Wall clock time and date at job start Fri Apr 10 2020 18:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86805 * 119.99662 * 2 1 4 4 H 1.48500 * 109.47053 * 275.61010 * 3 2 1 5 5 H 1.48500 * 109.47006 * 35.61181 * 3 2 1 6 6 H 1.48501 * 109.46762 * 155.61240 * 3 2 1 7 7 C 1.38810 * 120.00065 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00120 * 337.55361 * 7 2 1 9 9 N 1.36936 * 119.99653 * 157.56120 * 7 2 1 10 10 C 1.46499 * 120.00297 * 321.47128 * 9 7 2 11 11 N 1.46508 * 109.46954 * 270.00622 * 10 9 7 12 12 C 1.47259 * 125.57905 * 269.71416 * 11 10 9 13 13 C 1.53565 * 103.52187 * 179.86900 * 12 11 10 14 14 C 1.52581 * 110.21803 * 119.73522 * 13 12 11 15 15 N 1.47114 * 108.95891 * 121.16010 * 14 13 12 16 16 C 1.46940 * 111.01334 * 298.58794 * 15 14 13 17 17 C 1.53113 * 109.60306 * 62.33604 * 16 15 14 18 18 C 1.52900 * 110.48015 * 241.13730 * 13 12 11 19 19 C 1.53525 * 108.57038 * 179.12659 * 18 13 12 20 20 C 1.46955 * 110.92047 * 62.34554 * 15 14 13 21 21 O 1.45061 * 104.60342 * 0.39047 * 13 12 11 22 22 C 1.33974 * 109.22027 * 359.73499 * 21 13 12 23 23 O 1.21512 * 123.09173 * 180.02562 * 22 21 13 24 24 C 1.46509 * 120.00018 * 141.47659 * 9 7 2 25 25 C 1.52997 * 117.49997 * 55.56994 * 24 9 7 26 26 C 1.52998 * 60.00420 * 252.51602 * 25 24 9 27 27 H 0.96993 * 120.00248 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.46855 * 30.00037 * 10 9 7 29 29 H 1.08995 * 109.47095 * 150.00444 * 10 9 7 30 30 H 1.08997 * 110.61383 * 298.50557 * 12 11 10 31 31 H 1.09002 * 110.61089 * 61.48659 * 12 11 10 32 32 H 1.09008 * 109.55556 * 241.00271 * 14 13 12 33 33 H 1.08998 * 109.56017 * 1.31183 * 14 13 12 34 34 H 1.09002 * 109.44835 * 302.29910 * 16 15 14 35 35 H 1.08994 * 109.43026 * 182.36305 * 16 15 14 36 36 H 1.09008 * 109.58450 * 239.54047 * 17 16 15 37 37 H 1.08998 * 109.58354 * 119.12655 * 17 16 15 38 38 H 1.08994 * 110.25890 * 58.23695 * 18 13 12 39 39 H 1.08999 * 109.57116 * 178.22513 * 19 18 13 40 40 H 1.09004 * 109.57367 * 298.59766 * 19 18 13 41 41 H 1.09000 * 109.45880 * 58.07112 * 20 15 14 42 42 H 1.08998 * 109.46715 * 178.04907 * 20 15 14 43 43 H 1.08994 * 115.56332 * 201.26762 * 24 9 7 44 44 H 1.08994 * 117.49761 * 145.01844 * 25 24 9 45 45 H 1.09003 * 117.49794 * 0.02562 * 25 24 9 46 46 H 1.08996 * 117.49734 * 107.48894 * 26 25 24 47 47 H 1.09000 * 117.49658 * 252.51505 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3791 2.1149 -1.3934 5 1 1.5118 2.6156 0.8153 6 1 3.6020 1.4089 0.5781 7 6 2.0103 -1.2021 -0.0005 8 1 1.5317 -2.1022 0.3562 9 7 3.3019 -1.2467 -0.4532 10 6 3.6990 -0.4473 -1.6149 11 7 3.5023 -1.2308 -2.8371 12 6 4.5062 -2.1069 -3.4641 13 6 3.7753 -2.6694 -4.6919 14 6 4.5123 -2.2784 -5.9694 15 7 4.8990 -3.5005 -6.6912 16 6 5.8074 -4.3250 -5.8825 17 6 5.0930 -4.7747 -4.6051 18 6 3.6721 -4.1922 -4.6019 19 6 2.9170 -4.7049 -5.8364 20 6 3.7132 -4.2691 -7.0946 21 8 2.4594 -2.0607 -4.6448 22 6 2.3806 -1.2630 -3.5713 23 8 1.3843 -0.6272 -3.2888 24 6 4.2867 -2.0940 0.2241 25 6 3.9570 -3.5808 0.3716 26 6 3.9075 -2.6614 1.5936 27 1 -0.4850 0.8400 -0.0004 28 1 3.0898 0.4554 -1.6600 29 1 4.7499 -0.1724 -1.5246 30 1 5.3818 -1.5323 -3.7663 31 1 4.7896 -2.9121 -2.7863 32 1 3.8576 -1.6749 -6.5982 33 1 5.4050 -1.7068 -5.7153 34 1 6.6894 -3.7413 -5.6187 35 1 6.1101 -5.2007 -6.4565 36 1 5.6387 -4.4117 -3.7341 37 1 5.0418 -5.8632 -4.5790 38 1 3.1475 -4.4818 -3.6914 39 1 2.8615 -5.7930 -5.8046 40 1 1.9106 -4.2863 -5.8488 41 1 3.0729 -3.6472 -7.7201 42 1 4.0248 -5.1497 -7.6563 43 1 5.3301 -1.8234 0.0628 44 1 4.7836 -4.2883 0.3072 45 1 3.0076 -3.9286 -0.0356 46 1 2.9255 -2.4043 1.9905 47 1 4.7017 -2.7641 2.3331 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495856521.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:41 Heat of formation + Delta-G solvation = 11.765731 kcal Electronic energy + Delta-G solvation = -29924.108209 eV Core-core repulsion = 26109.535389 eV Total energy + Delta-G solvation = -3814.572820 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.89749 -39.57860 -37.38551 -36.16045 -34.83850 -33.00729 -32.38831 -31.36458 -30.90892 -30.44499 -26.43071 -25.17795 -23.76468 -23.44509 -23.17620 -22.22776 -21.56563 -20.67673 -19.83770 -18.10399 -17.29349 -17.01318 -16.60893 -16.13139 -15.85699 -15.52480 -15.49750 -14.96955 -14.55857 -14.08506 -13.69193 -13.64275 -13.24287 -13.17838 -13.00522 -12.83222 -12.48773 -12.40760 -12.37113 -12.19241 -12.08965 -11.93937 -11.69937 -11.11161 -11.07571 -10.92383 -10.80949 -10.75396 -10.44381 -10.24730 -10.13972 -10.08298 -9.70891 -9.64685 -9.52724 -8.52080 -8.46264 -8.23966 -6.96839 -6.00553 -3.48766 3.10922 3.29541 3.41479 3.44440 3.58086 3.72999 3.81382 4.28364 4.33116 4.48478 4.54980 4.71058 4.73766 4.76221 4.85113 4.89596 4.97805 5.03949 5.18523 5.21782 5.32441 5.39123 5.48820 5.55431 5.59008 5.62235 5.67770 5.72501 5.74305 5.84960 5.87360 5.89730 5.94183 6.01770 6.07570 6.13532 6.29007 6.36523 6.43442 6.77339 6.78441 6.82867 7.03513 7.20813 7.96158 8.12452 8.35874 8.85833 8.93939 9.64753 9.94286 11.13773 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.017281 B = 0.005035 C = 0.004458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.890463 B = 5560.225244 C = 6279.969646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.065 3.935 3 Si 0.863 3.137 4 H -0.280 1.280 5 H -0.295 1.295 6 H -0.266 1.266 7 C -0.290 4.290 8 H 0.078 0.922 9 N -0.553 5.553 10 C 0.368 3.632 11 N -0.629 5.629 12 C 0.076 3.924 13 C 0.071 3.929 14 C 0.054 3.946 15 N -0.522 5.522 16 C 0.048 3.952 17 C -0.148 4.148 18 C -0.087 4.087 19 C -0.146 4.146 20 C 0.051 3.949 21 O -0.330 6.330 22 C 0.632 3.368 23 O -0.494 6.494 24 C 0.113 3.887 25 C -0.217 4.217 26 C -0.185 4.185 27 H 0.266 0.734 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.092 0.908 44 H 0.074 0.926 45 H 0.087 0.913 46 H 0.105 0.895 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.154 -9.056 -10.926 20.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.140 4.140 3 Si 0.692 3.308 4 H -0.208 1.208 5 H -0.222 1.222 6 H -0.191 1.191 7 C -0.418 4.418 8 H 0.095 0.905 9 N -0.271 5.271 10 C 0.163 3.837 11 N -0.383 5.383 12 C -0.049 4.049 13 C 0.030 3.970 14 C -0.075 4.075 15 N -0.242 5.242 16 C -0.080 4.080 17 C -0.187 4.187 18 C -0.106 4.106 19 C -0.185 4.185 20 C -0.078 4.078 21 O -0.241 6.241 22 C 0.384 3.616 23 O -0.375 6.375 24 C 0.004 3.996 25 C -0.257 4.257 26 C -0.224 4.224 27 H 0.076 0.924 28 H 0.104 0.896 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.107 0.893 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.110 0.890 44 H 0.093 0.907 45 H 0.105 0.895 46 H 0.124 0.876 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 14.503 -8.436 -11.340 20.251 hybrid contribution -0.092 0.434 0.957 1.055 sum 14.411 -8.002 -10.383 19.481 Atomic orbital electron populations 1.69836 1.06084 1.26943 1.48147 1.25303 0.94859 0.97495 0.96312 0.87115 0.80914 0.85515 0.77289 1.20807 1.22208 1.19064 1.18450 0.86186 0.94622 1.42505 0.90466 1.44375 1.07963 1.49238 1.25554 1.21599 0.97867 0.89858 0.74403 1.50316 1.12354 1.48072 1.27533 1.22843 0.93173 0.95183 0.93681 1.23301 0.81990 0.94180 0.97492 1.22621 0.99616 0.93109 0.92153 1.62730 1.15576 1.06197 1.39743 1.22271 0.95526 0.97666 0.92529 1.22339 0.95071 1.01492 0.99820 1.21347 0.97035 0.91959 1.00272 1.22555 1.00297 1.01023 0.94626 1.22588 0.90817 0.98058 0.96304 1.87247 1.33504 1.58224 1.45121 1.18844 0.84773 0.79551 0.78417 1.91137 1.31511 1.44838 1.70039 1.21185 0.92045 0.90169 0.96158 1.23301 1.02317 0.95505 1.04624 1.23104 1.03455 1.04702 0.91135 0.92433 0.89603 0.91500 0.90305 0.89786 0.88785 0.88927 0.90357 0.90326 0.90802 0.90759 0.89310 0.91378 0.90367 0.90429 0.90410 0.88996 0.90731 0.89467 0.87623 0.90367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -27.40 13.97 55.49 0.78 -26.63 16 2 C 0.06 1.89 5.30 -17.43 -0.09 1.79 16 3 Si 0.86 21.99 25.09 -169.99 -4.27 17.73 16 4 H -0.28 -7.19 6.68 56.52 0.38 -6.81 16 5 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.29 -8.02 8.49 -15.06 -0.13 -8.14 16 8 H 0.08 2.36 7.43 -52.49 -0.39 1.97 16 9 N -0.55 -12.66 2.65 -169.34 -0.45 -13.11 16 10 C 0.37 7.84 5.43 -63.74 -0.35 7.50 16 11 N -0.63 -12.39 3.21 -182.68 -0.59 -12.98 16 12 C 0.08 1.07 6.41 -3.33 -0.02 1.05 16 13 C 0.07 0.97 0.80 -90.59 -0.07 0.90 16 14 C 0.05 0.60 5.65 -3.92 -0.02 0.58 16 15 N -0.52 -5.17 5.24 -233.15 -1.22 -6.39 16 16 C 0.05 0.39 6.07 -3.74 -0.02 0.37 16 17 C -0.15 -1.32 5.52 -26.38 -0.15 -1.47 16 18 C -0.09 -1.05 2.57 -90.10 -0.23 -1.28 16 19 C -0.15 -1.62 5.81 -25.33 -0.15 -1.77 16 20 C 0.05 0.49 6.12 -2.66 -0.02 0.48 16 21 O -0.33 -6.33 9.94 -38.34 -0.38 -6.72 16 22 C 0.63 14.50 8.85 53.75 0.48 14.98 16 23 O -0.49 -14.07 17.55 -19.10 -0.34 -14.40 16 24 C 0.11 2.12 6.61 -67.92 -0.45 1.67 16 25 C -0.22 -3.81 10.12 -26.73 -0.27 -4.08 16 26 C -0.19 -3.39 9.81 -26.73 -0.26 -3.65 16 27 H 0.27 7.97 8.31 -40.82 -0.34 7.63 16 28 H 0.09 2.12 3.20 -51.93 -0.17 1.95 16 29 H 0.07 1.16 8.04 -51.93 -0.42 0.75 16 30 H 0.08 0.88 7.08 -51.93 -0.37 0.52 16 31 H 0.08 1.13 6.57 -51.93 -0.34 0.79 16 32 H 0.09 1.15 7.96 -51.92 -0.41 0.74 16 33 H 0.09 0.90 7.03 -51.93 -0.37 0.53 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.64 6.66 -51.92 -0.35 0.29 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.08 1.03 7.84 -51.93 -0.41 0.63 16 41 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.09 1.46 8.10 -51.93 -0.42 1.04 16 44 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.09 1.78 8.07 -51.93 -0.42 1.36 16 46 H 0.11 2.24 6.93 -51.93 -0.36 1.89 16 47 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 LS Contribution 358.61 15.07 5.40 5.40 Total: -1.00 -34.27 358.61 -10.19 -44.46 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -7.38 Total: 3.70 kcal Atomic # 6 Polarization: 10.68 SS G_CDS: -1.75 Total: 8.92 kcal Atomic # 7 Polarization: -57.62 SS G_CDS: -1.48 Total: -59.10 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: -0.72 Total: -21.12 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.27 Total: 17.73 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.27 -10.19 -44.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495856521.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.222 kcal (2) G-P(sol) polarization free energy of solvation -34.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds