Wall clock time and date at job start Fri Apr 10 2020 18:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34577 * 125.74696 * 2 1 4 4 N 1.30877 * 107.62588 * 179.86552 * 3 2 1 5 5 C 1.34551 * 107.26565 * 0.38803 * 4 3 2 6 6 C 1.47873 * 126.04814 * 179.79301 * 5 4 3 7 7 O 1.21554 * 120.00082 * 179.97438 * 6 5 4 8 8 N 1.34781 * 119.99702 * 359.95523 * 6 5 4 9 9 C 1.47482 * 125.66390 * 0.02562 * 8 6 5 10 10 C 1.55020 * 104.90135 * 204.02620 * 9 8 6 11 11 C 1.54509 * 101.51949 * 323.62531 * 10 9 8 12 12 C 1.47185 * 125.65873 * 179.72261 * 8 6 5 13 13 C 1.52524 * 110.05858 * 153.09965 * 11 10 9 14 14 N 1.47299 * 108.38058 * 72.02576 * 13 11 10 15 15 C 1.36944 * 121.05720 * 229.39718 * 14 13 11 16 16 H 1.07997 * 120.00257 * 153.85520 * 15 14 13 17 17 C 1.38816 * 119.99679 * 333.85121 * 15 14 13 18 18 N 1.31622 * 119.99918 * 343.62701 * 17 15 14 19 19 Si 1.86795 * 119.99692 * 163.63121 * 17 15 14 20 20 H 1.48498 * 109.47346 * 59.99896 * 19 17 15 21 21 H 1.48504 * 109.46827 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47021 * 299.99905 * 19 17 15 23 23 C 1.47160 * 117.88470 * 49.41715 * 14 13 11 24 24 C 1.53285 * 108.54114 * 308.88424 * 23 14 13 25 25 O 1.42065 * 110.33870 * 276.04941 * 11 10 9 26 26 N 1.28847 * 125.74844 * 180.30079 * 2 1 3 27 27 H 1.08998 * 109.47301 * 269.72030 * 1 2 3 28 28 H 1.09002 * 109.46697 * 149.71755 * 1 2 3 29 29 H 1.09001 * 109.47190 * 29.72015 * 1 2 3 30 30 H 1.07999 * 126.19060 * 0.02562 * 3 2 1 31 31 H 1.09002 * 110.35495 * 322.88770 * 9 8 6 32 32 H 1.09005 * 110.35062 * 85.17133 * 9 8 6 33 33 H 1.09001 * 111.01473 * 81.68429 * 10 9 8 34 34 H 1.08997 * 111.01814 * 205.52413 * 10 9 8 35 35 H 1.09000 * 109.90729 * 297.85505 * 12 8 6 36 36 H 1.09002 * 109.91258 * 59.12048 * 12 8 6 37 37 H 1.09005 * 109.68249 * 191.75037 * 13 11 10 38 38 H 1.08997 * 109.67855 * 312.26048 * 13 11 10 39 39 H 0.97000 * 119.99723 * 180.02562 * 18 17 15 40 40 H 1.08995 * 109.62667 * 68.60531 * 23 14 13 41 41 H 1.08999 * 109.62648 * 188.98237 * 23 14 13 42 42 H 1.08993 * 109.51293 * 172.80268 * 24 23 14 43 43 H 1.08999 * 109.51434 * 292.95745 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2512 1.0922 0.0000 4 7 3.4951 0.6852 0.0029 5 6 3.4750 -0.6602 -0.0040 6 6 4.6575 -1.5481 -0.0080 7 8 4.5114 -2.7548 -0.0138 8 7 5.8973 -1.0193 -0.0058 9 6 6.2181 0.4202 0.0012 10 6 7.6401 0.5147 -0.6086 11 6 8.3034 -0.7615 -0.0440 12 6 7.1557 -1.7826 -0.0035 13 6 9.4121 -1.2325 -0.9795 14 7 10.5440 -0.2966 -0.8666 15 6 11.1332 0.2373 -1.9815 16 1 11.6378 1.1902 -1.9218 17 6 11.0819 -0.4465 -3.1885 18 7 10.7654 -1.7240 -3.2082 19 14 11.4620 0.4463 -4.7846 20 1 12.8460 0.9823 -4.7345 21 1 11.3391 -0.5000 -5.9225 22 1 10.5037 1.5661 -4.9657 23 6 11.0217 0.0461 0.4825 24 6 9.8209 0.4859 1.3277 25 8 8.8054 -0.5202 1.2630 26 7 2.2178 -1.0457 -0.0055 27 1 -0.3634 -0.0050 1.0276 28 1 -0.3633 -0.8875 -0.5182 29 1 -0.3633 0.8925 -0.5095 30 1 1.9164 2.1190 0.0004 31 1 5.5049 0.9706 -0.6125 32 1 6.2168 0.8039 1.0215 33 1 7.6012 0.4859 -1.6975 34 1 8.1556 1.4102 -0.2616 35 1 7.2230 -2.3846 0.9027 36 1 7.2019 -2.4248 -0.8830 37 1 9.7337 -2.2338 -0.6928 38 1 9.0458 -1.2445 -2.0060 39 1 10.7299 -2.2019 -4.0515 40 1 11.4899 -0.8265 0.9377 41 1 11.7455 0.8586 0.4191 42 1 10.1343 0.6209 2.3628 43 1 9.4275 1.4257 0.9401 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972369728.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:42 Heat of formation + Delta-G solvation = 67.691618 kcal Electronic energy + Delta-G solvation = -27996.782184 eV Core-core repulsion = 24081.094149 eV Total energy + Delta-G solvation = -3915.688035 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.59683 -40.05228 -38.53204 -36.02926 -34.80068 -34.41292 -31.92554 -31.49121 -31.17980 -29.39977 -28.39004 -27.25342 -25.80962 -24.06730 -23.36804 -22.49593 -22.17564 -21.16732 -19.64144 -18.79835 -17.67148 -17.11259 -16.95856 -16.57415 -16.06120 -15.64864 -15.13298 -14.78300 -14.75947 -14.34427 -14.17673 -13.78676 -13.63450 -13.44727 -13.35421 -12.75626 -12.67648 -12.57754 -12.31046 -12.05917 -11.92844 -11.28328 -11.05600 -10.89076 -10.80654 -10.70532 -10.61795 -10.49810 -10.28526 -10.15292 -9.99477 -9.88865 -9.72717 -9.49047 -8.99873 -8.50565 -8.37481 -6.72231 -5.82314 -3.25437 1.28801 1.96451 1.98651 2.98824 3.36352 3.42780 3.43330 3.44027 3.95858 4.08797 4.27885 4.44481 4.49304 4.57076 4.76793 4.87316 5.08110 5.10071 5.36879 5.49254 5.54365 5.74301 5.75964 5.85808 5.91325 5.99488 6.04327 6.12349 6.17351 6.22343 6.31272 6.37321 6.45221 6.59114 6.62010 6.69161 6.82883 7.10068 7.48031 7.62104 7.72777 7.82613 7.97145 8.28691 8.34671 9.12600 9.75798 10.33418 11.25997 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.017398 B = 0.003455 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.040240 B = 8101.817227 C = 8658.015550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.308 5.308 3 C 0.187 3.813 4 N -0.478 5.478 5 C 0.156 3.844 6 C 0.624 3.376 7 O -0.525 6.525 8 N -0.592 5.592 9 C 0.105 3.895 10 C -0.145 4.145 11 C 0.085 3.915 12 C 0.128 3.872 13 C 0.164 3.836 14 N -0.592 5.592 15 C -0.253 4.253 16 H 0.068 0.932 17 C 0.003 3.997 18 N -0.902 5.902 19 Si 0.903 3.097 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.283 1.283 23 C 0.109 3.891 24 C 0.046 3.954 25 O -0.377 6.377 26 N -0.255 5.255 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.226 0.774 31 H 0.095 0.905 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.030 0.970 38 H 0.097 0.903 39 H 0.256 0.744 40 H 0.026 0.974 41 H 0.062 0.938 42 H 0.082 0.918 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.906 8.557 7.444 22.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.104 5.104 3 C -0.109 4.109 4 N -0.204 5.204 5 C -0.124 4.124 6 C 0.408 3.592 7 O -0.399 6.399 8 N -0.325 5.325 9 C -0.017 4.017 10 C -0.183 4.183 11 C 0.043 3.957 12 C 0.006 3.994 13 C 0.038 3.962 14 N -0.316 5.316 15 C -0.383 4.383 16 H 0.086 0.914 17 C -0.195 4.195 18 N -0.547 5.547 19 Si 0.733 3.267 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.210 1.210 23 C -0.017 4.017 24 C -0.032 4.032 25 O -0.296 6.296 26 N -0.094 5.094 27 H 0.108 0.892 28 H 0.118 0.882 29 H 0.120 0.880 30 H 0.242 0.758 31 H 0.113 0.887 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.048 0.952 38 H 0.115 0.885 39 H 0.066 0.934 40 H 0.044 0.956 41 H 0.081 0.919 42 H 0.100 0.900 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -19.005 7.173 7.440 21.633 hybrid contribution 0.004 0.953 -1.011 1.389 sum -19.002 8.126 6.429 21.643 Atomic orbital electron populations 1.22229 0.72370 1.05919 1.04912 1.47399 1.09268 1.03931 1.49760 1.26587 0.86047 0.95962 1.02293 1.71431 1.19781 1.09499 1.19668 1.23686 0.91945 0.89378 1.07414 1.15813 0.79959 0.85445 0.78017 1.90824 1.85064 1.13386 1.50632 1.48209 1.04270 1.09286 1.70783 1.22615 0.97259 0.80317 1.01513 1.23218 0.93848 0.99565 1.01712 1.22673 0.93988 0.93868 0.85127 1.21866 0.80273 0.93967 1.03280 1.21195 0.85159 0.91774 0.98082 1.44049 1.33912 1.53348 1.00266 1.19112 1.31938 1.00343 0.86860 0.91420 1.25039 1.00784 0.94934 0.98785 1.69998 1.52368 1.06749 1.25543 0.86356 0.78314 0.78822 0.83198 1.20894 1.21586 1.20962 1.21592 0.94275 0.98512 0.87350 1.23098 0.89529 0.90783 0.99745 1.87675 1.55502 1.58891 1.27543 1.74350 1.02842 1.13147 1.19105 0.89197 0.88220 0.88025 0.75800 0.88714 0.91523 0.89660 0.89366 0.90300 0.89307 0.95221 0.88452 0.93384 0.95604 0.91939 0.89983 0.93323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.29 11.38 59.85 0.68 0.97 16 2 N -0.31 -2.87 3.72 -69.39 -0.26 -3.13 16 3 C 0.19 1.63 12.62 -90.48 -1.14 0.48 16 4 N -0.48 -6.37 8.47 -12.36 -0.10 -6.47 16 5 C 0.16 2.51 7.79 -156.35 -1.22 1.29 16 6 C 0.62 11.72 7.86 -12.31 -0.10 11.62 16 7 O -0.53 -11.29 17.41 5.32 0.09 -11.20 16 8 N -0.59 -10.62 3.33 -171.77 -0.57 -11.20 16 9 C 0.11 1.68 6.13 -2.44 -0.01 1.67 16 10 C -0.15 -2.58 5.91 -24.87 -0.15 -2.73 16 11 C 0.09 1.67 0.83 -89.72 -0.07 1.59 16 12 C 0.13 2.42 6.25 -3.32 -0.02 2.40 16 13 C 0.16 3.87 3.95 -3.85 -0.02 3.85 16 14 N -0.59 -14.44 2.94 -172.18 -0.51 -14.94 16 15 C -0.25 -6.71 9.66 -15.05 -0.15 -6.86 16 16 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16 17 C 0.00 0.09 4.96 -17.43 -0.09 0.01 16 18 N -0.90 -25.73 11.13 55.49 0.62 -25.12 16 19 Si 0.90 21.28 29.58 -169.99 -5.03 16.25 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 C 0.11 2.24 6.72 -3.53 -0.02 2.22 16 24 C 0.05 0.81 6.76 37.30 0.25 1.06 16 25 O -0.38 -7.32 10.21 -35.23 -0.36 -7.68 16 26 N -0.26 -3.72 12.08 32.08 0.39 -3.33 16 27 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 28 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.10 0.00 8.14 -51.93 -0.42 -0.42 16 30 H 0.23 0.71 8.06 -52.49 -0.42 0.28 16 31 H 0.09 1.44 6.16 -51.93 -0.32 1.12 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.08 1.62 7.86 -51.93 -0.41 1.22 16 34 H 0.09 1.53 5.98 -51.93 -0.31 1.22 16 35 H 0.08 1.49 8.06 -51.93 -0.42 1.07 16 36 H 0.09 1.72 7.79 -51.93 -0.40 1.32 16 37 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.10 2.53 5.99 -51.93 -0.31 2.21 16 39 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 1.21 7.96 -51.93 -0.41 0.79 16 42 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.05 0.82 6.13 -51.93 -0.32 0.50 16 LS Contribution 348.19 15.07 5.25 5.25 Total: -1.00 -35.51 348.19 -8.37 -43.88 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -5.83 Total: 0.11 kcal Atomic # 6 Polarization: 19.64 SS G_CDS: -2.05 Total: 17.59 kcal Atomic # 7 Polarization: -63.76 SS G_CDS: -0.44 Total: -64.19 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.27 Total: -18.88 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -35.51 -8.37 -43.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972369728.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.576 kcal (2) G-P(sol) polarization free energy of solvation -35.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds