Wall clock time and date at job start Fri Apr 10 2020 18:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52994 * 109.47290 * 59.75334 * 3 2 1 5 5 N 1.46505 * 109.47022 * 179.97438 * 4 3 2 6 6 C 1.46496 * 119.99896 * 269.99674 * 5 4 3 7 7 C 1.50699 * 109.47398 * 270.00022 * 6 5 4 8 8 H 1.08003 * 120.00015 * 0.02562 * 7 6 5 9 9 C 1.37873 * 120.00048 * 180.02562 * 7 6 5 10 10 N 1.31522 * 119.99916 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 120.00086 * 0.02562 * 9 7 6 12 12 H 1.48494 * 109.47340 * 89.99836 * 11 9 7 13 13 H 1.48500 * 109.47003 * 210.00191 * 11 9 7 14 14 H 1.48498 * 109.47056 * 329.99743 * 11 9 7 15 15 C 1.34777 * 119.99832 * 90.00138 * 5 4 3 16 16 O 1.21278 * 119.99854 * 180.02562 * 15 5 4 17 17 C 1.50703 * 120.00161 * 359.97438 * 15 5 4 18 18 N 1.46899 * 109.47107 * 180.02562 * 17 15 5 19 19 C 1.46904 * 111.00029 * 179.97438 * 18 17 15 20 20 H 1.08997 * 110.74672 * 34.30110 * 19 18 17 21 21 C 1.55303 * 110.84746 * 270.82757 * 19 18 17 22 22 C 1.54944 * 100.94010 * 207.67411 * 21 19 18 23 23 O 1.43646 * 105.13702 * 36.45012 * 22 21 19 24 24 C 1.43589 * 110.00773 * 335.38356 * 23 22 21 25 25 H 1.08998 * 109.79293 * 121.38187 * 24 23 22 26 26 C 1.52999 * 110.04651 * 242.46727 * 24 23 22 27 27 C 1.53001 * 117.49833 * 6.66773 * 26 24 23 28 28 C 1.52995 * 59.99978 * 252.50775 * 27 26 24 29 29 H 1.09005 * 109.46890 * 299.74981 * 3 2 1 30 30 H 1.09000 * 109.46631 * 179.75108 * 3 2 1 31 31 H 1.08997 * 109.47614 * 59.99744 * 4 3 2 32 32 H 1.09000 * 109.47099 * 299.99487 * 4 3 2 33 33 H 1.09000 * 109.47082 * 30.00019 * 6 5 4 34 34 H 1.09004 * 109.46754 * 150.00286 * 6 5 4 35 35 H 0.96999 * 119.99664 * 180.02562 * 10 9 7 36 36 H 1.09002 * 109.47152 * 60.00245 * 17 15 5 37 37 H 1.09001 * 109.46980 * 300.00345 * 17 15 5 38 38 H 1.00908 * 110.99847 * 56.05051 * 18 17 15 39 39 H 1.08995 * 111.12725 * 325.59864 * 21 19 18 40 40 H 1.08999 * 111.12187 * 89.72111 * 21 19 18 41 41 H 1.08998 * 110.31107 * 155.36340 * 22 21 19 42 42 H 1.09001 * 110.31314 * 277.53442 * 22 21 19 43 43 H 1.09005 * 115.54686 * 152.37191 * 26 24 23 44 44 H 1.09001 * 117.49759 * 359.97438 * 27 26 24 45 45 H 1.08999 * 117.49617 * 145.01949 * 27 26 24 46 46 H 1.09002 * 117.50124 * 252.51376 * 28 27 26 47 47 H 1.09003 * 117.50364 * 107.48817 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1183 -0.7257 -1.2461 5 7 4.5834 -0.7245 -1.2463 6 6 5.3148 0.3720 -1.8857 7 6 5.5660 0.0321 -3.3322 8 1 5.2155 -0.9067 -3.7351 9 6 6.2434 0.9195 -4.1413 10 7 6.4631 0.6226 -5.4036 11 14 6.8503 2.5429 -3.4444 12 1 8.2238 2.3685 -2.9075 13 1 6.8651 3.5681 -4.5186 14 1 5.9444 2.9826 -2.3530 15 6 5.2582 -1.7322 -0.6583 16 8 6.4710 -1.7309 -0.6581 17 6 4.5057 -2.8599 -0.0001 18 7 5.4612 -3.8233 0.5627 19 6 4.7620 -4.9388 1.2145 20 1 3.8376 -5.1756 0.6876 21 6 4.4805 -4.6177 2.7077 22 6 4.4553 -6.0429 3.3151 23 8 5.4616 -6.7746 2.5972 24 6 5.6749 -6.1802 1.3076 25 1 6.7181 -5.8804 1.2074 26 6 5.3112 -7.1760 0.2045 27 6 4.6649 -8.4961 0.6295 28 6 6.1126 -8.4774 0.1351 29 1 2.9715 -0.5091 0.8923 30 1 2.9708 1.0285 -0.0045 31 1 2.7548 -0.2160 -2.1383 32 1 2.7556 -1.7535 -1.2416 33 1 4.7250 1.2866 -1.8246 34 1 6.2672 0.5191 -1.3764 35 1 6.9399 1.2468 -5.9727 36 1 3.8790 -3.3587 -0.7394 37 1 3.8792 -2.4615 0.7979 38 1 6.0958 -3.3708 1.2036 39 1 5.2838 -4.0208 3.1393 40 1 3.5175 -4.1217 2.8280 41 1 4.6996 -6.0060 4.3768 42 1 3.4770 -6.5002 3.1669 43 1 4.9841 -6.7354 -0.7374 44 1 4.4993 -8.6553 1.6950 45 1 3.9124 -8.9242 -0.0328 46 1 6.3127 -8.8932 -0.8525 47 1 6.8993 -8.6241 0.8752 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000372804241.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:06 Heat of formation + Delta-G solvation = -17.560379 kcal Electronic energy + Delta-G solvation = -27220.262330 eV Core-core repulsion = 23404.417834 eV Total energy + Delta-G solvation = -3815.844496 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.26653 -39.37262 -37.01756 -36.53912 -35.66927 -35.16599 -32.84068 -31.15983 -30.99320 -29.45122 -28.17166 -25.70488 -24.09259 -23.32925 -22.49444 -22.18250 -21.43516 -20.24441 -18.68283 -17.86897 -17.13932 -16.99835 -16.84797 -16.19890 -15.93195 -15.39467 -15.14818 -14.93017 -14.80181 -14.35405 -14.15297 -13.78294 -13.75105 -13.59837 -12.95855 -12.82538 -12.74556 -12.57093 -12.52826 -12.34177 -12.19904 -11.84623 -11.68225 -11.63640 -11.56362 -11.48882 -11.24443 -11.12296 -10.91688 -10.59321 -10.39593 -10.24527 -10.17808 -9.67594 -9.61518 -9.18036 -8.63961 -8.50843 -7.95414 -6.13219 -4.13045 2.60499 2.68999 3.13865 3.24191 3.28748 3.31320 3.36371 3.56186 3.71152 3.89179 4.12213 4.26414 4.34407 4.57245 4.69350 4.79253 4.81214 4.83636 4.90556 4.93850 4.99568 5.08999 5.13908 5.15563 5.20213 5.32144 5.33983 5.40391 5.48471 5.57817 5.60138 5.63267 5.67346 5.82545 5.86694 5.95602 6.07620 6.12332 6.49849 6.70442 6.81482 6.88126 7.15358 7.21871 7.45255 7.53628 8.03140 8.39999 8.79397 8.91176 9.46004 11.00075 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.011442 B = 0.003297 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.472971 B = 8490.881852 C = 9952.425346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C 0.215 3.785 3 C -0.050 4.050 4 C 0.117 3.883 5 N -0.593 5.593 6 C 0.216 3.784 7 C -0.532 4.532 8 H 0.076 0.924 9 C 0.073 3.927 10 N -0.895 5.895 11 Si 0.875 3.125 12 H -0.273 1.273 13 H -0.285 1.285 14 H -0.266 1.266 15 C 0.509 3.491 16 O -0.517 6.517 17 C 0.040 3.960 18 N -0.657 5.657 19 C 0.067 3.933 20 H 0.096 0.904 21 C -0.192 4.192 22 C 0.055 3.945 23 O -0.377 6.377 24 C 0.118 3.882 25 H 0.096 0.904 26 C -0.163 4.163 27 C -0.173 4.173 28 C -0.173 4.173 29 H 0.105 0.895 30 H 0.116 0.884 31 H 0.097 0.903 32 H 0.078 0.922 33 H 0.032 0.968 34 H 0.039 0.961 35 H 0.265 0.735 36 H 0.100 0.900 37 H 0.055 0.945 38 H 0.355 0.645 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.059 0.941 43 H 0.114 0.886 44 H 0.100 0.900 45 H 0.087 0.913 46 H 0.091 0.909 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.396 -11.086 16.985 21.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.118 5.118 2 C -0.103 4.103 3 C -0.092 4.092 4 C -0.009 4.009 5 N -0.326 5.326 6 C 0.096 3.904 7 C -0.570 4.570 8 H 0.094 0.906 9 C -0.129 4.129 10 N -0.533 5.533 11 Si 0.702 3.298 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.190 1.190 15 C 0.294 3.706 16 O -0.391 6.391 17 C -0.092 4.092 18 N -0.290 5.290 19 C -0.045 4.045 20 H 0.115 0.885 21 C -0.231 4.231 22 C -0.022 4.022 23 O -0.296 6.296 24 C 0.060 3.940 25 H 0.113 0.887 26 C -0.181 4.181 27 C -0.210 4.210 28 C -0.210 4.210 29 H 0.123 0.877 30 H 0.134 0.866 31 H 0.116 0.884 32 H 0.096 0.904 33 H 0.050 0.950 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.118 0.882 37 H 0.073 0.927 38 H 0.175 0.825 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.078 0.922 43 H 0.132 0.868 44 H 0.119 0.881 45 H 0.106 0.894 46 H 0.110 0.890 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.118 -11.503 16.269 21.158 hybrid contribution 0.225 1.553 0.781 1.753 sum -6.893 -9.950 17.050 20.910 Atomic orbital electron populations 1.81224 1.13003 1.08987 1.08625 1.29055 0.95058 0.93061 0.93169 1.19895 0.81499 1.05647 1.02135 1.21328 0.81870 1.00967 0.96781 1.47880 1.04859 1.24401 1.55436 1.19713 0.92483 0.84236 0.93993 1.21303 1.37316 1.05950 0.92460 0.90631 1.24861 0.95204 0.98186 0.94695 1.69895 1.41202 1.36627 1.05590 0.86872 0.80156 0.83759 0.78984 1.19891 1.21125 1.19039 1.20218 0.88218 0.82696 0.79430 1.90709 1.13586 1.76356 1.58456 1.21960 0.94721 0.93216 0.99308 1.59990 1.18167 1.10780 1.40025 1.23147 0.97169 0.91939 0.92210 0.88550 1.24020 1.03391 0.98345 0.97357 1.23209 0.92202 0.90168 0.96596 1.88491 1.58515 1.54412 1.28153 1.22200 0.99950 0.90049 0.81798 0.88670 1.22682 1.05769 0.89581 1.00093 1.22879 0.95800 1.00175 1.02135 1.22884 0.94866 1.00799 1.02446 0.87698 0.86630 0.88431 0.90377 0.95038 0.94292 0.92500 0.88214 0.92741 0.82458 0.89980 0.89881 0.89877 0.92242 0.86780 0.88128 0.89404 0.89022 0.88772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.01 18.54 42.15 0.78 -5.23 16 2 C 0.21 2.31 15.43 -20.76 -0.32 1.99 16 3 C -0.05 -0.44 6.03 -29.52 -0.18 -0.62 16 4 C 0.12 1.40 5.17 -4.04 -0.02 1.38 16 5 N -0.59 -9.94 2.46 -175.06 -0.43 -10.37 16 6 C 0.22 4.63 4.23 -5.20 -0.02 4.60 16 7 C -0.53 -14.23 9.94 -34.44 -0.34 -14.57 16 8 H 0.08 2.24 8.06 -52.48 -0.42 1.82 16 9 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 10 N -0.90 -26.72 13.96 55.43 0.77 -25.95 16 11 Si 0.88 20.41 27.47 -169.99 -4.67 15.74 16 12 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 13 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.27 -5.67 6.54 56.52 0.37 -5.30 16 15 C 0.51 8.59 7.71 -10.98 -0.08 8.51 16 16 O -0.52 -11.23 15.78 5.56 0.09 -11.14 16 17 C 0.04 0.46 4.60 -4.98 -0.02 0.44 16 18 N -0.66 -7.73 5.93 -105.93 -0.63 -8.35 16 19 C 0.07 0.62 2.80 -65.76 -0.18 0.44 16 20 H 0.10 0.86 7.57 -51.93 -0.39 0.47 16 21 C -0.19 -1.43 6.75 -24.48 -0.17 -1.59 16 22 C 0.06 0.43 7.78 38.18 0.30 0.73 16 23 O -0.38 -3.96 9.45 -35.23 -0.33 -4.29 16 24 C 0.12 1.24 3.66 -26.01 -0.10 1.14 16 25 H 0.10 1.13 8.02 -51.93 -0.42 0.71 16 26 C -0.16 -1.69 5.56 -90.62 -0.50 -2.19 16 27 C -0.17 -1.62 9.88 -26.73 -0.26 -1.89 16 28 C -0.17 -1.71 10.22 -26.73 -0.27 -1.99 16 29 H 0.10 0.69 7.22 -51.93 -0.37 0.32 16 30 H 0.12 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.10 1.29 8.07 -51.93 -0.42 0.87 16 32 H 0.08 0.77 6.44 -51.93 -0.33 0.44 16 33 H 0.03 0.63 7.13 -51.93 -0.37 0.26 16 34 H 0.04 0.90 6.85 -51.93 -0.36 0.55 16 35 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.10 1.08 7.34 -51.93 -0.38 0.70 16 37 H 0.05 0.46 7.18 -51.93 -0.37 0.08 16 38 H 0.35 4.25 7.95 -39.29 -0.31 3.94 16 39 H 0.08 0.62 7.78 -51.93 -0.40 0.22 16 40 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.11 1.23 8.12 -51.93 -0.42 0.81 16 44 H 0.10 0.97 7.07 -51.93 -0.37 0.61 16 45 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 389.67 15.07 5.87 5.87 Total: -1.00 -33.81 389.67 -8.30 -42.10 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -7.47 Total: 3.30 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -2.28 Total: -1.67 kcal Atomic # 7 Polarization: -50.40 SS G_CDS: 0.50 Total: -49.90 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.25 Total: -15.43 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.67 Total: 15.74 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.81 -8.30 -42.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000372804241.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.541 kcal (2) G-P(sol) polarization free energy of solvation -33.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds