Wall clock time and date at job start Fri Apr 10 2020 18:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 110.21878 * 2 1 4 4 C 1.54696 * 110.36698 * 238.13031 * 2 1 3 5 5 C 1.54627 * 101.66880 * 215.63922 * 4 2 1 6 6 H 1.09001 * 110.48881 * 265.90534 * 5 4 2 7 7 N 1.46502 * 110.48815 * 143.39850 * 5 4 2 8 8 C 1.34770 * 120.00633 * 156.84048 * 7 5 4 9 9 O 1.21590 * 119.99616 * 359.97438 * 8 7 5 10 10 N 1.34773 * 120.00570 * 179.97438 * 8 7 5 11 11 C 1.46497 * 120.00134 * 179.97438 * 10 8 7 12 12 C 1.50702 * 109.47005 * 179.97438 * 11 10 8 13 13 H 1.08007 * 119.99834 * 0.02562 * 12 11 10 14 14 C 1.37880 * 120.00162 * 179.72263 * 12 11 10 15 15 N 1.31516 * 119.99465 * 0.27925 * 14 12 11 16 16 Si 1.86800 * 120.00088 * 180.27770 * 14 12 11 17 17 H 1.48506 * 109.47107 * 0.02562 * 16 14 12 18 18 H 1.48493 * 109.46884 * 120.00066 * 16 14 12 19 19 H 1.48504 * 109.47021 * 240.00107 * 16 14 12 20 20 C 1.51278 * 104.31296 * 24.65093 * 5 4 2 21 21 O 1.21308 * 124.93978 * 163.78143 * 20 5 4 22 22 N 1.34420 * 110.11777 * 343.81303 * 20 5 4 23 23 C 1.40758 * 124.35167 * 179.61837 * 22 20 5 24 24 C 1.40260 * 126.07601 * 293.91506 * 23 22 20 25 25 N 1.30831 * 108.33278 * 179.81999 * 24 23 22 26 26 N 1.40068 * 108.36920 * 0.43814 * 25 24 23 27 27 C 1.46503 * 126.05040 * 179.71740 * 26 25 24 28 28 C 1.35749 * 126.08566 * 114.22678 * 23 22 20 29 29 H 1.08993 * 109.46478 * 302.95756 * 1 2 3 30 30 H 1.08996 * 109.47474 * 62.95909 * 1 2 3 31 31 H 1.09001 * 109.46628 * 182.95859 * 1 2 3 32 32 H 1.08998 * 111.08549 * 97.52298 * 4 2 1 33 33 H 1.08993 * 110.94768 * 333.69518 * 4 2 1 34 34 H 0.97005 * 119.99317 * 336.83545 * 7 5 4 35 35 H 0.97005 * 119.99381 * 359.97438 * 10 8 7 36 36 H 1.08997 * 109.47067 * 60.00594 * 11 10 8 37 37 H 1.08993 * 109.47133 * 299.99923 * 11 10 8 38 38 H 0.96999 * 119.99331 * 179.97438 * 15 14 12 39 39 H 1.08007 * 125.83217 * 359.97438 * 24 23 22 40 40 H 1.08994 * 109.47334 * 269.99901 * 27 26 25 41 41 H 1.08995 * 109.46995 * 30.00770 * 27 26 25 42 42 H 1.09001 * 109.46489 * 150.00260 * 27 26 25 43 43 H 1.08003 * 126.21948 * 0.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9067 1.0229 0.0000 4 6 2.0684 -0.7657 -1.2316 5 6 3.3310 -1.4437 -0.6510 6 1 4.2125 -0.8293 -0.8343 7 7 3.5084 -2.7780 -1.2293 8 6 4.7292 -3.3487 -1.2454 9 8 5.6835 -2.7559 -0.7802 10 7 4.8924 -4.5764 -1.7769 11 6 6.2196 -5.1964 -1.7948 12 6 6.1299 -6.5566 -2.4375 13 1 5.1794 -6.9223 -2.7971 14 6 7.2624 -7.3315 -2.5721 15 7 8.4198 -6.8858 -2.1347 16 14 7.1526 -9.0142 -3.3758 17 1 5.7483 -9.2794 -3.7792 18 1 8.0266 -9.0475 -4.5758 19 1 7.5958 -10.0531 -2.4116 20 6 3.0536 -1.5424 0.8329 21 8 3.6593 -2.2532 1.6071 22 7 2.0379 -0.7284 1.1685 23 6 1.5275 -0.5916 2.4731 24 6 0.8605 -1.5834 3.2072 25 7 0.5413 -1.0865 4.3747 26 7 0.9831 0.2417 4.4249 27 6 0.8213 1.1621 5.5532 28 6 1.5878 0.5252 3.2423 29 1 -0.3632 0.5591 0.8623 30 1 -0.3634 0.4672 -0.9153 31 1 -0.3632 -1.0263 0.0530 32 1 2.3297 -0.0791 -2.0368 33 1 1.3486 -1.5093 -1.5734 34 1 2.7471 -3.2507 -1.6007 35 1 4.1310 -5.0494 -2.1477 36 1 6.5855 -5.3011 -0.7735 37 1 6.9058 -4.5696 -2.3642 38 1 9.2164 -7.4311 -2.2290 39 1 0.6491 -2.5867 2.8678 40 1 -0.1185 1.7041 5.4480 41 1 0.8124 0.5966 6.4849 42 1 1.6498 1.8703 5.5659 43 1 2.0351 1.4682 2.9643 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787356278.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:17 Heat of formation + Delta-G solvation = -3.804833 kcal Electronic energy + Delta-G solvation = -26758.209827 eV Core-core repulsion = 22839.421473 eV Total energy + Delta-G solvation = -3918.788354 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.53478 -41.53676 -40.35535 -37.86463 -36.30447 -35.71282 -34.41564 -34.08277 -32.61797 -31.09673 -30.01070 -28.83787 -27.31262 -25.51206 -24.59093 -23.09745 -22.67497 -21.93276 -21.76246 -20.30204 -19.89144 -18.50259 -18.10911 -17.77355 -17.52201 -16.80775 -16.57070 -16.34514 -16.16147 -15.78595 -15.38512 -15.14821 -15.04052 -14.84845 -14.71109 -14.05022 -14.03919 -13.94433 -13.60939 -13.55097 -13.52475 -13.27374 -12.89979 -12.84849 -12.74307 -12.37461 -12.20410 -11.96788 -11.84351 -11.50683 -11.43520 -11.24091 -10.80554 -10.51414 -10.32973 -10.11075 -9.61357 -9.18522 -8.27300 -6.43918 0.73230 1.22099 1.42299 1.43787 1.46044 1.59044 1.62783 1.90397 2.12084 2.32131 2.40984 3.07469 3.37335 3.46152 3.57690 3.65962 3.87166 3.90762 4.03532 4.19670 4.33249 4.42361 4.44770 4.64113 4.69395 4.75311 4.83892 4.90754 5.03327 5.06057 5.11140 5.22399 5.27784 5.40573 5.44964 5.50066 5.67991 5.79219 5.86167 6.04175 6.05636 6.23809 6.53709 6.68124 7.18877 7.25076 7.31580 7.74086 8.85637 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.022084 B = 0.002484 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.600421 B =11267.567317 C =11812.135528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.129 3.871 3 H 0.113 0.887 4 C -0.113 4.113 5 C 0.135 3.865 6 H 0.110 0.890 7 N -0.715 5.715 8 C 0.694 3.306 9 O -0.641 6.641 10 N -0.722 5.722 11 C 0.286 3.714 12 C -0.552 4.552 13 H 0.085 0.915 14 C 0.000 4.000 15 N -0.932 5.932 16 Si 0.989 3.011 17 H -0.252 1.252 18 H -0.276 1.276 19 H -0.281 1.281 20 C 0.492 3.508 21 O -0.565 6.565 22 N -0.534 5.534 23 C -0.022 4.022 24 C 0.043 3.957 25 N -0.317 5.317 26 N -0.372 5.372 27 C 0.094 3.906 28 C 0.070 3.930 29 H 0.055 0.945 30 H 0.101 0.899 31 H 0.052 0.948 32 H 0.137 0.863 33 H 0.111 0.889 34 H 0.416 0.584 35 H 0.405 0.595 36 H -0.023 1.023 37 H -0.011 1.011 38 H 0.269 0.731 39 H 0.175 0.825 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.115 0.885 43 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.639 22.182 4.856 33.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.028 3.972 3 H 0.130 0.870 4 C -0.151 4.151 5 C 0.025 3.975 6 H 0.128 0.872 7 N -0.373 5.373 8 C 0.394 3.606 9 O -0.523 6.523 10 N -0.376 5.376 11 C 0.163 3.837 12 C -0.590 4.590 13 H 0.103 0.897 14 C -0.199 4.199 15 N -0.571 5.571 16 Si 0.812 3.188 17 H -0.175 1.175 18 H -0.202 1.202 19 H -0.207 1.207 20 C 0.278 3.722 21 O -0.442 6.442 22 N -0.264 5.264 23 C -0.124 4.124 24 C -0.144 4.144 25 N -0.140 5.140 26 N -0.155 5.155 27 C -0.045 4.045 28 C -0.079 4.079 29 H 0.075 0.925 30 H 0.120 0.880 31 H 0.071 0.929 32 H 0.155 0.845 33 H 0.129 0.871 34 H 0.253 0.747 35 H 0.241 0.759 36 H -0.005 1.005 37 H 0.007 0.993 38 H 0.077 0.923 39 H 0.192 0.808 40 H 0.116 0.884 41 H 0.107 0.893 42 H 0.134 0.866 43 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -23.867 22.176 7.010 33.325 hybrid contribution 0.563 -1.392 -0.794 1.699 sum -23.304 20.784 6.216 31.838 Atomic orbital electron populations 1.21994 0.92054 1.02624 1.03783 1.22199 0.96464 0.96670 0.81864 0.86969 1.23193 0.93077 1.00874 0.97918 1.21519 1.02543 0.84785 0.88640 0.87203 1.44620 1.08310 1.19010 1.65313 1.16308 0.83872 0.81814 0.78631 1.90847 1.41710 1.65267 1.54462 1.45245 1.12739 1.16140 1.63460 1.18397 0.79080 0.92100 0.94144 1.21634 0.96137 1.00918 1.40348 0.89652 1.26129 0.94396 1.03535 0.95841 1.70169 1.00230 1.39775 1.46921 0.85049 0.79196 0.76922 0.77633 1.17485 1.20175 1.20669 1.22148 0.78913 0.78868 0.92234 1.90746 1.52963 1.42020 1.58450 1.45237 1.32550 1.42888 1.05758 1.17414 1.10767 0.95499 0.88762 1.24063 0.97728 1.00678 0.91930 1.77324 1.23910 0.92489 1.20248 1.48824 1.43853 1.09298 1.13516 1.22287 1.05362 0.91125 0.85709 1.22988 0.98010 1.01257 0.85659 0.92549 0.88029 0.92934 0.84519 0.87101 0.74654 0.75949 1.00527 0.99287 0.92262 0.80804 0.88435 0.89310 0.86620 0.76885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 8.87 71.98 0.64 -0.46 16 2 C 0.13 1.40 3.88 45.52 0.18 1.57 16 3 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 4 C -0.11 -1.20 6.40 31.73 0.20 -0.99 16 5 C 0.14 3.45 3.25 44.98 0.15 3.60 16 6 H 0.11 3.18 7.61 -2.39 -0.02 3.16 16 7 N -0.71 -21.68 5.14 -457.86 -2.36 -24.04 16 8 C 0.69 31.23 8.56 179.06 1.53 32.76 16 9 O -0.64 -35.92 16.02 -4.00 -0.06 -35.98 16 10 N -0.72 -33.31 5.55 -482.32 -2.68 -35.99 16 11 C 0.29 16.81 5.43 85.63 0.46 17.28 16 12 C -0.55 -31.36 9.28 25.60 0.24 -31.12 16 13 H 0.09 4.35 7.60 -2.91 -0.02 4.33 16 14 C 0.00 0.01 5.46 84.66 0.46 0.47 16 15 N -0.93 -58.40 13.29 21.45 0.28 -58.11 16 16 Si 0.99 43.67 29.54 68.60 2.03 45.70 16 17 H -0.25 -10.19 7.11 99.48 0.71 -9.48 16 18 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 19 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 20 C 0.49 15.72 7.63 87.90 0.67 16.39 16 21 O -0.57 -25.97 17.71 -3.12 -0.06 -26.03 16 22 N -0.53 -11.56 3.03 -605.76 -1.83 -13.40 16 23 C -0.02 -0.51 4.99 37.62 0.19 -0.32 16 24 C 0.04 1.11 12.03 85.33 1.03 2.14 16 25 N -0.32 -7.99 12.56 -56.76 -0.71 -8.70 16 26 N -0.37 -6.55 4.04 -368.49 -1.49 -8.04 16 27 C 0.09 0.69 11.48 127.77 1.47 2.15 16 28 C 0.07 1.16 11.56 83.50 0.97 2.12 16 29 H 0.06 0.50 7.87 -2.39 -0.02 0.49 16 30 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.05 0.54 8.14 -2.39 -0.02 0.53 16 32 H 0.14 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.11 0.82 7.58 -2.39 -0.02 0.80 16 34 H 0.42 9.07 8.42 -92.70 -0.78 8.29 16 35 H 0.41 15.22 8.34 -92.70 -0.77 14.45 16 36 H -0.02 -1.57 8.14 -2.39 -0.02 -1.59 16 37 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 38 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 39 H 0.17 4.46 8.06 -2.91 -0.02 4.44 16 40 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 41 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 43 H 0.21 1.74 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -98.58 372.14 0.80 -97.78 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: -0.50 Total: 21.22 kcal Atomic # 6 Polarization: 37.40 SS G_CDS: 8.18 Total: 45.58 kcal Atomic # 7 Polarization: -139.49 SS G_CDS: -8.78 Total: -148.27 kcal Atomic # 8 Polarization: -61.89 SS G_CDS: -0.12 Total: -62.01 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -98.58 0.80 -97.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787356278.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.971 kcal (2) G-P(sol) polarization free energy of solvation -98.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds