Wall clock time and date at job start Fri Apr 10 2020 18:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53006 * 109.46800 * 171.21380 * 3 2 1 5 5 N 1.46499 * 109.47061 * 180.02562 * 4 3 2 6 6 C 1.46497 * 120.00323 * 89.99923 * 5 4 3 7 7 C 1.50700 * 109.47128 * 89.99929 * 6 5 4 8 8 H 1.07999 * 119.99988 * 0.02562 * 7 6 5 9 9 C 1.37885 * 120.00047 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99792 * 359.72305 * 9 7 6 11 11 Si 1.86795 * 120.00009 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47088 * 89.99795 * 11 9 7 13 13 H 1.48495 * 109.47293 * 209.99997 * 11 9 7 14 14 H 1.48507 * 109.47015 * 329.99955 * 11 9 7 15 15 C 1.34780 * 120.00151 * 270.00315 * 5 4 3 16 16 O 1.21280 * 120.00031 * 180.02562 * 15 5 4 17 17 C 1.50699 * 119.99530 * 359.97438 * 15 5 4 18 18 N 1.46899 * 109.46796 * 180.02562 * 17 15 5 19 19 C 1.47851 * 110.99955 * 66.05246 * 18 17 15 20 20 C 1.52601 * 111.50850 * 177.44691 * 19 18 17 21 21 O 1.43909 * 111.60601 * 309.47202 * 20 19 18 22 22 C 1.41604 * 110.78941 * 56.12614 * 21 20 19 23 23 H 1.08999 * 110.24020 * 56.17087 * 22 21 20 24 24 C 1.53154 * 116.72117 * 182.96032 * 22 21 20 25 25 C 1.55309 * 102.99101 * 157.01687 * 24 22 21 26 26 C 1.54897 * 106.35402 * 336.05933 * 25 24 22 27 27 C 1.45527 * 110.99909 * 186.38700 * 18 17 15 28 28 H 1.08999 * 109.76120 * 293.24499 * 27 18 17 29 29 H 1.09004 * 109.47093 * 51.21772 * 3 2 1 30 30 H 1.08996 * 109.47327 * 291.21496 * 3 2 1 31 31 H 1.08996 * 109.47314 * 60.00279 * 4 3 2 32 32 H 1.08996 * 109.47275 * 300.00148 * 4 3 2 33 33 H 1.09004 * 109.47268 * 330.00069 * 6 5 4 34 34 H 1.08997 * 109.47471 * 210.00476 * 6 5 4 35 35 H 0.97000 * 119.99468 * 179.97438 * 10 9 7 36 36 H 1.08999 * 109.47417 * 300.00368 * 17 15 5 37 37 H 1.09007 * 109.47053 * 60.00759 * 17 15 5 38 38 H 1.09000 * 109.06506 * 297.96965 * 19 18 17 39 39 H 1.08995 * 109.06929 * 56.99500 * 19 18 17 40 40 H 1.09001 * 109.05277 * 70.01776 * 20 19 18 41 41 H 1.09004 * 109.05165 * 188.99287 * 20 19 18 42 42 H 1.09007 * 110.70795 * 275.39029 * 24 22 21 43 43 H 1.08991 * 110.71261 * 38.63673 * 24 22 21 44 44 H 1.09003 * 110.07876 * 95.28156 * 25 24 22 45 45 H 1.09004 * 110.07931 * 216.77356 * 25 24 22 46 46 H 1.08992 * 110.26785 * 115.54478 * 26 25 24 47 47 H 1.09002 * 110.26056 * 237.50126 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1173 1.4265 -0.2204 5 7 4.5823 1.4272 -0.2210 6 6 5.3144 1.2339 -1.4751 7 6 5.5647 2.5718 -2.1220 8 1 5.2140 3.4757 -1.6462 9 6 6.2416 2.6419 -3.3212 10 7 6.6735 1.5415 -3.8978 11 14 6.5525 4.3002 -4.1226 12 1 7.8479 4.8462 -3.6441 13 1 6.5992 4.1362 -5.5978 14 1 5.4575 5.2368 -3.7631 15 6 5.2566 1.6055 0.9323 16 8 6.4694 1.6065 0.9317 17 6 4.5035 1.8048 2.2223 18 7 5.4585 1.9761 3.3253 19 6 6.2281 3.2290 3.1702 20 6 7.1796 3.4499 4.3425 21 8 6.5037 3.3170 5.6060 22 6 5.8696 2.0548 5.7065 23 1 6.5952 1.2553 5.5567 24 6 5.0484 1.7956 6.9730 25 6 4.0591 0.6847 6.5263 26 6 3.9330 0.8061 4.9873 27 6 4.7717 2.0213 4.6075 28 1 4.1624 2.9231 4.6676 29 1 2.9716 -0.6429 -0.8011 30 1 2.9715 -0.3710 0.9580 31 1 2.7537 2.0701 0.5807 32 1 2.7538 1.7982 -1.1783 33 1 4.7253 0.6099 -2.1472 34 1 6.2670 0.7463 -1.2683 35 1 7.1494 1.5909 -4.7416 36 1 3.8767 2.6931 2.1436 37 1 3.8770 0.9340 2.4156 38 1 6.8055 3.1801 2.2470 39 1 5.5347 4.0679 3.1125 40 1 7.9844 2.7166 4.2907 41 1 7.6054 4.4508 4.2714 42 1 5.6880 1.4401 7.7810 43 1 4.5093 2.6939 7.2735 44 1 4.4525 -0.2962 6.7934 45 1 3.0874 0.8382 6.9957 46 1 4.3250 -0.0890 4.5046 47 1 2.8916 0.9613 4.7050 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000363469421.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:50 Heat of formation + Delta-G solvation = -41.450268 kcal Electronic energy + Delta-G solvation = -28137.622153 eV Core-core repulsion = 24320.741714 eV Total energy + Delta-G solvation = -3816.880439 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -40.60984 -39.12929 -36.91923 -36.25831 -35.65413 -34.97811 -32.91220 -30.86880 -29.93575 -28.76213 -28.35365 -26.96730 -24.69304 -24.02062 -22.72965 -22.26259 -20.73119 -20.02319 -18.49826 -17.64676 -16.95034 -16.61084 -16.47287 -15.91932 -15.65604 -15.53951 -15.15873 -14.76413 -14.55903 -14.53935 -14.16017 -13.95076 -13.56071 -13.47338 -13.19878 -12.83668 -12.61467 -12.48495 -12.44405 -12.10587 -11.96687 -11.74668 -11.55509 -11.37369 -11.30378 -11.19242 -11.02299 -10.99827 -10.86035 -10.78975 -10.65419 -10.44417 -10.20091 -9.73815 -9.63132 -8.95015 -8.49958 -8.32910 -7.86441 -6.11652 -4.16464 2.69803 2.78213 3.25830 3.26952 3.33763 3.35595 3.44872 3.59755 3.86127 4.21203 4.35549 4.39660 4.48069 4.78534 4.89488 4.95073 5.06072 5.09131 5.12319 5.18464 5.19161 5.22341 5.24703 5.27194 5.37186 5.42383 5.44371 5.56775 5.58401 5.67951 5.75231 5.79218 5.83249 5.87537 6.00945 6.03515 6.05787 6.14833 6.78301 6.89225 7.02542 7.13863 7.34345 7.40945 7.54445 7.84351 8.14400 8.23718 8.81628 8.97406 9.49251 10.96387 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.011129 B = 0.004064 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.237453 B = 6887.896240 C = 8892.951729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C 0.217 3.783 3 C -0.051 4.051 4 C 0.118 3.882 5 N -0.598 5.598 6 C 0.246 3.754 7 C -0.529 4.529 8 H 0.057 0.943 9 C 0.063 3.937 10 N -0.893 5.893 11 Si 0.896 3.104 12 H -0.279 1.279 13 H -0.286 1.286 14 H -0.275 1.275 15 C 0.509 3.491 16 O -0.516 6.516 17 C 0.028 3.972 18 N -0.495 5.495 19 C 0.010 3.990 20 C 0.065 3.935 21 O -0.377 6.377 22 C 0.085 3.915 23 H 0.076 0.924 24 C -0.113 4.113 25 C -0.117 4.117 26 C -0.117 4.117 27 C 0.034 3.966 28 H 0.050 0.950 29 H 0.118 0.882 30 H 0.106 0.894 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.034 0.966 34 H 0.047 0.953 35 H 0.264 0.736 36 H 0.059 0.941 37 H 0.099 0.901 38 H 0.116 0.884 39 H 0.035 0.965 40 H 0.062 0.938 41 H 0.097 0.903 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.069 0.931 46 H 0.079 0.921 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.114 -1.501 18.057 18.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.123 5.123 2 C -0.101 4.101 3 C -0.092 4.092 4 C -0.009 4.009 5 N -0.331 5.331 6 C 0.127 3.873 7 C -0.568 4.568 8 H 0.075 0.925 9 C -0.139 4.139 10 N -0.531 5.531 11 Si 0.724 3.276 12 H -0.205 1.205 13 H -0.212 1.212 14 H -0.200 1.200 15 C 0.295 3.705 16 O -0.391 6.391 17 C -0.103 4.103 18 N -0.219 5.219 19 C -0.118 4.118 20 C -0.011 4.011 21 O -0.295 6.295 22 C 0.026 3.974 23 H 0.093 0.907 24 C -0.151 4.151 25 C -0.155 4.155 26 C -0.155 4.155 27 C -0.075 4.075 28 H 0.068 0.932 29 H 0.136 0.864 30 H 0.124 0.876 31 H 0.091 0.909 32 H 0.113 0.887 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.117 0.883 38 H 0.134 0.866 39 H 0.053 0.947 40 H 0.080 0.920 41 H 0.116 0.884 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.089 0.911 45 H 0.088 0.912 46 H 0.097 0.903 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.694 -1.837 17.991 18.959 hybrid contribution -0.066 1.440 -0.936 1.719 sum -5.760 -0.397 17.055 18.005 Atomic orbital electron populations 1.81209 1.13045 1.08671 1.09335 1.29114 0.95109 0.93097 0.92810 1.19911 0.81320 1.01935 1.06054 1.21297 0.82383 0.92988 1.04239 1.48226 1.04724 1.70705 1.09415 1.19336 0.92630 0.97201 0.78104 1.21402 1.36837 0.92975 1.05584 0.92488 1.24910 0.95284 0.96699 0.97012 1.69920 1.38089 1.26984 1.18144 0.86533 0.78771 0.83951 0.78376 1.20544 1.21151 1.19967 1.20141 0.88237 0.77788 0.84310 1.90648 1.13574 1.49012 1.85842 1.22208 0.94627 1.02312 0.91161 1.62536 1.23338 1.35950 1.00120 1.23048 0.97731 0.89464 1.01529 1.22685 0.94190 1.02437 0.81823 1.87997 1.70469 1.34691 1.36371 1.22740 0.93459 0.86699 0.94490 0.90658 1.22135 0.97456 0.99303 0.96232 1.22386 0.99268 0.98737 0.95095 1.21879 0.99357 0.98315 0.95952 1.22826 0.95664 0.98232 0.90804 0.93200 0.86398 0.87602 0.90906 0.88727 0.94772 0.93499 0.92652 0.92329 0.88281 0.86607 0.94660 0.92004 0.88445 0.90723 0.90705 0.91119 0.91233 0.90273 0.91464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.41 18.54 42.15 0.78 -5.63 16 2 C 0.22 2.54 15.43 -20.76 -0.32 2.22 16 3 C -0.05 -0.51 6.03 -29.51 -0.18 -0.69 16 4 C 0.12 1.52 5.17 -4.04 -0.02 1.50 16 5 N -0.60 -10.60 2.46 -175.06 -0.43 -11.03 16 6 C 0.25 5.69 5.16 -5.20 -0.03 5.67 16 7 C -0.53 -13.85 9.39 -34.44 -0.32 -14.18 16 8 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 9 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 10 N -0.89 -25.17 13.29 55.43 0.74 -24.43 16 11 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 14 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 15 C 0.51 9.11 7.41 -10.98 -0.08 9.02 16 16 O -0.52 -11.48 13.88 5.56 0.08 -11.40 16 17 C 0.03 0.37 3.86 -4.98 -0.02 0.35 16 18 N -0.50 -6.81 4.54 -227.40 -1.03 -7.84 16 19 C 0.01 0.14 5.13 -3.50 -0.02 0.12 16 20 C 0.07 0.82 6.86 36.95 0.25 1.08 16 21 O -0.38 -4.92 10.88 -35.18 -0.38 -5.31 16 22 C 0.08 0.97 3.08 -25.39 -0.08 0.89 16 23 H 0.08 0.91 8.12 -51.93 -0.42 0.49 16 24 C -0.11 -0.99 6.74 -25.43 -0.17 -1.16 16 25 C -0.12 -0.87 6.87 -24.51 -0.17 -1.04 16 26 C -0.12 -1.04 5.56 -26.01 -0.14 -1.19 16 27 C 0.03 0.39 1.99 -67.47 -0.13 0.26 16 28 H 0.05 0.60 8.09 -51.93 -0.42 0.18 16 29 H 0.12 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.11 0.86 7.22 -51.93 -0.38 0.49 16 31 H 0.07 0.79 6.44 -51.93 -0.33 0.46 16 32 H 0.09 1.32 8.07 -51.93 -0.42 0.90 16 33 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 34 H 0.05 1.25 7.42 -51.93 -0.39 0.86 16 35 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 36 H 0.06 0.72 7.36 -51.93 -0.38 0.34 16 37 H 0.10 1.05 6.30 -51.93 -0.33 0.73 16 38 H 0.12 1.99 5.91 -51.93 -0.31 1.69 16 39 H 0.04 0.49 8.11 -51.93 -0.42 0.07 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 379.07 15.07 5.71 5.71 Total: -1.00 -32.12 379.07 -8.65 -40.76 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -7.56 Total: -1.23 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: -1.53 Total: 4.47 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: 0.06 Total: -48.93 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -0.31 Total: -16.71 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.12 -8.65 -40.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363469421.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.686 kcal (2) G-P(sol) polarization free energy of solvation -32.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds