Wall clock time and date at job start Fri Apr 10 2020 18:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34579 * 125.74664 * 2 1 4 4 N 1.30866 * 107.62557 * 179.97438 * 3 2 1 5 5 C 1.34552 * 107.27008 * 0.02562 * 4 3 2 6 6 C 1.47870 * 126.04928 * 179.97438 * 5 4 3 7 7 O 1.21554 * 119.99923 * 180.02562 * 6 5 4 8 8 N 1.34775 * 119.99767 * 0.02562 * 6 5 4 9 9 C 1.47080 * 125.63080 * 359.95843 * 8 6 5 10 10 C 1.54468 * 107.30113 * 181.03999 * 9 8 6 11 11 C 1.54359 * 102.86849 * 21.47635 * 10 9 8 12 12 C 1.47572 * 125.62637 * 179.97438 * 8 6 5 13 13 C 1.51946 * 110.49398 * 207.76326 * 11 10 9 14 14 N 1.47329 * 108.61960 * 186.50543 * 13 11 10 15 15 C 1.36937 * 121.07685 * 229.15871 * 14 13 11 16 16 H 1.08000 * 119.99934 * 28.13919 * 15 14 13 17 17 C 1.38812 * 120.00619 * 208.14171 * 15 14 13 18 18 N 1.31612 * 120.00547 * 198.88748 * 17 15 14 19 19 Si 1.86806 * 119.99498 * 18.88631 * 17 15 14 20 20 H 1.48501 * 109.46850 * 273.15854 * 19 17 15 21 21 H 1.48502 * 109.47219 * 33.15664 * 19 17 15 22 22 H 1.48494 * 109.47070 * 153.15927 * 19 17 15 23 23 C 1.47160 * 117.85322 * 48.88183 * 14 13 11 24 24 C 1.53282 * 108.56391 * 309.03619 * 23 14 13 25 25 O 1.41883 * 110.75927 * 83.67939 * 11 10 9 26 26 N 1.28851 * 125.74649 * 180.31315 * 2 1 3 27 27 H 1.09009 * 109.46689 * 90.00077 * 1 2 3 28 28 H 1.09000 * 109.47367 * 209.99718 * 1 2 3 29 29 H 1.08995 * 109.47774 * 330.00192 * 1 2 3 30 30 H 1.08005 * 126.18905 * 0.02562 * 3 2 1 31 31 H 1.09003 * 109.87632 * 300.46641 * 9 8 6 32 32 H 1.09001 * 109.88198 * 61.61489 * 9 8 6 33 33 H 1.09002 * 110.73096 * 263.13444 * 10 9 8 34 34 H 1.08998 * 110.73542 * 139.82161 * 10 9 8 35 35 H 1.09008 * 110.37343 * 37.82696 * 12 8 6 36 36 H 1.08993 * 110.47566 * 275.52526 * 12 8 6 37 37 H 1.08999 * 109.62354 * 66.67583 * 13 11 10 38 38 H 1.09000 * 109.52072 * 306.26960 * 13 11 10 39 39 H 0.96997 * 120.00216 * 180.02562 * 18 17 15 40 40 H 1.09003 * 109.61926 * 68.75557 * 23 14 13 41 41 H 1.09002 * 109.62262 * 189.30706 * 23 14 13 42 42 H 1.08998 * 109.50899 * 172.90270 * 24 23 14 43 43 H 1.08998 * 109.50783 * 293.04376 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2512 1.0923 0.0000 4 7 3.4950 0.6852 0.0006 5 6 3.4750 -0.6602 0.0003 6 6 4.6575 -1.5480 0.0002 7 8 4.5114 -2.7547 -0.0004 8 7 5.8972 -1.0192 0.0009 9 6 6.2162 0.4166 0.0009 10 6 7.7553 0.5452 -0.0249 11 6 8.2049 -0.8196 -0.5888 12 6 7.1585 -1.7852 0.0015 13 6 9.5940 -1.1723 -0.0841 14 7 10.0452 -2.3977 -0.7661 15 6 10.5632 -3.4501 -0.0595 16 1 10.2562 -3.6177 0.9623 17 6 11.4829 -4.3015 -0.6563 18 7 11.7017 -5.4952 -0.1470 19 14 12.4099 -3.7529 -2.1825 20 1 11.6059 -4.0692 -3.3903 21 1 12.6493 -2.2888 -2.1167 22 1 13.7112 -4.4646 -2.2538 23 6 9.9156 -2.4568 -2.2308 24 6 8.4799 -2.0761 -2.6095 25 8 8.1506 -0.8204 -2.0066 26 7 2.2178 -1.0458 -0.0057 27 1 -0.3633 0.0000 -1.0278 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5138 30 1 1.9163 2.1191 0.0004 31 1 5.7898 0.8910 -0.8830 32 1 5.8204 0.8843 0.9024 33 1 8.1470 0.6949 0.9812 34 1 8.0638 1.3559 -0.6849 35 1 7.0642 -2.6720 -0.6254 36 1 7.4328 -2.0673 1.0179 37 1 9.5602 -1.3423 0.9920 38 1 10.2803 -0.3550 -0.3056 39 1 12.3446 -6.0899 -0.5639 40 1 10.6131 -1.7553 -2.6886 41 1 10.1296 -3.4681 -2.5767 42 1 8.3994 -1.9920 -3.6932 43 1 7.7934 -2.8432 -2.2512 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972369727.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:39 Heat of formation + Delta-G solvation = 42.775664 kcal Electronic energy + Delta-G solvation = -28032.618019 eV Core-core repulsion = 24115.849547 eV Total energy + Delta-G solvation = -3916.768472 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.44831 -41.68893 -40.06945 -37.74911 -36.35316 -35.53438 -33.74628 -33.24614 -32.79235 -30.58667 -29.91037 -28.85238 -27.46074 -25.46523 -24.95821 -24.03706 -23.03356 -22.77065 -20.98984 -20.55624 -19.06486 -18.76367 -17.92456 -17.70734 -17.59648 -17.40967 -16.76038 -16.50997 -15.96782 -15.87723 -15.70888 -15.57545 -15.33617 -14.74591 -14.44377 -14.05569 -14.01863 -13.93884 -13.87552 -13.53201 -13.47961 -13.15633 -12.87717 -12.65617 -12.46838 -12.33628 -12.10941 -12.06497 -11.62661 -11.55223 -11.43132 -11.40975 -11.28919 -11.06715 -10.60297 -10.51001 -9.74616 -8.93958 -8.18323 -5.54404 0.25453 1.13627 1.23010 1.29034 1.40511 1.50208 1.88443 2.17903 2.40024 2.63304 2.91889 3.02718 3.21017 3.40833 3.54055 3.64244 3.88466 3.90867 4.09945 4.14997 4.32045 4.34241 4.39841 4.41865 4.47001 4.57842 4.63081 4.69660 4.73150 4.77850 4.79691 4.87392 4.93202 4.96709 5.09032 5.20332 5.24739 5.32548 5.68770 5.79858 6.09592 6.20346 6.29525 6.75966 6.81716 7.07056 7.53830 7.95144 9.01319 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.028025 B = 0.003197 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.879967 B = 8756.935936 C = 9095.942584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.300 5.300 3 C 0.208 3.792 4 N -0.497 5.497 5 C 0.125 3.875 6 C 0.614 3.386 7 O -0.576 6.576 8 N -0.592 5.592 9 C 0.123 3.877 10 C -0.106 4.106 11 C 0.095 3.905 12 C 0.097 3.903 13 C 0.131 3.869 14 N -0.623 5.623 15 C -0.247 4.247 16 H 0.054 0.946 17 C -0.035 4.035 18 N -0.958 5.958 19 Si 0.950 3.050 20 H -0.270 1.270 21 H -0.261 1.261 22 H -0.311 1.311 23 C 0.085 3.915 24 C 0.052 3.948 25 O -0.364 6.364 26 N -0.289 5.289 27 H 0.106 0.894 28 H 0.093 0.907 29 H 0.147 0.853 30 H 0.286 0.714 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.052 0.948 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.057 0.943 39 H 0.262 0.738 40 H 0.046 0.954 41 H 0.063 0.937 42 H 0.120 0.880 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.652 22.938 -1.306 32.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.095 5.095 3 C -0.087 4.087 4 N -0.224 5.224 5 C -0.154 4.154 6 C 0.400 3.600 7 O -0.453 6.453 8 N -0.324 5.324 9 C 0.001 3.999 10 C -0.144 4.144 11 C 0.053 3.947 12 C -0.025 4.025 13 C 0.006 3.994 14 N -0.348 5.348 15 C -0.377 4.377 16 H 0.072 0.928 17 C -0.230 4.230 18 N -0.603 5.603 19 Si 0.779 3.221 20 H -0.196 1.196 21 H -0.185 1.185 22 H -0.239 1.239 23 C -0.040 4.040 24 C -0.026 4.026 25 O -0.282 6.282 26 N -0.131 5.131 27 H 0.124 0.876 28 H 0.112 0.888 29 H 0.166 0.834 30 H 0.301 0.699 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.081 0.919 42 H 0.138 0.862 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -22.685 21.839 -1.403 31.521 hybrid contribution 0.597 -1.116 -0.414 1.332 sum -22.088 20.723 -1.817 30.342 Atomic orbital electron populations 1.22772 0.69051 1.07922 1.06665 1.47835 1.10928 1.02981 1.47804 1.27634 0.84484 0.97615 0.98929 1.71312 1.22608 1.07573 1.20859 1.23057 0.91230 0.90410 1.10665 1.16373 0.81256 0.85419 0.76976 1.90800 1.85949 1.15868 1.52728 1.48237 1.03645 1.10136 1.70418 1.22240 0.95354 0.78471 1.03797 1.22744 0.93547 0.94618 1.03483 1.22336 0.93784 0.96628 0.81960 1.22648 0.82968 0.95664 1.01268 1.21481 0.92349 0.88253 0.97339 1.44501 1.73497 1.14832 1.02014 1.18788 1.18124 1.02995 0.97761 0.92838 1.25944 0.99091 0.96061 1.01856 1.69956 1.37870 1.07931 1.44591 0.85907 0.77355 0.78622 0.80251 1.19593 1.18542 1.23943 1.22120 0.96617 1.00263 0.84984 1.23059 0.94842 0.85875 0.98818 1.87679 1.89562 1.32615 1.18379 1.74270 1.03127 1.15971 1.19707 0.87568 0.88835 0.83447 0.69922 0.90120 0.89008 0.86639 0.86611 0.92959 0.90866 0.90513 0.92466 0.92878 0.93588 0.91902 0.86218 0.94639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.18 11.38 127.77 1.45 1.64 16 2 N -0.30 -4.46 3.72 -373.46 -1.39 -5.85 16 3 C 0.21 2.42 12.62 180.30 2.27 4.69 16 4 N -0.50 -10.95 8.86 -193.03 -1.71 -12.66 16 5 C 0.12 3.84 7.80 137.13 1.07 4.91 16 6 C 0.61 23.52 7.86 86.79 0.68 24.20 16 7 O -0.58 -27.17 17.35 -3.89 -0.07 -27.24 16 8 N -0.59 -20.06 3.33 -815.87 -2.72 -22.78 16 9 C 0.12 2.99 5.53 86.77 0.48 3.47 16 10 C -0.11 -2.39 6.12 31.55 0.19 -2.19 16 11 C 0.10 3.12 0.83 -10.30 -0.01 3.11 16 12 C 0.10 3.67 5.84 86.56 0.51 4.17 16 13 C 0.13 4.90 5.37 85.87 0.46 5.36 16 14 N -0.62 -29.51 2.75 -699.66 -1.92 -31.43 16 15 C -0.25 -14.16 10.10 84.03 0.85 -13.32 16 16 H 0.05 3.35 8.06 -2.91 -0.02 3.33 16 17 C -0.03 -2.05 5.26 84.86 0.45 -1.61 16 18 N -0.96 -61.34 13.97 21.65 0.30 -61.04 16 19 Si 0.95 46.90 24.31 68.60 1.67 48.57 16 20 H -0.27 -12.45 6.39 99.48 0.64 -11.82 16 21 H -0.26 -12.28 6.86 99.48 0.68 -11.59 16 22 H -0.31 -15.61 7.11 99.48 0.71 -14.90 16 23 C 0.09 3.68 4.37 86.35 0.38 4.06 16 24 C 0.05 1.93 6.78 72.08 0.49 2.42 16 25 O -0.36 -12.75 10.28 -148.95 -1.53 -14.28 16 26 N -0.29 -8.10 12.08 -52.43 -0.63 -8.73 16 27 H 0.11 -0.01 8.14 -2.38 -0.02 -0.03 16 28 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.15 -0.95 8.14 -2.39 -0.02 -0.97 16 30 H 0.29 -0.64 8.06 -2.91 -0.02 -0.66 16 31 H 0.08 1.95 7.63 -2.39 -0.02 1.93 16 32 H 0.09 1.95 7.74 -2.39 -0.02 1.93 16 33 H 0.12 2.09 8.00 -2.39 -0.02 2.07 16 34 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.05 2.36 6.00 -2.38 -0.01 2.35 16 36 H 0.07 2.84 7.80 -2.39 -0.02 2.82 16 37 H 0.08 2.82 7.69 -2.39 -0.02 2.81 16 38 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.26 15.97 8.31 -92.71 -0.77 15.19 16 40 H 0.05 1.90 7.06 -2.39 -0.02 1.88 16 41 H 0.06 2.97 4.63 -2.39 -0.01 2.96 16 42 H 0.12 3.67 8.14 -2.39 -0.02 3.65 16 43 H 0.04 1.47 6.25 -2.39 -0.01 1.45 16 Total: -1.00 -89.88 342.97 2.21 -87.66 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: 0.94 Total: 6.87 kcal Atomic # 6 Polarization: 31.65 SS G_CDS: 9.27 Total: 40.92 kcal Atomic # 7 Polarization: -134.43 SS G_CDS: -8.07 Total: -142.50 kcal Atomic # 8 Polarization: -39.91 SS G_CDS: -1.60 Total: -41.51 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 1.67 Total: 48.57 kcal Total: -89.88 2.21 -87.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972369727.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.441 kcal (2) G-P(sol) polarization free energy of solvation -89.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds