Wall clock time and date at job start Fri Apr 10 2020 18:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53006 * 109.46800 * 171.21380 * 3 2 1 5 5 N 1.46499 * 109.47061 * 180.02562 * 4 3 2 6 6 C 1.46497 * 120.00323 * 89.99923 * 5 4 3 7 7 C 1.50700 * 109.47128 * 89.99929 * 6 5 4 8 8 H 1.07999 * 119.99988 * 0.02562 * 7 6 5 9 9 C 1.37885 * 120.00047 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99792 * 359.72305 * 9 7 6 11 11 Si 1.86795 * 120.00009 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47088 * 89.99795 * 11 9 7 13 13 H 1.48495 * 109.47293 * 209.99997 * 11 9 7 14 14 H 1.48507 * 109.47015 * 329.99955 * 11 9 7 15 15 C 1.34780 * 120.00151 * 270.00315 * 5 4 3 16 16 O 1.21280 * 120.00031 * 180.02562 * 15 5 4 17 17 C 1.50699 * 119.99530 * 359.97438 * 15 5 4 18 18 N 1.46899 * 109.46796 * 180.02562 * 17 15 5 19 19 C 1.47851 * 110.99955 * 66.05246 * 18 17 15 20 20 C 1.52601 * 111.50850 * 177.44691 * 19 18 17 21 21 O 1.43909 * 111.60601 * 309.47202 * 20 19 18 22 22 C 1.41604 * 110.78941 * 56.12614 * 21 20 19 23 23 H 1.08999 * 110.24020 * 56.17087 * 22 21 20 24 24 C 1.53154 * 116.72117 * 182.96032 * 22 21 20 25 25 C 1.55309 * 102.99101 * 157.01687 * 24 22 21 26 26 C 1.54897 * 106.35402 * 336.05933 * 25 24 22 27 27 C 1.45527 * 110.99909 * 186.38700 * 18 17 15 28 28 H 1.08999 * 109.76120 * 293.24499 * 27 18 17 29 29 H 1.09004 * 109.47093 * 51.21772 * 3 2 1 30 30 H 1.08996 * 109.47327 * 291.21496 * 3 2 1 31 31 H 1.08996 * 109.47314 * 60.00279 * 4 3 2 32 32 H 1.08996 * 109.47275 * 300.00148 * 4 3 2 33 33 H 1.09004 * 109.47268 * 330.00069 * 6 5 4 34 34 H 1.08997 * 109.47471 * 210.00476 * 6 5 4 35 35 H 0.97000 * 119.99468 * 179.97438 * 10 9 7 36 36 H 1.08999 * 109.47417 * 300.00368 * 17 15 5 37 37 H 1.09007 * 109.47053 * 60.00759 * 17 15 5 38 38 H 1.09000 * 109.06506 * 297.96965 * 19 18 17 39 39 H 1.08995 * 109.06929 * 56.99500 * 19 18 17 40 40 H 1.09001 * 109.05277 * 70.01776 * 20 19 18 41 41 H 1.09004 * 109.05165 * 188.99287 * 20 19 18 42 42 H 1.09007 * 110.70795 * 275.39029 * 24 22 21 43 43 H 1.08991 * 110.71261 * 38.63673 * 24 22 21 44 44 H 1.09003 * 110.07876 * 95.28156 * 25 24 22 45 45 H 1.09004 * 110.07931 * 216.77356 * 25 24 22 46 46 H 1.08992 * 110.26785 * 115.54478 * 26 25 24 47 47 H 1.09002 * 110.26056 * 237.50126 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1173 1.4265 -0.2204 5 7 4.5823 1.4272 -0.2210 6 6 5.3144 1.2339 -1.4751 7 6 5.5647 2.5718 -2.1220 8 1 5.2140 3.4757 -1.6462 9 6 6.2416 2.6419 -3.3212 10 7 6.6735 1.5415 -3.8978 11 14 6.5525 4.3002 -4.1226 12 1 7.8479 4.8462 -3.6441 13 1 6.5992 4.1362 -5.5978 14 1 5.4575 5.2368 -3.7631 15 6 5.2566 1.6055 0.9323 16 8 6.4694 1.6065 0.9317 17 6 4.5035 1.8048 2.2223 18 7 5.4585 1.9761 3.3253 19 6 6.2281 3.2290 3.1702 20 6 7.1796 3.4499 4.3425 21 8 6.5037 3.3170 5.6060 22 6 5.8696 2.0548 5.7065 23 1 6.5952 1.2553 5.5567 24 6 5.0484 1.7956 6.9730 25 6 4.0591 0.6847 6.5263 26 6 3.9330 0.8061 4.9873 27 6 4.7717 2.0213 4.6075 28 1 4.1624 2.9231 4.6676 29 1 2.9716 -0.6429 -0.8011 30 1 2.9715 -0.3710 0.9580 31 1 2.7537 2.0701 0.5807 32 1 2.7538 1.7982 -1.1783 33 1 4.7253 0.6099 -2.1472 34 1 6.2670 0.7463 -1.2683 35 1 7.1494 1.5909 -4.7416 36 1 3.8767 2.6931 2.1436 37 1 3.8770 0.9340 2.4156 38 1 6.8055 3.1801 2.2470 39 1 5.5347 4.0679 3.1125 40 1 7.9844 2.7166 4.2907 41 1 7.6054 4.4508 4.2714 42 1 5.6880 1.4401 7.7810 43 1 4.5093 2.6939 7.2735 44 1 4.4525 -0.2962 6.7934 45 1 3.0874 0.8382 6.9957 46 1 4.3250 -0.0890 4.5046 47 1 2.8916 0.9613 4.7050 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000363469421.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:48 Heat of formation + Delta-G solvation = -62.819931 kcal Electronic energy + Delta-G solvation = -28138.548812 eV Core-core repulsion = 24320.741714 eV Total energy + Delta-G solvation = -3817.807097 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.62227 -40.43869 -38.00623 -37.13235 -36.84136 -36.19469 -34.84103 -32.15578 -31.06189 -29.93115 -29.11724 -28.45776 -25.87321 -25.30196 -24.13817 -23.41293 -21.53984 -20.91082 -19.81619 -18.81448 -18.32850 -18.10809 -17.53185 -17.17074 -16.69669 -16.68869 -16.37161 -16.07592 -15.71886 -15.67115 -15.41142 -14.92929 -14.65781 -14.47633 -14.32523 -14.22322 -13.80062 -13.62747 -13.53700 -13.28271 -13.26101 -13.06178 -12.78679 -12.70012 -12.53634 -12.36888 -12.17516 -12.15165 -12.11718 -11.88982 -11.81388 -11.65612 -11.52662 -11.24950 -10.70598 -10.58471 -10.27465 -9.45660 -9.38037 -8.17440 -6.29561 1.39500 1.41693 1.50139 1.68955 1.84791 1.91003 2.20694 2.43253 2.70814 2.83398 3.12578 3.16831 3.57140 3.73182 3.73864 3.94746 4.07347 4.08734 4.11576 4.13714 4.23714 4.34041 4.42509 4.44636 4.46997 4.53138 4.61884 4.66835 4.73715 4.82973 4.85947 4.96558 5.05528 5.05901 5.11069 5.13359 5.22765 5.24926 5.35633 5.43994 5.62356 5.78881 5.89289 6.03029 6.14094 6.17743 6.61182 6.76855 6.83280 7.35821 7.56195 8.89108 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.011129 B = 0.004064 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.237453 B = 6887.896240 C = 8892.951729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C 0.246 3.754 3 C -0.038 4.038 4 C 0.113 3.887 5 N -0.599 5.599 6 C 0.262 3.738 7 C -0.539 4.539 8 H 0.052 0.948 9 C 0.013 3.987 10 N -0.925 5.925 11 Si 0.955 3.045 12 H -0.283 1.283 13 H -0.279 1.279 14 H -0.264 1.264 15 C 0.504 3.496 16 O -0.569 6.569 17 C 0.040 3.960 18 N -0.511 5.511 19 C 0.014 3.986 20 C 0.069 3.931 21 O -0.386 6.386 22 C 0.075 3.925 23 H 0.063 0.937 24 C -0.109 4.109 25 C -0.110 4.110 26 C -0.115 4.115 27 C 0.036 3.964 28 H 0.047 0.953 29 H 0.121 0.879 30 H 0.137 0.863 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.034 0.966 34 H 0.004 0.996 35 H 0.265 0.735 36 H 0.076 0.924 37 H 0.134 0.866 38 H 0.081 0.919 39 H 0.037 0.963 40 H 0.053 0.947 41 H 0.112 0.888 42 H 0.084 0.916 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.087 0.913 46 H 0.076 0.924 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.054 -1.324 19.846 21.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.166 5.166 2 C -0.071 4.071 3 C -0.079 4.079 4 C -0.011 4.011 5 N -0.330 5.330 6 C 0.141 3.859 7 C -0.577 4.577 8 H 0.070 0.930 9 C -0.187 4.187 10 N -0.565 5.565 11 Si 0.781 3.219 12 H -0.209 1.209 13 H -0.205 1.205 14 H -0.189 1.189 15 C 0.292 3.708 16 O -0.447 6.447 17 C -0.091 4.091 18 N -0.235 5.235 19 C -0.114 4.114 20 C -0.008 4.008 21 O -0.305 6.305 22 C 0.016 3.984 23 H 0.081 0.919 24 C -0.147 4.147 25 C -0.148 4.148 26 C -0.153 4.153 27 C -0.073 4.073 28 H 0.065 0.935 29 H 0.139 0.861 30 H 0.154 0.846 31 H 0.120 0.880 32 H 0.102 0.898 33 H 0.052 0.948 34 H 0.022 0.978 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.152 0.848 38 H 0.100 0.900 39 H 0.056 0.944 40 H 0.072 0.928 41 H 0.130 0.870 42 H 0.102 0.898 43 H 0.094 0.906 44 H 0.098 0.902 45 H 0.105 0.895 46 H 0.095 0.905 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.690 -1.660 19.803 21.308 hybrid contribution 0.584 1.375 -1.471 2.097 sum -7.106 -0.285 18.331 19.662 Atomic orbital electron populations 1.81255 1.14370 1.09998 1.11004 1.29130 0.94912 0.91762 0.91343 1.19834 0.80119 1.00037 1.07887 1.21507 0.79199 0.95453 1.04981 1.48087 1.06644 1.70521 1.07755 1.18773 0.91470 0.95435 0.80240 1.21740 1.36345 0.93991 1.05658 0.92963 1.25695 0.95258 0.99884 0.97828 1.70024 1.39020 1.28871 1.18596 0.85598 0.78507 0.80172 0.77638 1.20920 1.20464 1.18873 1.21001 0.87897 0.76309 0.85580 1.90634 1.16169 1.51169 1.86735 1.22182 0.94081 1.04490 0.88305 1.62503 1.24120 1.35587 1.01306 1.22897 0.97829 0.90080 1.00609 1.22642 0.93579 1.03079 0.81460 1.87986 1.70665 1.35688 1.36135 1.22969 0.93464 0.85630 0.96293 0.91856 1.22171 0.97435 0.99930 0.95151 1.22387 0.99783 0.98632 0.94017 1.21929 0.99686 0.96726 0.96952 1.22902 0.95734 0.99487 0.89161 0.93499 0.86139 0.84554 0.87974 0.89832 0.94837 0.97795 0.92607 0.90608 0.84803 0.90034 0.94438 0.92816 0.86998 0.89770 0.90592 0.90194 0.89483 0.90540 0.89716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -13.07 18.54 20.01 0.37 -12.70 16 2 C 0.25 5.11 15.43 89.44 1.38 6.49 16 3 C -0.04 -0.65 6.03 28.79 0.17 -0.48 16 4 C 0.11 2.68 5.17 86.38 0.45 3.13 16 5 N -0.60 -20.95 2.46 -826.16 -2.03 -22.98 16 6 C 0.26 12.45 5.16 85.63 0.44 12.89 16 7 C -0.54 -28.71 9.39 25.60 0.24 -28.47 16 8 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 9 C 0.01 0.69 5.46 84.66 0.46 1.15 16 10 N -0.93 -53.31 13.29 21.45 0.28 -53.03 16 11 Si 0.96 43.31 29.54 68.60 2.03 45.34 16 12 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 13 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 14 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 15 C 0.50 17.87 7.41 87.66 0.65 18.52 16 16 O -0.57 -26.27 13.88 -3.03 -0.04 -26.32 16 17 C 0.04 0.97 3.86 85.56 0.33 1.30 16 18 N -0.51 -13.46 4.54 -873.37 -3.96 -17.42 16 19 C 0.01 0.40 5.13 85.99 0.44 0.84 16 20 C 0.07 1.75 6.86 71.85 0.49 2.25 16 21 O -0.39 -9.78 10.88 -148.80 -1.62 -11.40 16 22 C 0.07 1.60 3.08 31.46 0.10 1.70 16 23 H 0.06 1.49 8.12 -2.39 -0.02 1.47 16 24 C -0.11 -1.62 6.74 31.44 0.21 -1.41 16 25 C -0.11 -1.25 6.87 32.04 0.22 -1.03 16 26 C -0.12 -1.64 5.56 31.06 0.17 -1.47 16 27 C 0.04 0.74 1.99 45.81 0.09 0.83 16 28 H 0.05 1.01 8.09 -2.39 -0.02 0.99 16 29 H 0.12 2.15 8.14 -2.38 -0.02 2.13 16 30 H 0.14 1.62 7.22 -2.39 -0.02 1.60 16 31 H 0.10 1.85 6.44 -2.39 -0.02 1.84 16 32 H 0.08 2.20 8.07 -2.39 -0.02 2.18 16 33 H 0.03 1.58 8.07 -2.38 -0.02 1.56 16 34 H 0.00 0.22 7.42 -2.39 -0.02 0.20 16 35 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 36 H 0.08 1.63 7.36 -2.39 -0.02 1.61 16 37 H 0.13 2.29 6.30 -2.38 -0.02 2.27 16 38 H 0.08 2.95 5.91 -2.39 -0.01 2.94 16 39 H 0.04 1.03 8.11 -2.39 -0.02 1.01 16 40 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.11 2.43 8.14 -2.38 -0.02 2.41 16 42 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 43 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 46 H 0.08 1.16 8.14 -2.39 -0.02 1.15 16 47 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -72.81 379.07 1.84 -70.97 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: 0.96 Total: 11.29 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: 5.85 Total: 16.24 kcal Atomic # 7 Polarization: -100.79 SS G_CDS: -5.34 Total: -106.13 kcal Atomic # 8 Polarization: -36.05 SS G_CDS: -1.66 Total: -37.71 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -72.81 1.84 -70.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363469421.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.153 kcal (2) G-P(sol) polarization free energy of solvation -72.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds