 -0.32 2.09 16 41 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.20 1.68 8.06 -52.48 -0.42 1.26 16 LS Contribution 358.24 15.07 5.40 5.40 Total: -1.00 -34.20 358.24 -9.52 -43.72 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -6.03 Total: 3.21 kcal Atomic # 6 Polarization: 19.35 SS G_CDS: -3.22 Total: 16.13 kcal Atomic # 7 Polarization: -71.50 SS G_CDS: -0.53 Total: -72.03 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: -0.12 Total: -12.81 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.20 -9.52 -43.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611946434.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.306 kcal (2) G-P(sol) polarization free energy of solvation -34.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds