Wall clock time and date at job start Fri Apr 10 2020 18:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46906 * 110.99728 * 2 1 4 4 C 1.50699 * 109.47140 * 66.04805 * 3 2 1 5 5 H 1.08003 * 119.99962 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99861 * 180.02562 * 4 3 2 7 7 N 1.31522 * 120.00244 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99980 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.46950 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47074 * 119.99839 * 8 6 4 11 11 H 1.48505 * 109.46997 * 239.99833 * 8 6 4 12 12 C 1.46905 * 110.99850 * 236.04849 * 2 1 3 13 13 C 1.53000 * 109.47114 * 293.94896 * 12 2 1 14 14 H 1.09000 * 109.46550 * 60.00064 * 13 12 2 15 15 O 1.42901 * 109.46928 * 300.00575 * 13 12 2 16 16 C 1.52996 * 109.47000 * 180.02562 * 13 12 2 17 17 N 1.46899 * 109.46798 * 185.00066 * 16 13 12 18 18 C 1.46901 * 111.00076 * 179.97438 * 17 16 13 19 19 C 1.50693 * 109.47360 * 180.02562 * 18 17 16 20 20 C 1.37871 * 119.94135 * 104.72757 * 19 18 17 21 21 C 1.39670 * 119.87623 * 179.75112 * 20 19 18 22 22 C 1.43199 * 120.12478 * 180.24995 * 21 20 19 23 23 N 8.85962 * 124.44196 * 188.73335 * 13 1 2 24 24 C 1.39711 * 119.75033 * 0.54214 * 21 20 19 25 25 C 1.37825 * 119.86968 * 359.71069 * 24 21 20 26 26 C 1.38622 * 119.93868 * 285.00122 * 19 18 17 27 27 F 1.35100 * 119.87452 * 359.97438 * 26 19 18 28 28 H 1.08996 * 109.47030 * 59.99921 * 1 2 3 29 29 H 1.08999 * 109.46702 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46890 * 299.99929 * 1 2 3 31 31 H 1.09004 * 109.47040 * 186.04743 * 3 2 1 32 32 H 1.09000 * 109.47033 * 306.04695 * 3 2 1 33 33 H 0.96992 * 120.00038 * 179.97438 * 7 6 4 34 34 H 1.08997 * 109.46807 * 53.95411 * 12 2 1 35 35 H 1.09000 * 109.46636 * 173.95277 * 12 2 1 36 36 H 0.96697 * 113.99735 * 299.99403 * 15 13 12 37 37 H 1.08995 * 109.47058 * 304.99907 * 16 13 12 38 38 H 1.08998 * 109.46953 * 65.00454 * 16 13 12 39 39 H 1.00896 * 111.00687 * 303.95477 * 17 16 13 40 40 H 1.09005 * 109.47140 * 300.00367 * 18 17 16 41 41 H 1.09001 * 109.46992 * 59.99753 * 18 17 16 42 42 H 1.08008 * 120.05903 * 0.02562 * 20 19 18 43 43 H 1.07999 * 120.06328 * 179.68643 * 24 21 20 44 44 H 1.08004 * 119.93352 * 180.02562 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0739 1.5115 2.0485 6 6 2.0267 3.3495 1.5284 7 7 2.7118 4.0020 0.6149 8 14 1.5829 4.1868 3.1382 9 1 0.8157 3.2441 3.9915 10 1 2.8249 4.5945 3.8430 11 1 0.7549 5.3877 2.8597 12 6 1.9954 -0.7660 -1.1377 13 6 1.6315 -2.2426 -0.9704 14 1 0.5472 -2.3474 -0.9323 15 8 2.2010 -2.7391 0.2426 16 6 2.1803 -3.0404 -2.1549 17 7 1.7299 -4.4352 -2.0566 18 6 2.2384 -5.2331 -3.1803 19 6 1.7564 -6.6545 -3.0458 20 6 0.7385 -7.1153 -3.8535 21 6 0.2964 -8.4345 -3.7313 22 6 -0.7569 -8.9202 -4.5711 23 7 -1.5922 -9.3070 -5.2360 24 6 0.8814 -9.2767 -2.7824 25 6 1.8947 -8.8037 -1.9767 26 6 2.3335 -7.4948 -2.1063 27 9 3.3272 -7.0366 -1.3140 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.0797 1.3445 -0.1083 32 1 1.5610 1.9274 -0.8309 33 1 2.9857 4.9183 0.7765 34 1 1.5611 -0.3871 -2.0628 35 1 3.0797 -0.6610 -1.1757 36 1 3.1653 -2.6770 0.2786 37 1 1.8160 -2.6058 -3.0857 38 1 3.2698 -3.0086 -2.1409 39 1 2.0000 -4.8410 -1.1732 40 1 1.8742 -4.8135 -4.1181 41 1 3.3283 -5.2165 -3.1739 42 1 0.2869 -6.4586 -4.5824 43 1 0.5399 -10.2962 -2.6801 44 1 2.3479 -9.4540 -1.2431 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905517339.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:30 Heat of formation + Delta-G solvation = -59.924317 kcal Electronic energy + Delta-G solvation = -25552.598683 eV Core-core repulsion = 21611.456844 eV Total energy + Delta-G solvation = -3941.141839 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.00243 -40.47669 -39.55754 -37.75082 -37.31240 -36.13948 -34.60816 -32.94073 -31.99999 -30.86155 -29.05354 -27.75981 -26.28533 -24.89216 -24.44959 -23.07334 -22.62146 -21.74066 -19.47789 -18.59679 -18.56610 -17.84447 -17.40433 -17.16395 -16.76474 -16.70238 -16.24452 -15.86048 -15.56790 -15.47523 -15.04596 -15.01503 -14.88671 -14.81416 -14.70013 -14.50477 -13.97202 -13.77024 -13.68826 -13.43094 -13.22013 -13.16834 -12.90823 -12.85970 -12.65302 -12.54717 -12.49856 -12.35396 -11.99983 -11.96577 -11.57917 -11.37542 -10.72620 -10.62024 -10.11341 -9.77439 -9.36863 -8.94246 -8.20577 -6.30145 -0.40979 0.15931 1.41064 1.41717 1.55731 1.58654 1.76152 2.40614 2.66666 2.78302 3.03787 3.12045 3.16541 3.46655 3.63499 3.72668 3.74556 4.01981 4.06306 4.11614 4.20767 4.29017 4.44838 4.48173 4.58085 4.61729 4.72061 4.75468 4.80373 4.84522 4.87769 5.03357 5.08260 5.15177 5.17420 5.18949 5.20157 5.33871 5.65780 5.69207 5.95119 6.06373 6.33593 6.35615 6.41532 6.65364 6.86453 6.98457 7.39645 8.90490 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.026010 B = 0.001932 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.244191 B =14490.752053 C =14867.951461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.540 5.540 3 C 0.207 3.793 4 C -0.522 4.522 5 H 0.060 0.940 6 C 0.000 4.000 7 N -0.935 5.935 8 Si 0.969 3.031 9 H -0.265 1.265 10 H -0.277 1.277 11 H -0.278 1.278 12 C 0.024 3.976 13 C 0.127 3.873 14 H 0.095 0.905 15 O -0.561 6.561 16 C 0.039 3.961 17 N -0.686 5.686 18 C 0.096 3.904 19 C -0.122 4.122 20 C -0.021 4.021 21 C -0.048 4.048 22 C 0.282 3.718 23 N -0.463 5.463 24 C -0.029 4.029 25 C -0.149 4.149 26 C 0.124 3.876 27 F -0.139 7.139 28 H 0.010 0.990 29 H 0.076 0.924 30 H 0.053 0.947 31 H 0.005 0.995 32 H -0.039 1.039 33 H 0.264 0.736 34 H 0.034 0.966 35 H 0.068 0.932 36 H 0.379 0.621 37 H 0.090 0.910 38 H 0.044 0.956 39 H 0.346 0.654 40 H 0.101 0.899 41 H 0.048 0.952 42 H 0.155 0.845 43 H 0.168 0.832 44 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.792 -27.676 -9.125 29.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.263 5.263 3 C 0.081 3.919 4 C -0.560 4.560 5 H 0.079 0.921 6 C -0.198 4.198 7 N -0.575 5.575 8 Si 0.794 3.206 9 H -0.189 1.189 10 H -0.203 1.203 11 H -0.204 1.204 12 C -0.105 4.105 13 C 0.067 3.933 14 H 0.113 0.887 15 O -0.367 6.367 16 C -0.091 4.091 17 N -0.318 5.318 18 C -0.032 4.032 19 C -0.124 4.124 20 C -0.042 4.042 21 C -0.052 4.052 22 C -0.033 4.033 23 N -0.139 5.139 24 C -0.050 4.050 25 C -0.168 4.168 26 C 0.104 3.896 27 F -0.118 7.118 28 H 0.028 0.972 29 H 0.095 0.905 30 H 0.072 0.928 31 H 0.023 0.977 32 H -0.021 1.021 33 H 0.073 0.927 34 H 0.052 0.948 35 H 0.087 0.913 36 H 0.227 0.773 37 H 0.108 0.892 38 H 0.062 0.938 39 H 0.165 0.835 40 H 0.119 0.881 41 H 0.066 0.934 42 H 0.172 0.828 43 H 0.185 0.815 44 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -1.454 -28.299 -9.893 30.014 hybrid contribution 1.679 1.705 0.293 2.411 sum 0.226 -26.594 -9.600 28.275 Atomic orbital electron populations 1.22206 0.87927 1.00829 0.99709 1.61932 1.07910 1.14817 1.41691 1.19407 0.93683 0.83974 0.94854 1.21508 1.34638 0.97459 1.02425 0.92138 1.25915 0.95081 0.98076 1.00716 1.70084 1.39483 1.11855 1.36106 0.85332 0.78091 0.78147 0.79033 1.18896 1.20304 1.20392 1.22824 1.00271 0.95342 0.92110 1.21804 0.98635 0.89013 0.83854 0.88709 1.86566 1.26099 1.84741 1.39260 1.22526 0.98228 0.89043 0.99330 1.60472 1.63603 1.01775 1.05908 1.20884 0.97782 0.88317 0.96210 1.19708 0.98674 0.96263 0.97706 1.21047 0.92674 0.93383 0.97108 1.16021 0.95733 0.95062 0.98344 1.25720 0.92478 0.92574 0.92493 1.81302 1.12016 1.09399 1.11197 1.21291 0.92521 1.00475 0.90668 1.21302 0.99072 0.93930 1.02460 1.18143 0.87355 0.93664 0.90463 1.91526 1.58784 1.89409 1.72045 0.97186 0.90501 0.92850 0.97685 1.02141 0.92697 0.94795 0.91317 0.77326 0.89194 0.93755 0.83536 0.88064 0.93384 0.82773 0.81482 0.81382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.64 9.16 127.69 1.17 2.81 16 2 N -0.54 -23.26 4.62 -927.03 -4.28 -27.54 16 3 C 0.21 11.09 4.72 85.56 0.40 11.50 16 4 C -0.52 -30.02 8.52 25.60 0.22 -29.80 16 5 H 0.06 3.46 7.10 -2.91 -0.02 3.44 16 6 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 7 N -0.93 -56.37 13.29 21.45 0.28 -56.09 16 8 Si 0.97 44.72 29.54 68.60 2.03 46.75 16 9 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 12 C 0.02 0.78 4.62 86.30 0.40 1.18 16 13 C 0.13 3.29 3.08 30.59 0.09 3.39 16 14 H 0.10 2.65 6.47 -2.39 -0.02 2.64 16 15 O -0.56 -15.79 12.72 -148.98 -1.90 -17.68 16 16 C 0.04 0.73 5.36 86.30 0.46 1.19 16 17 N -0.69 -11.93 6.49 -517.95 -3.36 -15.29 16 18 C 0.10 1.23 5.49 85.55 0.47 1.70 16 19 C -0.12 -1.41 5.42 -19.86 -0.11 -1.52 16 20 C -0.02 -0.20 9.37 22.53 0.21 0.01 16 21 C -0.05 -0.46 5.73 -21.33 -0.12 -0.58 16 22 C 0.28 4.04 15.33 88.34 1.35 5.39 16 23 N -0.46 -9.43 18.53 19.00 0.35 -9.08 16 24 C -0.03 -0.17 9.75 22.53 0.22 0.05 16 25 C -0.15 -1.05 10.01 22.27 0.22 -0.83 16 26 C 0.12 1.45 7.11 22.46 0.16 1.61 16 27 F -0.14 -2.09 16.33 44.97 0.73 -1.36 16 28 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.08 2.57 6.30 -2.39 -0.02 2.55 16 30 H 0.05 2.29 6.86 -2.39 -0.02 2.27 16 31 H 0.01 0.29 7.93 -2.38 -0.02 0.27 16 32 H -0.04 -2.27 8.12 -2.39 -0.02 -2.28 16 33 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 34 H 0.03 1.10 8.12 -2.39 -0.02 1.08 16 35 H 0.07 2.25 7.93 -2.39 -0.02 2.23 16 36 H 0.38 8.64 9.04 -74.06 -0.67 7.97 16 37 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.35 6.62 7.74 -89.70 -0.69 5.93 16 40 H 0.10 1.04 7.95 -2.38 -0.02 1.02 16 41 H 0.05 0.61 8.08 -2.39 -0.02 0.59 16 42 H 0.15 1.13 8.00 -2.91 -0.02 1.10 16 43 H 0.17 0.18 8.06 -2.91 -0.02 0.16 16 44 H 0.17 0.47 8.06 -2.91 -0.02 0.44 16 Total: -1.00 -71.28 380.47 -0.85 -72.13 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -0.32 Total: 11.61 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: 5.62 Total: -3.45 kcal Atomic # 7 Polarization: -100.99 SS G_CDS: -7.01 Total: -107.99 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -1.90 Total: -17.68 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.73 Total: -1.36 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -71.28 -0.85 -72.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905517339.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.203 kcal (2) G-P(sol) polarization free energy of solvation -71.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds