Wall clock time and date at job start Fri Apr 10 2020 18:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34577 * 125.74696 * 2 1 4 4 N 1.30877 * 107.62588 * 179.86552 * 3 2 1 5 5 C 1.34551 * 107.26565 * 0.38803 * 4 3 2 6 6 C 1.47873 * 126.04814 * 179.79301 * 5 4 3 7 7 O 1.21554 * 120.00082 * 179.97438 * 6 5 4 8 8 N 1.34781 * 119.99702 * 359.95523 * 6 5 4 9 9 C 1.47482 * 125.66390 * 0.02562 * 8 6 5 10 10 C 1.55020 * 104.90135 * 204.02620 * 9 8 6 11 11 C 1.54509 * 101.51949 * 323.62531 * 10 9 8 12 12 C 1.47185 * 125.65873 * 179.72261 * 8 6 5 13 13 C 1.52524 * 110.05858 * 153.09965 * 11 10 9 14 14 N 1.47299 * 108.38058 * 72.02576 * 13 11 10 15 15 C 1.36944 * 121.05720 * 229.39718 * 14 13 11 16 16 H 1.07997 * 120.00257 * 153.85520 * 15 14 13 17 17 C 1.38816 * 119.99679 * 333.85121 * 15 14 13 18 18 N 1.31622 * 119.99918 * 343.62701 * 17 15 14 19 19 Si 1.86795 * 119.99692 * 163.63121 * 17 15 14 20 20 H 1.48498 * 109.47346 * 59.99896 * 19 17 15 21 21 H 1.48504 * 109.46827 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47021 * 299.99905 * 19 17 15 23 23 C 1.47160 * 117.88470 * 49.41715 * 14 13 11 24 24 C 1.53285 * 108.54114 * 308.88424 * 23 14 13 25 25 O 1.42065 * 110.33870 * 276.04941 * 11 10 9 26 26 N 1.28847 * 125.74844 * 180.30079 * 2 1 3 27 27 H 1.08998 * 109.47301 * 269.72030 * 1 2 3 28 28 H 1.09002 * 109.46697 * 149.71755 * 1 2 3 29 29 H 1.09001 * 109.47190 * 29.72015 * 1 2 3 30 30 H 1.07999 * 126.19060 * 0.02562 * 3 2 1 31 31 H 1.09002 * 110.35495 * 322.88770 * 9 8 6 32 32 H 1.09005 * 110.35062 * 85.17133 * 9 8 6 33 33 H 1.09001 * 111.01473 * 81.68429 * 10 9 8 34 34 H 1.08997 * 111.01814 * 205.52413 * 10 9 8 35 35 H 1.09000 * 109.90729 * 297.85505 * 12 8 6 36 36 H 1.09002 * 109.91258 * 59.12048 * 12 8 6 37 37 H 1.09005 * 109.68249 * 191.75037 * 13 11 10 38 38 H 1.08997 * 109.67855 * 312.26048 * 13 11 10 39 39 H 0.97000 * 119.99723 * 180.02562 * 18 17 15 40 40 H 1.08995 * 109.62667 * 68.60531 * 23 14 13 41 41 H 1.08999 * 109.62648 * 188.98237 * 23 14 13 42 42 H 1.08993 * 109.51293 * 172.80268 * 24 23 14 43 43 H 1.08999 * 109.51434 * 292.95745 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2512 1.0922 0.0000 4 7 3.4951 0.6852 0.0029 5 6 3.4750 -0.6602 -0.0040 6 6 4.6575 -1.5481 -0.0080 7 8 4.5114 -2.7548 -0.0138 8 7 5.8973 -1.0193 -0.0058 9 6 6.2181 0.4202 0.0012 10 6 7.6401 0.5147 -0.6086 11 6 8.3034 -0.7615 -0.0440 12 6 7.1557 -1.7826 -0.0035 13 6 9.4121 -1.2325 -0.9795 14 7 10.5440 -0.2966 -0.8666 15 6 11.1332 0.2373 -1.9815 16 1 11.6378 1.1902 -1.9218 17 6 11.0819 -0.4465 -3.1885 18 7 10.7654 -1.7240 -3.2082 19 14 11.4620 0.4463 -4.7846 20 1 12.8460 0.9823 -4.7345 21 1 11.3391 -0.5000 -5.9225 22 1 10.5037 1.5661 -4.9657 23 6 11.0217 0.0461 0.4825 24 6 9.8209 0.4859 1.3277 25 8 8.8054 -0.5202 1.2630 26 7 2.2178 -1.0457 -0.0055 27 1 -0.3634 -0.0050 1.0276 28 1 -0.3633 -0.8875 -0.5182 29 1 -0.3633 0.8925 -0.5095 30 1 1.9164 2.1190 0.0004 31 1 5.5049 0.9706 -0.6125 32 1 6.2168 0.8039 1.0215 33 1 7.6012 0.4859 -1.6975 34 1 8.1556 1.4102 -0.2616 35 1 7.2230 -2.3846 0.9027 36 1 7.2019 -2.4248 -0.8830 37 1 9.7337 -2.2338 -0.6928 38 1 9.0458 -1.2445 -2.0060 39 1 10.7299 -2.2019 -4.0515 40 1 11.4899 -0.8265 0.9377 41 1 11.7455 0.8586 0.4191 42 1 10.1343 0.6209 2.3628 43 1 9.4275 1.4257 0.9401 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972369728.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:41 Heat of formation + Delta-G solvation = 43.113130 kcal Electronic energy + Delta-G solvation = -27997.847987 eV Core-core repulsion = 24081.094149 eV Total energy + Delta-G solvation = -3916.753838 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.45528 -41.57174 -40.05460 -37.57433 -36.25200 -35.54783 -33.24840 -32.89906 -32.79438 -30.89007 -29.46483 -28.70647 -27.31216 -25.50206 -24.88878 -23.66725 -23.31861 -22.65443 -20.87405 -20.39201 -18.94999 -18.80342 -17.86554 -17.63828 -17.49251 -17.08599 -16.61887 -16.27835 -16.10693 -15.79169 -15.66912 -15.25927 -15.14059 -14.52924 -14.37893 -14.20208 -13.96971 -13.88069 -13.60998 -13.56835 -13.09525 -12.86886 -12.75488 -12.60474 -12.47550 -12.33342 -12.17502 -11.90341 -11.81482 -11.57798 -11.45514 -11.26075 -11.12617 -10.74544 -10.59789 -10.44053 -9.81331 -8.70549 -7.87284 -5.33756 0.25106 1.12406 1.21619 1.48558 1.50754 1.57494 1.85572 2.17603 2.50071 2.76472 2.96256 3.25289 3.37620 3.46825 3.61374 3.82181 3.93798 3.99357 4.25853 4.34235 4.35039 4.40304 4.42152 4.51578 4.53932 4.68232 4.70469 4.74797 4.79474 4.85035 4.95780 5.04922 5.10330 5.15130 5.18282 5.28931 5.34357 5.52446 5.63937 5.69668 6.24152 6.31414 6.41589 6.73675 7.06573 7.08501 7.77876 8.32770 9.18913 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.017398 B = 0.003455 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.040240 B = 8101.817227 C = 8658.015550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.299 5.299 3 C 0.208 3.792 4 N -0.504 5.504 5 C 0.124 3.876 6 C 0.619 3.381 7 O -0.568 6.568 8 N -0.593 5.593 9 C 0.120 3.880 10 C -0.136 4.136 11 C 0.097 3.903 12 C 0.131 3.869 13 C 0.176 3.824 14 N -0.608 5.608 15 C -0.257 4.257 16 H 0.077 0.923 17 C -0.051 4.051 18 N -0.938 5.938 19 Si 0.967 3.033 20 H -0.275 1.275 21 H -0.299 1.299 22 H -0.274 1.274 23 C 0.103 3.897 24 C 0.052 3.948 25 O -0.382 6.382 26 N -0.283 5.283 27 H 0.108 0.892 28 H 0.094 0.906 29 H 0.145 0.855 30 H 0.284 0.716 31 H 0.108 0.892 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.100 0.900 35 H 0.075 0.925 36 H 0.072 0.928 37 H -0.006 1.006 38 H 0.068 0.932 39 H 0.249 0.751 40 H 0.014 0.986 41 H 0.077 0.923 42 H 0.120 0.880 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.972 12.267 8.360 25.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.094 5.094 3 C -0.086 4.086 4 N -0.230 5.230 5 C -0.154 4.154 6 C 0.405 3.595 7 O -0.445 6.445 8 N -0.326 5.326 9 C -0.001 4.001 10 C -0.174 4.174 11 C 0.055 3.945 12 C 0.008 3.992 13 C 0.050 3.950 14 N -0.332 5.332 15 C -0.387 4.387 16 H 0.095 0.905 17 C -0.246 4.246 18 N -0.584 5.584 19 Si 0.795 3.205 20 H -0.200 1.200 21 H -0.226 1.226 22 H -0.200 1.200 23 C -0.023 4.023 24 C -0.025 4.025 25 O -0.301 6.301 26 N -0.125 5.125 27 H 0.126 0.874 28 H 0.113 0.887 29 H 0.163 0.837 30 H 0.300 0.700 31 H 0.126 0.874 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.118 0.882 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.012 0.988 38 H 0.086 0.914 39 H 0.058 0.942 40 H 0.032 0.968 41 H 0.095 0.905 42 H 0.138 0.862 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -21.086 10.939 8.389 25.193 hybrid contribution 0.565 -0.163 -1.234 1.367 sum -20.521 10.776 7.155 24.258 Atomic orbital electron populations 1.22782 0.68944 1.07923 1.06755 1.47845 1.10949 1.02939 1.47714 1.27624 0.84474 0.97662 0.98878 1.71300 1.22666 1.07936 1.21092 1.23055 0.91356 0.90278 1.10727 1.16271 0.80826 0.85494 0.76945 1.90776 1.85844 1.15329 1.52550 1.48232 1.03782 1.09949 1.70597 1.22599 0.96038 0.79210 1.02240 1.23114 0.94950 0.98712 1.00660 1.22294 0.92608 0.94927 0.84673 1.21667 0.81177 0.93932 1.02380 1.20882 0.86372 0.90385 0.97382 1.44308 1.34305 1.53117 1.01486 1.19491 1.31055 1.00490 0.87645 0.90543 1.25810 1.01469 0.95493 1.01865 1.70179 1.54303 1.08310 1.25626 0.85341 0.78484 0.77567 0.79083 1.20032 1.22596 1.19951 1.21811 0.96130 0.98517 0.85796 1.23214 0.87532 0.90471 1.01325 1.87683 1.55950 1.59763 1.26750 1.74248 1.02877 1.15792 1.19559 0.87352 0.88692 0.83657 0.70047 0.87369 0.90255 0.91368 0.88184 0.90643 0.90996 0.98805 0.91407 0.94165 0.96814 0.90507 0.86187 0.91887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.22 11.38 127.77 1.45 1.67 16 2 N -0.30 -4.68 3.72 -373.45 -1.39 -6.07 16 3 C 0.21 2.78 12.62 180.30 2.27 5.05 16 4 N -0.50 -12.26 8.47 -193.03 -1.64 -13.89 16 5 C 0.12 3.96 7.79 137.13 1.07 5.02 16 6 C 0.62 23.98 7.86 86.79 0.68 24.66 16 7 O -0.57 -25.77 17.41 -3.89 -0.07 -25.84 16 8 N -0.59 -21.71 3.33 -815.62 -2.72 -24.43 16 9 C 0.12 3.72 6.13 86.88 0.53 4.25 16 10 C -0.14 -4.76 5.91 31.80 0.19 -4.57 16 11 C 0.10 3.86 0.83 -10.21 -0.01 3.85 16 12 C 0.13 5.21 6.25 86.48 0.54 5.75 16 13 C 0.18 8.70 3.95 86.07 0.34 9.04 16 14 N -0.61 -30.04 2.94 -698.64 -2.06 -32.09 16 15 C -0.26 -13.68 9.66 84.03 0.81 -12.87 16 16 H 0.08 3.87 7.88 -2.91 -0.02 3.85 16 17 C -0.05 -2.82 4.96 84.86 0.42 -2.40 16 18 N -0.94 -55.78 11.13 21.65 0.24 -55.53 16 19 Si 0.97 44.26 29.58 68.60 2.03 46.29 16 20 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 21 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 23 C 0.10 4.13 6.72 86.35 0.58 4.71 16 24 C 0.05 1.68 6.76 72.08 0.49 2.17 16 25 O -0.38 -14.48 10.21 -148.97 -1.52 -16.00 16 26 N -0.28 -8.01 12.08 -52.43 -0.63 -8.64 16 27 H 0.11 0.00 8.14 -2.39 -0.02 -0.02 16 28 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.15 -0.80 8.14 -2.39 -0.02 -0.82 16 30 H 0.28 -0.07 8.06 -2.91 -0.02 -0.10 16 31 H 0.11 3.11 6.16 -2.39 -0.01 3.10 16 32 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 33 H 0.07 2.63 7.86 -2.39 -0.02 2.61 16 34 H 0.10 3.26 5.98 -2.39 -0.01 3.24 16 35 H 0.08 3.01 8.06 -2.39 -0.02 2.99 16 36 H 0.07 3.05 7.79 -2.39 -0.02 3.03 16 37 H -0.01 -0.34 8.14 -2.38 -0.02 -0.36 16 38 H 0.07 3.74 5.99 -2.39 -0.01 3.73 16 39 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 40 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.08 2.84 7.96 -2.39 -0.02 2.82 16 42 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16 43 H 0.06 1.92 6.13 -2.39 -0.01 1.90 16 Total: -1.00 -82.52 348.19 2.66 -79.86 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: 1.03 Total: 10.01 kcal Atomic # 6 Polarization: 36.98 SS G_CDS: 9.37 Total: 46.35 kcal Atomic # 7 Polarization: -132.47 SS G_CDS: -8.19 Total: -140.66 kcal Atomic # 8 Polarization: -40.25 SS G_CDS: -1.59 Total: -41.84 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -82.52 2.66 -79.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972369728.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.975 kcal (2) G-P(sol) polarization free energy of solvation -82.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds