Wall clock time and date at job start Fri Apr 10 2020 18:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34780 * 119.86385 * 2 1 4 4 N 1.30489 * 121.69606 * 179.74426 * 3 2 1 5 5 C 1.34157 * 121.31888 * 0.54376 * 4 3 2 6 6 N 1.38525 * 120.21709 * 179.71338 * 5 4 3 7 7 C 1.34778 * 119.99888 * 0.02562 * 6 5 4 8 8 O 1.21561 * 120.00388 * 354.86460 * 7 6 5 9 9 N 1.34782 * 119.99652 * 174.86030 * 7 6 5 10 10 C 1.47086 * 120.87567 * 184.72184 * 9 7 6 11 11 C 1.53691 * 108.27458 * 128.75586 * 10 9 7 12 12 N 1.46897 * 109.25983 * 54.08129 * 11 10 9 13 13 C 1.46905 * 110.99998 * 172.61114 * 12 11 10 14 14 C 1.50700 * 109.46625 * 294.29449 * 13 12 11 15 15 H 1.08000 * 120.00568 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99766 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00122 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99989 * 180.02562 * 16 14 13 19 19 H 1.48510 * 109.47200 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47285 * 120.00082 * 18 16 14 21 21 H 1.48500 * 109.47481 * 240.00217 * 18 16 14 22 22 C 1.46902 * 111.26806 * 296.75491 * 12 11 10 23 23 C 1.47070 * 120.88663 * 4.99552 * 9 7 6 24 24 C 1.38322 * 119.56522 * 359.72837 * 5 4 3 25 25 C 1.34957 * 119.86440 * 180.28200 * 2 1 3 26 26 O 1.22049 * 120.64442 * 359.95331 * 25 2 1 27 27 H 1.08997 * 109.47094 * 269.71729 * 1 2 3 28 28 H 1.09002 * 109.46899 * 149.72124 * 1 2 3 29 29 H 1.09001 * 109.46903 * 29.72253 * 1 2 3 30 30 H 1.07998 * 119.15364 * 0.02562 * 3 2 1 31 31 H 0.97006 * 120.00173 * 180.02562 * 6 5 4 32 32 H 1.09006 * 109.62448 * 248.51730 * 10 9 7 33 33 H 1.08996 * 109.62883 * 9.09943 * 10 9 7 34 34 H 1.08999 * 109.65100 * 294.07057 * 11 10 9 35 35 H 1.09006 * 109.44153 * 173.95817 * 11 10 9 36 36 H 1.08992 * 109.47359 * 54.29887 * 13 12 11 37 37 H 1.09007 * 109.46722 * 174.30309 * 13 12 11 38 38 H 0.96999 * 120.00488 * 180.02562 * 17 16 14 39 39 H 1.09007 * 109.49356 * 303.14421 * 22 12 11 40 40 H 1.08993 * 109.49608 * 183.06572 * 22 12 11 41 41 H 1.09002 * 109.62601 * 350.90220 * 23 9 7 42 42 H 1.09003 * 109.63002 * 111.47353 * 23 9 7 43 43 H 1.08008 * 120.78328 * 180.02562 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1362 1.1688 0.0000 4 7 3.4404 1.2106 0.0050 5 6 4.1740 0.0874 -0.0006 6 7 5.5575 0.1583 -0.0011 7 6 6.1707 1.3585 0.0045 8 8 5.5135 2.3773 -0.0843 9 7 7.5126 1.4291 0.1085 10 6 8.1937 2.7279 0.2203 11 6 9.1386 2.6740 1.4312 12 7 10.0310 1.5148 1.2982 13 6 11.0646 1.5236 2.3421 14 6 11.9726 2.7092 2.1398 15 1 11.7990 3.3885 1.3183 16 6 13.0251 2.9268 3.0035 17 7 13.2369 2.0995 4.0036 18 14 14.1502 4.3968 2.7532 19 1 13.7007 5.1677 1.5661 20 1 14.1021 5.2674 3.9553 21 1 15.5417 3.9245 2.5394 22 6 9.2749 0.2554 1.3168 23 6 8.3351 0.2099 0.1073 24 6 3.5400 -1.1420 -0.0061 25 6 2.1370 -1.1703 -0.0058 26 8 1.5362 -2.2327 -0.0101 27 1 -0.3633 -0.0051 1.0276 28 1 -0.3633 -0.8875 -0.5182 29 1 -0.3633 0.8925 -0.5095 30 1 1.5802 2.0947 0.0004 31 1 6.0849 -0.6558 -0.0055 32 1 8.7668 2.9200 -0.6869 33 1 7.4559 3.5171 0.3647 34 1 8.5554 2.5810 2.3473 35 1 9.7322 3.5875 1.4692 36 1 10.5913 1.5913 3.3215 37 1 11.6482 0.6048 2.2832 38 1 13.9771 2.2527 4.6114 39 1 8.6897 0.1959 2.2346 40 1 9.9672 -0.5852 1.2714 41 1 7.6908 -0.6665 0.1770 42 1 8.9214 0.1646 -0.8105 43 1 4.1113 -2.0586 -0.0102 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888494502.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:26 Heat of formation + Delta-G solvation = -2.931854 kcal Electronic energy + Delta-G solvation = -26766.055206 eV Core-core repulsion = 22847.304707 eV Total energy + Delta-G solvation = -3918.750499 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.86407 -41.64045 -39.47052 -38.52447 -37.10034 -36.05612 -34.87373 -34.25327 -32.20654 -31.62061 -30.04528 -28.41828 -27.22375 -25.73835 -25.09033 -24.25223 -23.71817 -22.33569 -21.07486 -19.84074 -19.09216 -18.47571 -18.30148 -18.00988 -17.45771 -16.97555 -16.72859 -16.65211 -16.12174 -15.96396 -15.50324 -15.43387 -15.25475 -15.06656 -14.79889 -14.56313 -14.25631 -14.11614 -13.89638 -13.55892 -13.41003 -13.10749 -12.74791 -12.60951 -12.39505 -12.33415 -12.26472 -12.16009 -11.81626 -11.64917 -11.33558 -11.26076 -10.66588 -10.61288 -10.45543 -9.79864 -9.37329 -9.05452 -8.20478 -6.29994 -0.39644 0.82904 1.16621 1.42600 1.43827 1.56746 1.59406 1.93749 2.40764 2.43821 2.69048 3.12138 3.16467 3.21881 3.66661 3.83903 3.90377 4.02286 4.06478 4.15624 4.24857 4.36216 4.43369 4.50227 4.55651 4.57427 4.70342 4.83674 4.86223 4.95421 5.01208 5.04752 5.15151 5.19851 5.29420 5.45071 5.54095 5.64172 5.70371 6.03656 6.23510 6.46885 6.58301 6.80721 6.86172 6.88755 7.32230 7.39956 8.90794 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.034489 B = 0.002295 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.664727 B =12197.492300 C =12580.752015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.530 5.530 3 C 0.413 3.587 4 N -0.557 5.557 5 C 0.441 3.559 6 N -0.652 5.652 7 C 0.698 3.302 8 O -0.558 6.558 9 N -0.621 5.621 10 C 0.147 3.853 11 C 0.055 3.945 12 N -0.538 5.538 13 C 0.208 3.792 14 C -0.521 4.521 15 H 0.067 0.933 16 C 0.001 3.999 17 N -0.935 5.935 18 Si 0.968 3.032 19 H -0.261 1.261 20 H -0.282 1.282 21 H -0.280 1.280 22 C 0.036 3.964 23 C 0.122 3.878 24 C -0.372 4.372 25 C 0.523 3.477 26 O -0.592 6.592 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.134 0.866 30 H 0.261 0.739 31 H 0.430 0.570 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.010 0.990 35 H 0.082 0.918 36 H -0.042 1.042 37 H 0.011 0.989 38 H 0.264 0.736 39 H 0.019 0.981 40 H 0.091 0.909 41 H 0.108 0.892 42 H 0.095 0.905 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.669 -2.596 -10.285 25.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.246 5.246 3 C 0.129 3.871 4 N -0.282 5.282 5 C 0.220 3.780 6 N -0.301 5.301 7 C 0.399 3.601 8 O -0.432 6.432 9 N -0.358 5.358 10 C 0.024 3.976 11 C -0.074 4.074 12 N -0.262 5.262 13 C 0.082 3.918 14 C -0.559 4.559 15 H 0.085 0.915 16 C -0.197 4.197 17 N -0.576 5.576 18 Si 0.793 3.207 19 H -0.184 1.184 20 H -0.208 1.208 21 H -0.206 1.206 22 C -0.093 4.093 23 C -0.001 4.001 24 C -0.402 4.402 25 C 0.326 3.674 26 O -0.476 6.476 27 H 0.109 0.891 28 H 0.096 0.904 29 H 0.152 0.848 30 H 0.277 0.723 31 H 0.273 0.727 32 H 0.103 0.897 33 H 0.110 0.890 34 H 0.028 0.972 35 H 0.100 0.900 36 H -0.024 1.024 37 H 0.029 0.971 38 H 0.072 0.928 39 H 0.037 0.963 40 H 0.109 0.891 41 H 0.125 0.875 42 H 0.113 0.887 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -23.520 -1.842 -10.646 25.883 hybrid contribution 0.710 -0.902 1.351 1.773 sum -22.809 -2.744 -9.295 24.783 Atomic orbital electron populations 1.22502 0.74197 1.06688 1.05475 1.46875 1.12249 1.07545 1.57943 1.25992 0.87648 0.91034 0.82461 1.68507 1.05434 1.28245 1.26049 1.18456 0.83888 0.89534 0.86140 1.42740 1.04011 1.09764 1.73556 1.15971 0.82076 0.83645 0.78378 1.90990 1.63765 1.33576 1.54834 1.47536 1.03375 1.09259 1.75641 1.21681 0.93957 0.83905 0.98074 1.22397 0.93599 0.95710 0.95680 1.62008 1.13157 1.01846 1.49233 1.19378 0.89109 0.96704 0.86603 1.21503 1.11857 1.10385 1.12146 0.91452 1.25906 0.99365 0.99692 0.94783 1.70083 1.31471 1.38954 1.17072 0.85348 0.78256 0.78826 0.78272 1.18438 1.20784 1.20576 1.22526 0.96221 0.93711 0.96812 1.21947 0.92954 0.85990 0.99193 1.22225 0.93576 0.97990 1.26408 1.16754 0.88566 0.83483 0.78573 1.90924 1.71040 1.29905 1.55712 0.89102 0.90356 0.84755 0.72337 0.72732 0.89737 0.88973 0.97154 0.89958 1.02422 0.97123 0.92762 0.96291 0.89120 0.87460 0.88681 0.82335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.31 10.39 127.77 1.33 1.64 16 2 N -0.53 -7.48 2.97 -679.42 -2.02 -9.50 16 3 C 0.41 5.07 11.46 180.35 2.07 7.13 16 4 N -0.56 -12.28 7.95 -196.55 -1.56 -13.84 16 5 C 0.44 9.97 7.42 132.50 0.98 10.95 16 6 N -0.65 -14.03 5.28 -322.21 -1.70 -15.73 16 7 C 0.70 19.24 8.26 179.05 1.48 20.72 16 8 O -0.56 -18.74 14.08 -3.91 -0.06 -18.79 16 9 N -0.62 -16.49 3.00 -835.08 -2.51 -19.00 16 10 C 0.15 4.35 6.61 86.50 0.57 4.93 16 11 C 0.06 2.04 5.47 86.54 0.47 2.51 16 12 N -0.54 -21.38 4.62 -898.88 -4.15 -25.53 16 13 C 0.21 10.60 4.72 85.56 0.40 11.01 16 14 C -0.52 -28.34 8.41 25.60 0.22 -28.13 16 15 H 0.07 3.56 7.13 -2.91 -0.02 3.54 16 16 C 0.00 0.03 5.46 84.66 0.46 0.49 16 17 N -0.94 -55.23 13.29 21.45 0.28 -54.95 16 18 Si 0.97 43.25 29.54 68.60 2.03 45.27 16 19 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 20 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 21 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 22 C 0.04 1.12 5.62 86.38 0.49 1.60 16 23 C 0.12 2.68 6.59 86.35 0.57 3.24 16 24 C -0.37 -8.13 9.94 22.80 0.23 -7.91 16 25 C 0.52 12.16 7.42 84.72 0.63 12.79 16 26 O -0.59 -17.92 16.76 -5.48 -0.09 -18.01 16 27 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.08 0.80 7.44 -2.39 -0.02 0.78 16 29 H 0.13 -0.39 8.00 -2.39 -0.02 -0.41 16 30 H 0.26 0.17 8.01 -2.91 -0.02 0.15 16 31 H 0.43 6.51 6.19 -92.70 -0.57 5.93 16 32 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 33 H 0.09 2.75 7.09 -2.39 -0.02 2.74 16 34 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.08 3.28 6.67 -2.38 -0.02 3.27 16 36 H -0.04 -2.37 8.12 -2.39 -0.02 -2.39 16 37 H 0.01 0.58 7.97 -2.38 -0.02 0.56 16 38 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 39 H 0.02 0.62 8.14 -2.38 -0.02 0.60 16 40 H 0.09 2.65 7.99 -2.39 -0.02 2.63 16 41 H 0.11 1.51 5.63 -2.39 -0.01 1.50 16 42 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.16 3.08 8.06 -2.91 -0.02 3.06 16 Total: -1.00 -82.44 353.92 0.59 -81.85 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: 0.47 Total: 7.25 kcal Atomic # 6 Polarization: 31.09 SS G_CDS: 9.89 Total: 40.98 kcal Atomic # 7 Polarization: -126.90 SS G_CDS: -11.66 Total: -138.55 kcal Atomic # 8 Polarization: -36.66 SS G_CDS: -0.15 Total: -36.80 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Total: -82.44 0.59 -81.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888494502.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.921 kcal (2) G-P(sol) polarization free energy of solvation -82.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds