Wall clock time and date at job start Fri Apr 10 2020 18:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 N 1.28717 * 126.03908 * 2 1 4 4 N 1.28509 * 110.64086 * 179.97438 * 3 2 1 5 5 C 1.33319 * 109.44085 * 0.02562 * 4 3 2 6 6 C 1.37006 * 106.37147 * 359.97438 * 5 4 3 7 7 C 1.47227 * 127.18735 * 180.02562 * 6 5 4 8 8 O 1.21623 * 120.00059 * 186.07825 * 7 6 5 9 9 N 1.34776 * 120.00259 * 6.07254 * 7 6 5 10 10 C 1.47482 * 125.66070 * 5.09254 * 9 7 6 11 11 C 1.55245 * 104.79457 * 155.93593 * 10 9 7 12 12 C 1.54494 * 101.43970 * 36.64679 * 11 10 9 13 13 C 1.47180 * 125.66351 * 185.40104 * 9 7 6 14 14 C 1.52517 * 110.10259 * 206.81000 * 12 11 10 15 15 N 1.47304 * 108.40210 * 186.95536 * 14 12 11 16 16 C 1.36930 * 121.06766 * 229.41971 * 15 14 12 17 17 H 1.08004 * 120.00112 * 150.74866 * 16 15 14 18 18 C 1.38808 * 120.00022 * 330.74462 * 16 15 14 19 19 N 1.31617 * 120.00176 * 350.07272 * 18 16 15 20 20 Si 1.86810 * 120.00169 * 170.07264 * 18 16 15 21 21 H 1.48494 * 109.47324 * 89.99799 * 20 18 16 22 22 H 1.48497 * 109.47114 * 210.00334 * 20 18 16 23 23 H 1.48506 * 109.46607 * 329.99892 * 20 18 16 24 24 C 1.47170 * 117.86354 * 49.39563 * 15 14 12 25 25 C 1.53278 * 108.54985 * 308.87043 * 24 15 14 26 26 O 1.42069 * 110.38571 * 83.76857 * 12 11 10 27 27 H 1.09000 * 109.47490 * 273.72789 * 1 2 3 28 28 H 1.09000 * 109.47409 * 33.73177 * 1 2 3 29 29 H 1.09001 * 109.47247 * 153.73226 * 1 2 3 30 30 H 1.08002 * 126.81110 * 180.26045 * 5 4 3 31 31 H 1.09006 * 110.35553 * 274.88378 * 10 9 7 32 32 H 1.08996 * 110.35899 * 37.16942 * 10 9 7 33 33 H 1.08997 * 111.20148 * 278.55611 * 11 10 9 34 34 H 1.08999 * 110.91653 * 154.61086 * 11 10 9 35 35 H 1.08995 * 109.91022 * 300.84167 * 13 9 7 36 36 H 1.08991 * 109.91068 * 62.11131 * 13 9 7 37 37 H 1.09006 * 109.67567 * 306.68658 * 14 12 11 38 38 H 1.09007 * 109.68028 * 67.18841 * 14 12 11 39 39 H 0.97002 * 120.00255 * 179.97438 * 19 18 16 40 40 H 1.08998 * 109.62408 * 68.59143 * 24 15 14 41 41 H 1.09002 * 109.62258 * 189.15218 * 24 15 14 42 42 H 1.09001 * 109.50963 * 172.81972 * 25 24 15 43 43 H 1.09003 * 109.51508 * 292.96738 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2222 1.0408 0.0000 4 7 3.4612 0.6996 0.0005 5 6 3.5552 -0.6303 0.0004 6 6 2.2711 -1.1082 0.0003 7 6 1.8463 -2.5178 0.0006 8 8 0.6680 -2.7978 -0.1111 9 7 2.7630 -3.4979 0.1245 10 6 4.2035 -3.3016 0.3724 11 6 4.6762 -4.6250 1.0321 12 6 3.8267 -5.6672 0.2713 13 6 2.4938 -4.9417 0.0286 14 6 3.6122 -6.9029 1.1391 15 7 2.9470 -7.9338 0.3239 16 6 1.8346 -8.5879 0.7820 17 1 1.0990 -8.9573 0.0827 18 6 1.6523 -8.7763 2.1451 19 7 2.6301 -8.5053 2.9835 20 14 0.0192 -9.4143 2.7897 21 1 0.0530 -10.8980 2.8412 22 1 -0.2187 -8.8769 4.1535 23 1 -1.0750 -8.9751 1.8868 24 6 3.5159 -8.2379 -0.9989 25 6 3.6980 -6.9230 -1.7653 26 8 4.4479 -6.0081 -0.9601 27 1 -0.3634 0.0668 1.0255 28 1 -0.3634 0.8546 -0.5707 29 1 -0.3634 -0.9215 -0.4548 30 1 4.4633 -1.2148 0.0046 31 1 4.7305 -3.1342 -0.5670 32 1 4.3607 -2.4631 1.0508 33 1 4.4480 -4.6376 2.0979 34 1 5.7402 -4.7872 0.8599 35 1 1.7681 -5.2352 0.7870 36 1 2.1151 -5.1835 -0.9644 37 1 4.5743 -7.2766 1.4899 38 1 2.9844 -6.6475 1.9928 39 1 2.5026 -8.6366 3.9361 40 1 4.4820 -8.7279 -0.8780 41 1 2.8374 -8.8907 -1.5480 42 1 4.2347 -7.1146 -2.6944 43 1 2.7214 -6.4942 -1.9899 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972364800.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:35 Heat of formation + Delta-G solvation = 72.878323 kcal Electronic energy + Delta-G solvation = -28416.002558 eV Core-core repulsion = 24500.539435 eV Total energy + Delta-G solvation = -3915.463123 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.46728 -40.33150 -38.71748 -36.44616 -34.75510 -34.53110 -32.43412 -31.40446 -31.07695 -29.24436 -28.28550 -27.67477 -26.07820 -24.35922 -23.37367 -22.73737 -22.44447 -21.14225 -19.98560 -18.85713 -17.61443 -17.15124 -17.03361 -16.90317 -16.35930 -15.66086 -15.25084 -14.96653 -14.61676 -14.43089 -14.30045 -13.76149 -13.54077 -13.52454 -13.24837 -13.14428 -12.99500 -12.82281 -12.30386 -12.06607 -11.93830 -11.49407 -11.29480 -11.17893 -11.06204 -10.91537 -10.80614 -10.54228 -10.40327 -10.33301 -10.13122 -10.03929 -9.67105 -9.63680 -9.13781 -8.68657 -8.60276 -6.78388 -5.91452 -3.39137 0.78036 1.88927 2.13957 2.89324 2.97275 3.30553 3.37949 3.39568 4.01530 4.15629 4.23849 4.37645 4.54927 4.65747 4.72473 4.82765 4.87344 5.12449 5.19664 5.27044 5.30589 5.37437 5.43733 5.53170 5.71218 5.72546 5.76489 5.92452 6.00429 6.06395 6.08928 6.17292 6.18011 6.32292 6.40296 6.53565 6.71330 6.97837 7.34063 7.39909 7.65465 7.79437 7.89824 8.16719 8.27487 9.04758 9.65659 10.23553 11.16749 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.015955 B = 0.003972 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.507739 B = 7047.275724 C = 7944.191906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.256 5.256 3 N -0.064 5.064 4 N -0.275 5.275 5 C -0.011 4.011 6 C -0.060 4.060 7 C 0.604 3.396 8 O -0.538 6.538 9 N -0.594 5.594 10 C 0.086 3.914 11 C -0.116 4.116 12 C 0.084 3.916 13 C 0.100 3.900 14 C 0.164 3.836 15 N -0.596 5.596 16 C -0.254 4.254 17 H 0.068 0.932 18 C 0.007 3.993 19 N -0.906 5.906 20 Si 0.904 3.096 21 H -0.285 1.285 22 H -0.289 1.289 23 H -0.278 1.278 24 C 0.109 3.891 25 C 0.043 3.957 26 O -0.375 6.375 27 H 0.095 0.905 28 H 0.101 0.899 29 H 0.121 0.879 30 H 0.207 0.793 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.035 0.965 38 H 0.099 0.901 39 H 0.256 0.744 40 H 0.028 0.972 41 H 0.063 0.937 42 H 0.085 0.915 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.851 12.566 -5.715 13.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.053 5.053 3 N -0.045 5.045 4 N -0.138 5.138 5 C -0.171 4.171 6 C -0.194 4.194 7 C 0.390 3.610 8 O -0.416 6.416 9 N -0.326 5.326 10 C -0.037 4.037 11 C -0.154 4.154 12 C 0.042 3.958 13 C -0.021 4.021 14 C 0.037 3.963 15 N -0.319 5.319 16 C -0.383 4.383 17 H 0.086 0.914 18 C -0.192 4.192 19 N -0.551 5.551 20 Si 0.734 3.266 21 H -0.212 1.212 22 H -0.215 1.215 23 H -0.203 1.203 24 C -0.017 4.017 25 C -0.035 4.035 26 O -0.294 6.294 27 H 0.113 0.887 28 H 0.120 0.880 29 H 0.139 0.861 30 H 0.224 0.776 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.108 0.892 36 H 0.093 0.907 37 H 0.053 0.947 38 H 0.117 0.883 39 H 0.066 0.934 40 H 0.046 0.954 41 H 0.081 0.919 42 H 0.103 0.897 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.302 14.041 -5.651 15.192 hybrid contribution -1.195 -1.651 0.431 2.083 sum 0.107 12.390 -5.220 13.445 Atomic orbital electron populations 1.22619 0.71386 1.07153 1.05642 1.47623 1.09891 1.03395 1.44376 1.78240 0.96819 1.11588 1.17872 1.74899 1.09123 1.12669 1.17105 1.24485 0.97330 0.91857 1.03410 1.21935 0.91521 0.90819 1.15145 1.16223 0.84914 0.81959 0.77927 1.90795 1.16199 1.83218 1.51379 1.48229 1.08397 1.06935 1.69083 1.22910 0.80568 0.99477 1.00705 1.22774 1.01139 0.91613 0.99916 1.22746 0.89912 0.96490 0.86614 1.22657 0.99600 0.76451 1.03409 1.21275 0.97846 0.84384 0.92745 1.44079 1.31258 1.41720 1.14887 1.19168 0.96608 1.31762 0.90807 0.91448 1.25121 0.97658 0.99543 0.96882 1.69928 1.30469 1.52267 1.02398 0.86261 0.83372 0.78746 0.78232 1.21224 1.21464 1.20339 1.21601 0.97476 0.94161 0.88453 1.23125 0.95650 0.91306 0.93395 1.87674 1.46622 1.64096 1.30965 0.88659 0.88035 0.86112 0.77635 0.90104 0.89835 0.88686 0.88582 0.89218 0.90732 0.94679 0.88270 0.93397 0.95407 0.91852 0.89716 0.93520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.66 11.08 59.84 0.66 1.32 16 2 N -0.26 -3.24 3.79 -64.13 -0.24 -3.49 16 3 N -0.06 -0.89 13.14 60.35 0.79 -0.09 16 4 N -0.28 -3.84 12.35 30.47 0.38 -3.46 16 5 C -0.01 -0.13 10.36 -17.35 -0.18 -0.31 16 6 C -0.06 -0.81 6.92 -82.33 -0.57 -1.38 16 7 C 0.60 9.27 7.83 -12.61 -0.10 9.18 16 8 O -0.54 -9.57 15.10 5.26 0.08 -9.49 16 9 N -0.59 -8.80 3.33 -171.88 -0.57 -9.38 16 10 C 0.09 0.99 5.16 -2.32 -0.01 0.98 16 11 C -0.12 -1.54 6.22 -24.76 -0.15 -1.70 16 12 C 0.08 1.45 0.81 -89.73 -0.07 1.38 16 13 C 0.10 1.75 5.96 -3.32 -0.02 1.73 16 14 C 0.16 3.55 3.93 -3.85 -0.02 3.53 16 15 N -0.60 -13.91 2.96 -172.17 -0.51 -14.42 16 16 C -0.25 -6.58 9.66 -15.06 -0.15 -6.72 16 17 H 0.07 1.72 7.85 -52.48 -0.41 1.31 16 18 C 0.01 0.18 5.10 -17.43 -0.09 0.09 16 19 N -0.91 -24.74 10.97 55.49 0.61 -24.13 16 20 Si 0.90 20.96 29.57 -169.99 -5.03 15.93 16 21 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 24 C 0.11 2.14 6.72 -3.53 -0.02 2.12 16 25 C 0.04 0.71 6.76 37.30 0.25 0.97 16 26 O -0.37 -6.46 10.26 -35.23 -0.36 -6.82 16 27 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.12 1.23 6.16 -51.93 -0.32 0.91 16 30 H 0.21 1.88 4.92 -52.49 -0.26 1.62 16 31 H 0.08 0.83 7.83 -51.93 -0.41 0.43 16 32 H 0.08 0.78 5.86 -51.93 -0.30 0.47 16 33 H 0.09 1.26 8.01 -51.93 -0.42 0.84 16 34 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.09 1.81 7.61 -51.93 -0.40 1.42 16 36 H 0.07 1.37 6.00 -51.93 -0.31 1.06 16 37 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.10 2.40 5.95 -51.93 -0.31 2.09 16 39 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 40 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 1.19 7.96 -51.93 -0.41 0.77 16 42 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 43 H 0.05 0.79 6.22 -51.93 -0.32 0.46 16 LS Contribution 340.81 15.07 5.14 5.14 Total: -1.00 -31.50 340.81 -5.72 -37.22 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -5.54 Total: 1.82 kcal Atomic # 6 Polarization: 11.64 SS G_CDS: -0.46 Total: 11.18 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: 0.45 Total: -54.97 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -0.28 Total: -16.32 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.03 Total: 15.93 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.50 -5.72 -37.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972364800.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.101 kcal (2) G-P(sol) polarization free energy of solvation -31.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds