Wall clock time and date at job start Fri Apr 10 2020 18:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86805 * 119.99662 * 2 1 4 4 H 1.48500 * 109.47053 * 275.61010 * 3 2 1 5 5 H 1.48500 * 109.47006 * 35.61181 * 3 2 1 6 6 H 1.48501 * 109.46762 * 155.61240 * 3 2 1 7 7 C 1.38810 * 120.00065 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00120 * 337.55361 * 7 2 1 9 9 N 1.36936 * 119.99653 * 157.56120 * 7 2 1 10 10 C 1.46499 * 120.00297 * 321.47128 * 9 7 2 11 11 N 1.46508 * 109.46954 * 270.00622 * 10 9 7 12 12 C 1.47259 * 125.57905 * 269.71416 * 11 10 9 13 13 C 1.53565 * 103.52187 * 179.86900 * 12 11 10 14 14 C 1.52581 * 110.21803 * 119.73522 * 13 12 11 15 15 N 1.47114 * 108.95891 * 121.16010 * 14 13 12 16 16 C 1.46940 * 111.01334 * 298.58794 * 15 14 13 17 17 C 1.53113 * 109.60306 * 62.33604 * 16 15 14 18 18 C 1.52900 * 110.48015 * 241.13730 * 13 12 11 19 19 C 1.53525 * 108.57038 * 179.12659 * 18 13 12 20 20 C 1.46955 * 110.92047 * 62.34554 * 15 14 13 21 21 O 1.45061 * 104.60342 * 0.39047 * 13 12 11 22 22 C 1.33974 * 109.22027 * 359.73499 * 21 13 12 23 23 O 1.21512 * 123.09173 * 180.02562 * 22 21 13 24 24 C 1.46509 * 120.00018 * 141.47659 * 9 7 2 25 25 C 1.52997 * 117.49997 * 55.56994 * 24 9 7 26 26 C 1.52998 * 60.00420 * 252.51602 * 25 24 9 27 27 H 0.96993 * 120.00248 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.46855 * 30.00037 * 10 9 7 29 29 H 1.08995 * 109.47095 * 150.00444 * 10 9 7 30 30 H 1.08997 * 110.61383 * 298.50557 * 12 11 10 31 31 H 1.09002 * 110.61089 * 61.48659 * 12 11 10 32 32 H 1.09008 * 109.55556 * 241.00271 * 14 13 12 33 33 H 1.08998 * 109.56017 * 1.31183 * 14 13 12 34 34 H 1.09002 * 109.44835 * 302.29910 * 16 15 14 35 35 H 1.08994 * 109.43026 * 182.36305 * 16 15 14 36 36 H 1.09008 * 109.58450 * 239.54047 * 17 16 15 37 37 H 1.08998 * 109.58354 * 119.12655 * 17 16 15 38 38 H 1.08994 * 110.25890 * 58.23695 * 18 13 12 39 39 H 1.08999 * 109.57116 * 178.22513 * 19 18 13 40 40 H 1.09004 * 109.57367 * 298.59766 * 19 18 13 41 41 H 1.09000 * 109.45880 * 58.07112 * 20 15 14 42 42 H 1.08998 * 109.46715 * 178.04907 * 20 15 14 43 43 H 1.08994 * 115.56332 * 201.26762 * 24 9 7 44 44 H 1.08994 * 117.49761 * 145.01844 * 25 24 9 45 45 H 1.09003 * 117.49794 * 0.02562 * 25 24 9 46 46 H 1.08996 * 117.49734 * 107.48894 * 26 25 24 47 47 H 1.09000 * 117.49658 * 252.51505 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3791 2.1149 -1.3934 5 1 1.5118 2.6156 0.8153 6 1 3.6020 1.4089 0.5781 7 6 2.0103 -1.2021 -0.0005 8 1 1.5317 -2.1022 0.3562 9 7 3.3019 -1.2467 -0.4532 10 6 3.6990 -0.4473 -1.6149 11 7 3.5023 -1.2308 -2.8371 12 6 4.5062 -2.1069 -3.4641 13 6 3.7753 -2.6694 -4.6919 14 6 4.5123 -2.2784 -5.9694 15 7 4.8990 -3.5005 -6.6912 16 6 5.8074 -4.3250 -5.8825 17 6 5.0930 -4.7747 -4.6051 18 6 3.6721 -4.1922 -4.6019 19 6 2.9170 -4.7049 -5.8364 20 6 3.7132 -4.2691 -7.0946 21 8 2.4594 -2.0607 -4.6448 22 6 2.3806 -1.2630 -3.5713 23 8 1.3843 -0.6272 -3.2888 24 6 4.2867 -2.0940 0.2241 25 6 3.9570 -3.5808 0.3716 26 6 3.9075 -2.6614 1.5936 27 1 -0.4850 0.8400 -0.0004 28 1 3.0898 0.4554 -1.6600 29 1 4.7499 -0.1724 -1.5246 30 1 5.3818 -1.5323 -3.7663 31 1 4.7896 -2.9121 -2.7863 32 1 3.8576 -1.6749 -6.5982 33 1 5.4050 -1.7068 -5.7153 34 1 6.6894 -3.7413 -5.6187 35 1 6.1101 -5.2007 -6.4565 36 1 5.6387 -4.4117 -3.7341 37 1 5.0418 -5.8632 -4.5790 38 1 3.1475 -4.4818 -3.6914 39 1 2.8615 -5.7930 -5.8046 40 1 1.9106 -4.2863 -5.8488 41 1 3.0729 -3.6472 -7.7201 42 1 4.0248 -5.1497 -7.6563 43 1 5.3301 -1.8234 0.0628 44 1 4.7836 -4.2883 0.3072 45 1 3.0076 -3.9286 -0.0356 46 1 2.9255 -2.4043 1.9905 47 1 4.7017 -2.7641 2.3331 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495856521.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:40 Heat of formation + Delta-G solvation = -13.997830 kcal Electronic energy + Delta-G solvation = -29925.225401 eV Core-core repulsion = 26109.535389 eV Total energy + Delta-G solvation = -3815.690012 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.13180 -40.80617 -39.00466 -37.89465 -36.39192 -34.84423 -33.34732 -32.97300 -31.93741 -31.59217 -28.00443 -26.70770 -25.50994 -24.31397 -23.95265 -23.36892 -23.00721 -22.23736 -21.57395 -19.39089 -18.66870 -18.18687 -17.93637 -17.72107 -17.24156 -17.04728 -16.81722 -16.48372 -16.00807 -15.66274 -15.18096 -14.89403 -14.59815 -14.47057 -14.31076 -14.02024 -13.85858 -13.78848 -13.60676 -13.31293 -13.04272 -12.97283 -12.91096 -12.76677 -12.63480 -12.27898 -12.13878 -12.03029 -11.95838 -11.86870 -11.57363 -11.53252 -11.27815 -11.08395 -11.03974 -10.61435 -9.90490 -9.27291 -8.83311 -8.22558 -5.67344 1.25973 1.33244 1.43927 1.59211 1.88058 2.39258 2.53405 2.93492 2.96174 3.16049 3.20938 3.35732 3.40004 3.56241 3.79757 3.90383 3.97104 4.10650 4.19325 4.22425 4.25805 4.33657 4.35977 4.38521 4.40266 4.44891 4.51060 4.59278 4.78199 4.81190 4.88557 4.91765 4.99086 5.00894 5.05208 5.06446 5.15409 5.16925 5.27877 5.29477 5.53701 5.60071 5.88348 5.97907 6.09858 6.14014 6.54948 6.89302 7.20646 7.54852 7.88305 8.96714 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.017281 B = 0.005035 C = 0.004458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.890463 B = 5560.225244 C = 6279.969646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.000 4.000 3 Si 0.932 3.068 4 H -0.287 1.287 5 H -0.305 1.305 6 H -0.226 1.226 7 C -0.263 4.263 8 H 0.025 0.975 9 N -0.568 5.568 10 C 0.363 3.637 11 N -0.625 5.625 12 C 0.077 3.923 13 C 0.061 3.939 14 C 0.059 3.941 15 N -0.519 5.519 16 C 0.048 3.952 17 C -0.138 4.138 18 C -0.090 4.090 19 C -0.146 4.146 20 C 0.054 3.946 21 O -0.345 6.345 22 C 0.626 3.374 23 O -0.569 6.569 24 C 0.105 3.895 25 C -0.203 4.203 26 C -0.190 4.190 27 H 0.259 0.741 28 H 0.049 0.951 29 H 0.127 0.873 30 H 0.126 0.874 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.121 0.879 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.055 0.945 39 H 0.084 0.916 40 H 0.042 0.958 41 H 0.066 0.934 42 H 0.102 0.898 43 H 0.146 0.854 44 H 0.120 0.880 45 H 0.043 0.957 46 H 0.060 0.940 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.620 -10.178 -11.914 26.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.199 4.199 3 Si 0.759 3.241 4 H -0.215 1.215 5 H -0.234 1.234 6 H -0.149 1.149 7 C -0.393 4.393 8 H 0.043 0.957 9 N -0.288 5.288 10 C 0.158 3.842 11 N -0.377 5.377 12 C -0.045 4.045 13 C 0.022 3.978 14 C -0.070 4.070 15 N -0.239 5.239 16 C -0.079 4.079 17 C -0.177 4.177 18 C -0.110 4.110 19 C -0.185 4.185 20 C -0.074 4.074 21 O -0.256 6.256 22 C 0.379 3.621 23 O -0.455 6.455 24 C -0.001 4.001 25 C -0.243 4.243 26 C -0.228 4.228 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.145 0.855 30 H 0.144 0.856 31 H 0.117 0.883 32 H 0.096 0.904 33 H 0.139 0.861 34 H 0.117 0.883 35 H 0.115 0.885 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.073 0.927 39 H 0.102 0.898 40 H 0.061 0.939 41 H 0.085 0.915 42 H 0.121 0.879 43 H 0.163 0.837 44 H 0.138 0.862 45 H 0.062 0.938 46 H 0.079 0.921 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 21.086 -9.625 -12.350 26.264 hybrid contribution -2.084 0.525 1.156 2.440 sum 19.003 -9.100 -11.194 23.859 Atomic orbital electron populations 1.70016 1.08335 1.27243 1.52269 1.26023 0.95379 1.01513 0.96961 0.86021 0.81056 0.80313 0.76697 1.21532 1.23368 1.14870 1.18129 0.88331 0.92402 1.40422 0.95687 1.44416 1.06933 1.50401 1.27015 1.21622 1.00151 0.88437 0.74029 1.50021 1.12650 1.48213 1.26802 1.23274 0.92779 0.95172 0.93314 1.23912 0.79658 0.94973 0.99259 1.22651 0.99889 0.94024 0.90395 1.62776 1.15349 1.06088 1.39719 1.22439 0.95284 0.98402 0.91793 1.22329 0.92232 1.02109 1.00998 1.21383 0.99474 0.91092 0.99006 1.22543 0.98717 1.01820 0.95470 1.22603 0.90688 0.98812 0.95311 1.87224 1.37081 1.57694 1.43583 1.19114 0.84668 0.79220 0.79112 1.91076 1.34314 1.47973 1.72177 1.21640 0.93134 0.89632 0.95729 1.23223 1.01714 0.95861 1.03530 1.23095 1.02494 1.05122 0.92088 0.93217 0.93344 0.85529 0.85604 0.88327 0.90426 0.86086 0.88260 0.88492 0.89653 0.89515 0.92679 0.89777 0.93916 0.91520 0.87938 0.83695 0.86236 0.93827 0.92136 0.86334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -63.52 13.97 21.65 0.30 -63.21 16 2 C 0.00 -0.02 5.30 84.86 0.45 0.43 16 3 Si 0.93 47.07 25.09 68.60 1.72 48.79 16 4 H -0.29 -14.69 6.68 99.48 0.66 -14.02 16 5 H -0.31 -15.69 7.11 99.48 0.71 -14.98 16 6 H -0.23 -9.81 7.11 99.48 0.71 -9.10 16 7 C -0.26 -15.27 8.49 84.03 0.71 -14.55 16 8 H 0.03 1.68 7.43 -2.91 -0.02 1.66 16 9 N -0.57 -25.38 2.65 -689.68 -1.83 -27.21 16 10 C 0.36 14.59 5.43 170.96 0.93 15.52 16 11 N -0.62 -23.72 3.21 -963.36 -3.09 -26.81 16 12 C 0.08 1.86 6.41 86.42 0.55 2.41 16 13 C 0.06 1.57 0.80 -10.78 -0.01 1.56 16 14 C 0.06 1.15 5.65 86.12 0.49 1.63 16 15 N -0.52 -8.22 5.24 -891.55 -4.67 -12.89 16 16 C 0.05 0.51 6.07 86.33 0.52 1.04 16 17 C -0.14 -1.83 5.52 30.82 0.17 -1.66 16 18 C -0.09 -2.04 2.57 -10.46 -0.03 -2.07 16 19 C -0.15 -3.16 5.81 31.50 0.18 -2.98 16 20 C 0.05 0.93 6.12 87.03 0.53 1.46 16 21 O -0.35 -13.74 9.94 -49.21 -0.49 -14.23 16 22 C 0.63 29.77 8.85 129.90 1.15 30.92 16 23 O -0.57 -34.71 17.55 19.63 0.34 -34.37 16 24 C 0.11 3.57 6.61 44.99 0.30 3.86 16 25 C -0.20 -6.66 10.12 30.59 0.31 -6.35 16 26 C -0.19 -6.55 9.81 30.60 0.30 -6.25 16 27 H 0.26 16.85 8.31 -92.71 -0.77 16.08 16 28 H 0.05 2.35 3.20 -2.39 -0.01 2.35 16 29 H 0.13 3.62 8.04 -2.39 -0.02 3.60 16 30 H 0.13 1.94 7.08 -2.39 -0.02 1.92 16 31 H 0.10 2.15 6.57 -2.39 -0.02 2.14 16 32 H 0.08 1.80 7.96 -2.38 -0.02 1.78 16 33 H 0.12 1.68 7.03 -2.39 -0.02 1.66 16 34 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.08 0.97 6.66 -2.38 -0.02 0.96 16 37 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.04 1.20 7.84 -2.38 -0.02 1.18 16 41 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.15 3.50 8.10 -2.39 -0.02 3.48 16 44 H 0.12 2.87 8.14 -2.39 -0.02 2.85 16 45 H 0.04 1.81 8.07 -2.39 -0.02 1.79 16 46 H 0.06 2.65 6.93 -2.39 -0.02 2.64 16 47 H 0.12 3.14 8.14 -2.39 -0.02 3.12 16 Total: -1.00 -87.59 358.61 -0.23 -87.82 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: 0.93 Total: 17.14 kcal Atomic # 6 Polarization: 18.42 SS G_CDS: 6.56 Total: 24.98 kcal Atomic # 7 Polarization: -120.83 SS G_CDS: -9.30 Total: -130.13 kcal Atomic # 8 Polarization: -48.45 SS G_CDS: -0.14 Total: -48.60 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 1.72 Total: 48.79 kcal Total: -87.59 -0.23 -87.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495856521.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.817 kcal (2) G-P(sol) polarization free energy of solvation -87.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds