Wall clock time and date at job start Fri Apr 10 2020 18:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46906 * 110.99728 * 2 1 4 4 C 1.50699 * 109.47140 * 66.04805 * 3 2 1 5 5 H 1.08003 * 119.99962 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99861 * 180.02562 * 4 3 2 7 7 N 1.31522 * 120.00244 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99980 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.46950 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47074 * 119.99839 * 8 6 4 11 11 H 1.48505 * 109.46997 * 239.99833 * 8 6 4 12 12 C 1.46905 * 110.99850 * 236.04849 * 2 1 3 13 13 C 1.53000 * 109.47114 * 293.94896 * 12 2 1 14 14 H 1.09000 * 109.46550 * 60.00064 * 13 12 2 15 15 O 1.42901 * 109.46928 * 300.00575 * 13 12 2 16 16 C 1.52996 * 109.47000 * 180.02562 * 13 12 2 17 17 N 1.46899 * 109.46798 * 185.00066 * 16 13 12 18 18 C 1.46901 * 111.00076 * 179.97438 * 17 16 13 19 19 C 1.50693 * 109.47360 * 180.02562 * 18 17 16 20 20 C 1.37871 * 119.94135 * 104.72757 * 19 18 17 21 21 C 1.39670 * 119.87623 * 179.75112 * 20 19 18 22 22 C 1.43199 * 120.12478 * 180.24995 * 21 20 19 23 23 N 8.85962 * 124.44196 * 188.73335 * 13 1 2 24 24 C 1.39711 * 119.75033 * 0.54214 * 21 20 19 25 25 C 1.37825 * 119.86968 * 359.71069 * 24 21 20 26 26 C 1.38622 * 119.93868 * 285.00122 * 19 18 17 27 27 F 1.35100 * 119.87452 * 359.97438 * 26 19 18 28 28 H 1.08996 * 109.47030 * 59.99921 * 1 2 3 29 29 H 1.08999 * 109.46702 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46890 * 299.99929 * 1 2 3 31 31 H 1.09004 * 109.47040 * 186.04743 * 3 2 1 32 32 H 1.09000 * 109.47033 * 306.04695 * 3 2 1 33 33 H 0.96992 * 120.00038 * 179.97438 * 7 6 4 34 34 H 1.08997 * 109.46807 * 53.95411 * 12 2 1 35 35 H 1.09000 * 109.46636 * 173.95277 * 12 2 1 36 36 H 0.96697 * 113.99735 * 299.99403 * 15 13 12 37 37 H 1.08995 * 109.47058 * 304.99907 * 16 13 12 38 38 H 1.08998 * 109.46953 * 65.00454 * 16 13 12 39 39 H 1.00896 * 111.00687 * 303.95477 * 17 16 13 40 40 H 1.09005 * 109.47140 * 300.00367 * 18 17 16 41 41 H 1.09001 * 109.46992 * 59.99753 * 18 17 16 42 42 H 1.08008 * 120.05903 * 0.02562 * 20 19 18 43 43 H 1.07999 * 120.06328 * 179.68643 * 24 21 20 44 44 H 1.08004 * 119.93352 * 180.02562 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0739 1.5115 2.0485 6 6 2.0267 3.3495 1.5284 7 7 2.7118 4.0020 0.6149 8 14 1.5829 4.1868 3.1382 9 1 0.8157 3.2441 3.9915 10 1 2.8249 4.5945 3.8430 11 1 0.7549 5.3877 2.8597 12 6 1.9954 -0.7660 -1.1377 13 6 1.6315 -2.2426 -0.9704 14 1 0.5472 -2.3474 -0.9323 15 8 2.2010 -2.7391 0.2426 16 6 2.1803 -3.0404 -2.1549 17 7 1.7299 -4.4352 -2.0566 18 6 2.2384 -5.2331 -3.1803 19 6 1.7564 -6.6545 -3.0458 20 6 0.7385 -7.1153 -3.8535 21 6 0.2964 -8.4345 -3.7313 22 6 -0.7569 -8.9202 -4.5711 23 7 -1.5922 -9.3070 -5.2360 24 6 0.8814 -9.2767 -2.7824 25 6 1.8947 -8.8037 -1.9767 26 6 2.3335 -7.4948 -2.1063 27 9 3.3272 -7.0366 -1.3140 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.0797 1.3445 -0.1083 32 1 1.5610 1.9274 -0.8309 33 1 2.9857 4.9183 0.7765 34 1 1.5611 -0.3871 -2.0628 35 1 3.0797 -0.6610 -1.1757 36 1 3.1653 -2.6770 0.2786 37 1 1.8160 -2.6058 -3.0857 38 1 3.2698 -3.0086 -2.1409 39 1 2.0000 -4.8410 -1.1732 40 1 1.8742 -4.8135 -4.1181 41 1 3.3283 -5.2165 -3.1739 42 1 0.2869 -6.4586 -4.5824 43 1 0.5399 -10.2962 -2.6801 44 1 2.3479 -9.4540 -1.2431 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905517339.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:31 Heat of formation + Delta-G solvation = -35.608729 kcal Electronic energy + Delta-G solvation = -25551.544280 eV Core-core repulsion = 21611.456844 eV Total energy + Delta-G solvation = -3940.087436 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.46826 -40.00811 -38.37134 -36.97531 -36.10899 -35.11826 -32.54461 -32.28232 -31.52554 -29.65235 -27.24304 -26.58000 -25.03640 -24.29409 -23.24683 -22.55613 -21.31011 -20.16237 -18.94697 -18.13014 -17.31584 -16.66145 -16.32033 -16.21620 -15.96733 -15.21269 -14.98257 -14.87460 -14.58982 -14.39308 -14.36246 -14.18847 -14.12877 -14.04905 -13.54478 -13.27380 -13.09296 -12.71763 -12.65911 -12.55729 -12.32398 -11.97126 -11.87282 -11.51598 -11.33295 -11.12513 -10.88427 -10.74138 -10.65258 -10.29043 -10.01336 -9.74726 -9.60121 -9.27984 -9.10483 -8.67054 -8.43489 -7.18959 -6.02487 -4.03251 0.06045 0.55735 2.18787 2.28926 3.18845 3.31599 3.31752 3.39056 3.44855 3.60303 3.85639 4.09714 4.15752 4.43062 4.44539 4.59700 4.64835 4.82510 4.94224 5.05832 5.16235 5.24652 5.27546 5.29491 5.34988 5.41119 5.48761 5.56507 5.61988 5.65166 5.73289 6.05897 6.11505 6.20699 6.32393 6.41197 6.67873 6.79378 6.99895 7.11792 7.27214 7.33270 7.81126 7.95958 8.10560 8.21099 8.56150 9.05316 9.61084 11.08535 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.026010 B = 0.001932 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.244191 B =14490.752053 C =14867.951461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.529 5.529 3 C 0.192 3.808 4 C -0.504 4.504 5 H 0.065 0.935 6 C 0.053 3.947 7 N -0.901 5.901 8 Si 0.898 3.102 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.025 3.975 13 C 0.113 3.887 14 H 0.104 0.896 15 O -0.546 6.546 16 C 0.027 3.973 17 N -0.680 5.680 18 C 0.096 3.904 19 C -0.113 4.113 20 C -0.024 4.024 21 C -0.041 4.041 22 C 0.256 3.744 23 N -0.413 5.413 24 C -0.042 4.042 25 C -0.153 4.153 26 C 0.137 3.863 27 F -0.128 7.128 28 H 0.009 0.991 29 H 0.048 0.952 30 H 0.073 0.927 31 H 0.028 0.972 32 H -0.011 1.011 33 H 0.260 0.740 34 H 0.029 0.971 35 H 0.068 0.932 36 H 0.368 0.632 37 H 0.081 0.919 38 H 0.035 0.965 39 H 0.351 0.649 40 H 0.089 0.911 41 H 0.047 0.953 42 H 0.145 0.855 43 H 0.143 0.857 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.889 -26.220 -9.615 27.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.253 5.253 3 C 0.067 3.933 4 C -0.542 4.542 5 H 0.083 0.917 6 C -0.148 4.148 7 N -0.541 5.541 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.212 1.212 12 C -0.105 4.105 13 C 0.053 3.947 14 H 0.122 0.878 15 O -0.349 6.349 16 C -0.102 4.102 17 N -0.312 5.312 18 C -0.033 4.033 19 C -0.114 4.114 20 C -0.045 4.045 21 C -0.044 4.044 22 C -0.060 4.060 23 N -0.087 5.087 24 C -0.063 4.063 25 C -0.172 4.172 26 C 0.116 3.884 27 F -0.106 7.106 28 H 0.028 0.972 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.046 0.954 32 H 0.007 0.993 33 H 0.070 0.930 34 H 0.047 0.953 35 H 0.087 0.913 36 H 0.214 0.786 37 H 0.099 0.901 38 H 0.054 0.946 39 H 0.170 0.830 40 H 0.108 0.892 41 H 0.065 0.935 42 H 0.163 0.837 43 H 0.161 0.839 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.359 -26.818 -10.370 28.785 hybrid contribution 1.608 1.314 0.464 2.128 sum 0.249 -25.504 -9.906 27.362 Atomic orbital electron populations 1.22241 0.88916 0.99302 1.00677 1.62026 1.06917 1.17371 1.39027 1.19756 0.95233 0.81652 0.96648 1.21215 1.34524 0.96821 1.01685 0.91718 1.25005 0.95361 0.97384 0.97045 1.69970 1.38638 1.11372 1.34079 0.86433 0.78139 0.79272 0.83540 1.19599 1.21033 1.21163 1.22696 1.00395 0.93825 0.93598 1.21986 0.99048 0.90929 0.82700 0.87827 1.86604 1.24918 1.84842 1.38566 1.22727 0.97878 0.88814 1.00818 1.60485 1.63271 1.02082 1.05393 1.20850 0.97676 0.88103 0.96698 1.19764 0.98053 0.96533 0.97054 1.20962 0.93119 0.93221 0.97223 1.15976 0.95824 0.94721 0.97915 1.25523 0.93119 0.93903 0.93455 1.81275 1.10295 1.07705 1.09475 1.21024 0.93547 0.99668 0.92048 1.21074 0.99345 0.94491 1.02274 1.17863 0.87343 0.92768 0.90390 1.91554 1.58220 1.89162 1.71672 0.97249 0.93375 0.90863 0.95420 0.99299 0.93033 0.95290 0.91320 0.78620 0.90083 0.94637 0.82986 0.89224 0.93474 0.83743 0.83906 0.83433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 9.16 60.06 0.55 1.29 16 2 N -0.53 -11.34 4.62 -244.36 -1.13 -12.47 16 3 C 0.19 5.00 4.72 -4.97 -0.02 4.98 16 4 C -0.50 -14.26 8.52 -34.44 -0.29 -14.55 16 5 H 0.06 1.83 7.10 -52.48 -0.37 1.46 16 6 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 7 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16 8 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 9 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 C 0.02 0.41 4.62 -3.82 -0.02 0.40 16 13 C 0.11 1.54 3.08 -26.73 -0.08 1.46 16 14 H 0.10 1.53 6.47 -51.93 -0.34 1.20 16 15 O -0.55 -7.99 12.72 -35.23 -0.45 -8.44 16 16 C 0.03 0.28 5.36 -3.83 -0.02 0.26 16 17 N -0.68 -6.49 6.49 -115.06 -0.75 -7.24 16 18 C 0.10 0.69 5.49 -4.98 -0.03 0.67 16 19 C -0.11 -0.75 5.42 -104.62 -0.57 -1.31 16 20 C -0.02 -0.14 9.37 -39.18 -0.37 -0.51 16 21 C -0.04 -0.23 5.73 -106.89 -0.61 -0.85 16 22 C 0.26 1.99 15.33 -22.49 -0.34 1.65 16 23 N -0.41 -4.30 18.53 41.82 0.78 -3.53 16 24 C -0.04 -0.18 9.75 -39.18 -0.38 -0.56 16 25 C -0.15 -0.73 10.01 -39.58 -0.40 -1.13 16 26 C 0.14 0.92 7.11 -39.28 -0.28 0.64 16 27 F -0.13 -1.04 16.33 2.25 0.04 -1.00 16 28 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 29 H 0.05 0.83 6.30 -51.93 -0.33 0.50 16 30 H 0.07 1.56 6.86 -51.93 -0.36 1.21 16 31 H 0.03 0.76 7.93 -51.93 -0.41 0.35 16 32 H -0.01 -0.30 8.12 -51.93 -0.42 -0.72 16 33 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 34 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 35 H 0.07 1.13 7.93 -51.93 -0.41 0.72 16 36 H 0.37 4.38 9.04 45.56 0.41 4.79 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.35 3.61 7.74 -39.29 -0.30 3.30 16 40 H 0.09 0.56 7.95 -51.93 -0.41 0.14 16 41 H 0.05 0.34 8.08 -51.93 -0.42 -0.08 16 42 H 0.14 0.66 8.00 -52.48 -0.42 0.24 16 43 H 0.14 0.32 8.06 -52.49 -0.42 -0.10 16 44 H 0.15 0.43 8.06 -52.48 -0.42 0.00 16 LS Contribution 380.47 15.07 5.73 5.73 Total: -1.00 -32.81 380.47 -8.48 -41.29 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -5.45 Total: 1.13 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: -2.96 Total: -6.17 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: -0.36 Total: -49.30 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: -0.45 Total: -8.44 kcal Atomic # 9 Polarization: -1.04 SS G_CDS: 0.04 Total: -1.00 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.81 -8.48 -41.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905517339.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.679 kcal (2) G-P(sol) polarization free energy of solvation -32.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds